HEADER TRANSFERASE 19-FEB-19 6QQU TITLE CRYSTAL STRUCTURE OF TRMD, A TRNA-(N1G37) METHYLTRANSFERASE, FROM TITLE 2 MYCOBACTERIUM ABSCESSUS IN COMPLEX WITH INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: M1G-METHYLTRANSFERASE,TRNA [GM37] METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.228; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM ABSCESSUS; SOURCE 3 ORGANISM_TAXID: 36809; SOURCE 4 ATCC: 19977; SOURCE 5 GENE: TRMD, MAB_3226C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRMD, TRNA METHYLTRANSFERASE, SPOUT METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.E.THOMAS,A.J.WHITEHOUSE,A.G.COYNE,C.ABELL,V.MENDES,T.L.BLUNDELL REVDAT 2 24-JAN-24 6QQU 1 REMARK REVDAT 1 18-SEP-19 6QQU 0 JRNL AUTH A.J.WHITEHOUSE,S.E.THOMAS,K.P.BROWN,A.FANOURAKIS,D.S.CHAN, JRNL AUTH 2 M.D.J.LIBARDO,V.MENDES,H.I.M.BOSHOFF,R.A.FLOTO,C.ABELL, JRNL AUTH 3 T.L.BLUNDELL,A.G.COYNE JRNL TITL DEVELOPMENT OF INHIBITORS AGAINSTMYCOBACTERIUM ABSCESSUSTRNA JRNL TITL 2 (M1G37) METHYLTRANSFERASE (TRMD) USING FRAGMENT-BASED JRNL TITL 3 APPROACHES. JRNL REF J.MED.CHEM. V. 62 7210 2019 JRNL REFN ISSN 0022-2623 JRNL PMID 31282680 JRNL DOI 10.1021/ACS.JMEDCHEM.9B00809 REMARK 2 REMARK 2 RESOLUTION. 1.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 68393 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 3374 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 54.0871 - 4.5855 1.00 2858 209 0.1613 0.1795 REMARK 3 2 4.5855 - 3.6399 1.00 2750 174 0.1515 0.1797 REMARK 3 3 3.6399 - 3.1798 1.00 2773 128 0.1805 0.1714 REMARK 3 4 3.1798 - 2.8891 1.00 2757 143 0.1931 0.1878 REMARK 3 5 2.8891 - 2.6820 1.00 2735 132 0.1936 0.2351 REMARK 3 6 2.6820 - 2.5239 1.00 2697 147 0.1910 0.2412 REMARK 3 7 2.5239 - 2.3975 1.00 2722 144 0.1848 0.1958 REMARK 3 8 2.3975 - 2.2931 1.00 2705 158 0.1790 0.2114 REMARK 3 9 2.2931 - 2.2049 1.00 2666 150 0.1760 0.2220 REMARK 3 10 2.2049 - 2.1288 1.00 2706 140 0.1793 0.1966 REMARK 3 11 2.1288 - 2.0622 1.00 2721 131 0.1834 0.2125 REMARK 3 12 2.0622 - 2.0033 1.00 2658 147 0.1812 0.2020 REMARK 3 13 2.0033 - 1.9505 1.00 2700 147 0.1748 0.2175 REMARK 3 14 1.9505 - 1.9029 1.00 2687 153 0.1829 0.2148 REMARK 3 15 1.9029 - 1.8597 1.00 2692 129 0.1861 0.2091 REMARK 3 16 1.8597 - 1.8201 1.00 2700 112 0.1978 0.2074 REMARK 3 17 1.8201 - 1.7837 1.00 2710 111 0.1974 0.2535 REMARK 3 18 1.7837 - 1.7500 1.00 2669 113 0.2186 0.2418 REMARK 3 19 1.7500 - 1.7188 1.00 2689 143 0.2317 0.2626 REMARK 3 20 1.7188 - 1.6896 1.00 2683 138 0.2483 0.2714 REMARK 3 21 1.6896 - 1.6624 1.00 2689 145 0.2523 0.2851 REMARK 3 22 1.6624 - 1.6368 1.00 2694 132 0.2476 0.2911 REMARK 3 23 1.6368 - 1.6127 1.00 2707 108 0.2641 0.2787 REMARK 3 24 1.6127 - 1.5900 1.00 2651 140 0.2756 0.3038 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.49 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3329 REMARK 3 ANGLE : 1.070 4570 REMARK 3 CHIRALITY : 0.043 517 REMARK 3 PLANARITY : 0.005 592 REMARK 3 DIHEDRAL : 11.736 1195 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -1 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.1159 13.0997 -22.0123 REMARK 3 T TENSOR REMARK 3 T11: 0.3408 T22: 0.4065 REMARK 3 T33: 0.2529 T12: 0.0258 REMARK 3 T13: 0.0241 T23: -0.0147 REMARK 3 L TENSOR REMARK 3 L11: 0.2171 L22: 0.1281 REMARK 3 L33: 0.2126 L12: 0.0000 REMARK 3 L13: 0.0242 L23: -0.0501 REMARK 3 S TENSOR REMARK 3 S11: 0.1014 S12: 0.7230 S13: -0.1760 REMARK 3 S21: -0.6175 S22: -0.3573 S23: 0.0534 REMARK 3 S31: 0.0854 S32: -0.3617 S33: -0.0054 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 19 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.0801 18.8159 -14.5616 REMARK 3 T TENSOR REMARK 3 T11: 0.2514 T22: 0.2952 REMARK 3 T33: 0.2705 T12: 0.0143 REMARK 3 T13: -0.0108 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 1.2851 L22: 0.4003 REMARK 3 L33: 0.7042 L12: -0.0466 REMARK 3 L13: -0.0794 L23: -0.3552 REMARK 3 S TENSOR REMARK 3 S11: 0.0570 S12: 0.1105 S13: 0.0060 REMARK 3 S21: -0.1124 S22: 0.0943 S23: -0.0075 REMARK 3 S31: -0.0703 S32: -0.1186 S33: 0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.7728 9.8208 -8.8747 REMARK 3 T TENSOR REMARK 3 T11: 0.2328 T22: 0.2269 REMARK 3 T33: 0.2437 T12: -0.0150 REMARK 3 T13: 0.0064 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 1.3766 L22: 0.3375 REMARK 3 L33: 1.1254 L12: -0.0123 REMARK 3 L13: -0.2287 L23: -0.0191 REMARK 3 S TENSOR REMARK 3 S11: -0.0416 S12: -0.1044 S13: -0.0589 REMARK 3 S21: -0.0882 S22: 0.0431 S23: 0.0132 REMARK 3 S31: 0.0608 S32: -0.0670 S33: -0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 132 THROUGH 178 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.6923 9.1625 -20.6208 REMARK 3 T TENSOR REMARK 3 T11: 0.2470 T22: 0.2524 REMARK 3 T33: 0.2572 T12: -0.0192 REMARK 3 T13: 0.0168 T23: -0.0475 REMARK 3 L TENSOR REMARK 3 L11: 1.0271 L22: 0.4274 REMARK 3 L33: 0.4993 L12: -0.2842 REMARK 3 L13: -0.0969 L23: -0.4803 REMARK 3 S TENSOR REMARK 3 S11: -0.0026 S12: 0.1942 S13: -0.0800 REMARK 3 S21: -0.1435 S22: -0.0233 S23: -0.0139 REMARK 3 S31: 0.0731 S32: -0.0819 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 179 THROUGH 227 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.3515 3.1300 -31.1212 REMARK 3 T TENSOR REMARK 3 T11: 0.2857 T22: 0.2641 REMARK 3 T33: 0.2781 T12: -0.0098 REMARK 3 T13: -0.0022 T23: -0.0150 REMARK 3 L TENSOR REMARK 3 L11: 0.7253 L22: 0.4333 REMARK 3 L33: 0.1613 L12: -0.2914 REMARK 3 L13: -0.3723 L23: 0.2317 REMARK 3 S TENSOR REMARK 3 S11: -0.0269 S12: -0.0774 S13: 0.1184 REMARK 3 S21: -0.1001 S22: 0.1237 S23: -0.2543 REMARK 3 S31: -0.0729 S32: 0.3107 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.0807 20.1592 -37.7512 REMARK 3 T TENSOR REMARK 3 T11: 0.4142 T22: 0.3588 REMARK 3 T33: 0.3083 T12: 0.0832 REMARK 3 T13: -0.0334 T23: 0.0182 REMARK 3 L TENSOR REMARK 3 L11: 0.8886 L22: 0.6513 REMARK 3 L33: 0.5141 L12: 0.0624 REMARK 3 L13: -0.2467 L23: -0.4802 REMARK 3 S TENSOR REMARK 3 S11: 0.2742 S12: 0.3975 S13: 0.2372 REMARK 3 S21: -0.3578 S22: -0.2835 S23: 0.6191 REMARK 3 S31: -0.2018 S32: -0.6305 S33: -0.0041 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 49 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.5715 16.6799 -31.7202 REMARK 3 T TENSOR REMARK 3 T11: 0.3001 T22: 0.2080 REMARK 3 T33: 0.2234 T12: -0.0085 REMARK 3 T13: 0.0199 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 1.0508 L22: 0.4841 REMARK 3 L33: 0.7318 L12: -0.4671 REMARK 3 L13: -0.7845 L23: 0.5251 REMARK 3 S TENSOR REMARK 3 S11: 0.0642 S12: 0.0942 S13: 0.0727 REMARK 3 S21: -0.2104 S22: -0.0198 S23: -0.0516 REMARK 3 S31: -0.1791 S32: -0.0210 S33: 0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 116 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.1103 17.9124 -32.6411 REMARK 3 T TENSOR REMARK 3 T11: 0.3038 T22: 0.2488 REMARK 3 T33: 0.2742 T12: -0.0512 REMARK 3 T13: 0.0603 T23: -0.0260 REMARK 3 L TENSOR REMARK 3 L11: -0.0244 L22: 0.1562 REMARK 3 L33: 0.0600 L12: 0.0298 REMARK 3 L13: -0.0249 L23: 0.1194 REMARK 3 S TENSOR REMARK 3 S11: 0.0366 S12: -0.1139 S13: 0.0647 REMARK 3 S21: -0.2868 S22: 0.1029 S23: -0.1038 REMARK 3 S31: -0.1902 S32: 0.3345 S33: -0.0001 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 132 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.7959 19.5137 -18.5113 REMARK 3 T TENSOR REMARK 3 T11: 0.2194 T22: 0.2204 REMARK 3 T33: 0.2605 T12: -0.0044 REMARK 3 T13: -0.0059 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 0.6886 L22: 0.0554 REMARK 3 L33: 0.6007 L12: -0.1129 REMARK 3 L13: -0.1012 L23: -0.2593 REMARK 3 S TENSOR REMARK 3 S11: -0.0217 S12: -0.0074 S13: 0.0971 REMARK 3 S21: -0.0825 S22: -0.0044 S23: -0.0423 REMARK 3 S31: -0.0250 S32: 0.0058 S33: -0.0000 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 183 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.8812 21.5215 5.9524 REMARK 3 T TENSOR REMARK 3 T11: 0.2514 T22: 0.4479 REMARK 3 T33: 0.2904 T12: -0.0025 REMARK 3 T13: -0.0059 T23: -0.0720 REMARK 3 L TENSOR REMARK 3 L11: 0.3090 L22: 0.5634 REMARK 3 L33: 0.3274 L12: -0.2272 REMARK 3 L13: -0.3986 L23: 0.3826 REMARK 3 S TENSOR REMARK 3 S11: -0.0102 S12: -0.3765 S13: 0.1518 REMARK 3 S21: 0.1771 S22: 0.0017 S23: -0.1142 REMARK 3 S31: 0.0809 S32: 0.0092 S33: -0.0000 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 223 THROUGH 232 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.0607 9.7517 -1.6814 REMARK 3 T TENSOR REMARK 3 T11: 0.2939 T22: 0.3430 REMARK 3 T33: 0.3826 T12: -0.0542 REMARK 3 T13: -0.0514 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 0.0576 L22: 0.0144 REMARK 3 L33: -0.0050 L12: -0.0138 REMARK 3 L13: -0.0189 L23: 0.0032 REMARK 3 S TENSOR REMARK 3 S11: 0.1461 S12: 0.3692 S13: -0.5728 REMARK 3 S21: -0.1378 S22: 0.1828 S23: -0.1734 REMARK 3 S31: 0.3788 S32: -0.2741 S33: -0.0006 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QQU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1292100703. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JAN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.31 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68474 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.590 REMARK 200 RESOLUTION RANGE LOW (A) : 58.020 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.10 REMARK 200 R MERGE FOR SHELL (I) : 1.69200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.7 REMARK 200 STARTING MODEL: 6NVR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.08M SODIUM CACODYLATE PH 6.5 -7.0, 1 REMARK 280 -2 M AMMONIUM SULPHATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.20500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.95500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.33000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.95500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.20500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.33000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 164 REMARK 465 SER A 165 REMARK 465 ALA A 166 REMARK 465 GLN A 167 REMARK 465 GLU A 168 REMARK 465 ASP A 169 REMARK 465 SER A 170 REMARK 465 HIS A 171 REMARK 465 SER A 172 REMARK 465 GLU A 173 REMARK 465 GLY A 174 REMARK 465 MET A 175 REMARK 465 ALA A 176 REMARK 465 GLY A 228 REMARK 465 PHE A 229 REMARK 465 ASP A 230 REMARK 465 SER A 231 REMARK 465 PRO A 232 REMARK 465 THR A 233 REMARK 465 GLY A 234 REMARK 465 GLU A 235 REMARK 465 HIS A 236 REMARK 465 GLY A 237 REMARK 465 GLY A 238 REMARK 465 ASP A 239 REMARK 465 GLY A 240 REMARK 465 LEU A 241 REMARK 465 SER A 242 REMARK 465 GLY B -1 REMARK 465 ARG B 17 REMARK 465 GLN B 18 REMARK 465 SER B 19 REMARK 465 LEU B 20 REMARK 465 PRO B 21 REMARK 465 GLY B 22 REMARK 465 LYS B 23 REMARK 465 ALA B 24 REMARK 465 ILE B 25 REMARK 465 ASP B 26 REMARK 465 ALA B 27 REMARK 465 GLY B 28 REMARK 465 LEU B 160 REMARK 465 GLY B 161 REMARK 465 ASN B 162 REMARK 465 ALA B 163 REMARK 465 LEU B 164 REMARK 465 SER B 165 REMARK 465 ALA B 166 REMARK 465 GLN B 167 REMARK 465 GLU B 168 REMARK 465 ASP B 169 REMARK 465 SER B 170 REMARK 465 HIS B 171 REMARK 465 SER B 172 REMARK 465 GLU B 173 REMARK 465 GLY B 174 REMARK 465 MET B 175 REMARK 465 ALA B 176 REMARK 465 THR B 233 REMARK 465 GLY B 234 REMARK 465 GLU B 235 REMARK 465 HIS B 236 REMARK 465 GLY B 237 REMARK 465 GLY B 238 REMARK 465 ASP B 239 REMARK 465 GLY B 240 REMARK 465 LEU B 241 REMARK 465 SER B 242 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 14 CG CD OE1 NE2 REMARK 470 ARG A 17 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 18 CG CD OE1 NE2 REMARK 470 LYS A 23 CG CD CE NZ REMARK 470 GLU A 77 CG CD OE1 OE2 REMARK 470 SER A 177 OG REMARK 470 GLU B 11 CG CD OE1 OE2 REMARK 470 GLN B 14 CG CD OE1 NE2 REMARK 470 VAL B 16 CG1 CG2 REMARK 470 LEU B 29 CG CD1 CD2 REMARK 470 ASP B 31 CG OD1 OD2 REMARK 470 ARG B 39 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 44 CG1 CG2 REMARK 470 HIS B 45 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 46 CG CD CE NZ REMARK 470 VAL B 159 CG1 CG2 REMARK 470 SER B 177 OG REMARK 470 GLU B 180 CG CD OE1 OE2 REMARK 470 HIS B 204 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 206 CE NZ REMARK 470 GLN B 217 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 111 -133.56 54.79 REMARK 500 TYR B 111 -135.08 57.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JF8 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JF8 B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6NVR RELATED DB: PDB DBREF 6QQU A 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 DBREF 6QQU B 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 SEQADV 6QQU GLY A -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QQU SER A 0 UNP B1MDI3 EXPRESSION TAG SEQADV 6QQU GLY B -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QQU SER B 0 UNP B1MDI3 EXPRESSION TAG SEQRES 1 A 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 A 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 A 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 A 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 A 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 A 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 A 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 A 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 A 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 A 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 A 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 A 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 A 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 A 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 A 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 A 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 A 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 A 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 A 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER SEQRES 1 B 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 B 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 B 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 B 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 B 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 B 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 B 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 B 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 B 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 B 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 B 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 B 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 B 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 B 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 B 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 B 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 B 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 B 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 B 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER HET JF8 A 301 17 HET JF8 B 301 17 HETNAM JF8 5-AZANYL-3-(1~{H}-INDOL-6-YL)-1~{H}-PYRAZOLE-4- HETNAM 2 JF8 CARBONITRILE FORMUL 3 JF8 2(C12 H9 N5) FORMUL 5 HOH *249(H2 O) HELIX 1 AA1 PHE A 9 TYR A 12 5 4 HELIX 2 AA2 LEU A 13 LEU A 20 1 8 HELIX 3 AA3 PRO A 21 ALA A 27 1 7 HELIX 4 AA4 ARG A 38 THR A 41 5 4 HELIX 5 AA5 LYS A 62 CYS A 74 1 13 HELIX 6 AA6 THR A 91 SER A 99 1 9 HELIX 7 AA7 GLN A 116 ALA A 123 1 8 HELIX 8 AA8 GLY A 141 ARG A 154 1 14 HELIX 9 AA9 PRO A 196 SER A 201 5 6 HELIX 10 AB1 ASP A 203 ARG A 223 1 21 HELIX 11 AB2 PRO A 224 LEU A 227 5 4 HELIX 12 AB3 PHE B 9 GLN B 14 5 6 HELIX 13 AB4 ARG B 38 THR B 41 5 4 HELIX 14 AB5 LYS B 62 CYS B 74 1 13 HELIX 15 AB6 THR B 91 SER B 99 1 9 HELIX 16 AB7 GLN B 116 ALA B 123 1 8 HELIX 17 AB8 GLY B 141 ARG B 154 1 14 HELIX 18 AB9 PRO B 196 SER B 201 5 6 HELIX 19 AC1 ASP B 203 ARG B 223 1 21 HELIX 20 AC2 PRO B 224 GLY B 228 5 5 SHEET 1 AA1 6 VAL A 30 ASP A 36 0 SHEET 2 AA1 6 MET A 1 THR A 7 1 N VAL A 5 O HIS A 35 SHEET 3 AA1 6 HIS A 103 ALA A 107 1 O ILE A 106 N ASP A 4 SHEET 4 AA1 6 LEU A 79 PRO A 83 1 N VAL A 81 O VAL A 105 SHEET 5 AA1 6 ARG A 127 SER A 132 1 O ARG A 129 N LEU A 80 SHEET 6 AA1 6 TYR A 88 PRO A 89 1 N TYR A 88 O SER A 132 SHEET 1 AA2 2 ASP A 49 ASP A 50 0 SHEET 2 AA2 2 VAL A 60 MET A 61 -1 O VAL A 60 N ASP A 50 SHEET 1 AA3 2 SER A 189 TRP A 190 0 SHEET 2 AA3 2 MET A 193 ASP A 194 -1 O MET A 193 N TRP A 190 SHEET 1 AA4 6 VAL B 30 ASP B 36 0 SHEET 2 AA4 6 MET B 1 THR B 7 1 N VAL B 5 O HIS B 35 SHEET 3 AA4 6 HIS B 103 ALA B 107 1 O ILE B 106 N ASP B 4 SHEET 4 AA4 6 LEU B 79 PRO B 83 1 N VAL B 81 O VAL B 105 SHEET 5 AA4 6 ARG B 127 SER B 132 1 O ARG B 129 N LEU B 80 SHEET 6 AA4 6 TYR B 88 PRO B 89 1 N TYR B 88 O GLU B 130 SHEET 1 AA5 2 ASP B 49 ASP B 50 0 SHEET 2 AA5 2 VAL B 60 MET B 61 -1 O VAL B 60 N ASP B 50 SHEET 1 AA6 2 SER B 189 TRP B 190 0 SHEET 2 AA6 2 MET B 193 ASP B 194 -1 O MET B 193 N TRP B 190 CISPEP 1 ARG A 186 PRO A 187 0 2.39 CISPEP 2 ARG B 186 PRO B 187 0 1.76 SITE 1 AC1 18 PRO A 83 THR A 84 PRO A 85 GLY A 109 SITE 2 AC1 18 ARG A 110 TYR A 111 VAL A 131 SER A 132 SITE 3 AC1 18 ILE A 133 GLY A 134 TYR A 136 VAL A 137 SITE 4 AC1 18 LEU A 138 ASN A 139 GLY A 140 GLY A 141 SITE 5 AC1 18 ALA A 144 HOH A 442 SITE 1 AC2 18 PRO B 83 THR B 84 PRO B 85 GLY B 109 SITE 2 AC2 18 ARG B 110 TYR B 111 VAL B 131 SER B 132 SITE 3 AC2 18 ILE B 133 GLY B 134 TYR B 136 VAL B 137 SITE 4 AC2 18 LEU B 138 ASN B 139 GLY B 140 GLY B 141 SITE 5 AC2 18 ALA B 144 HOH B 428 CRYST1 74.410 78.660 85.910 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013439 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012713 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011640 0.00000