HEADER TRANSFERASE 19-FEB-19 6QQZ TITLE CRYSTAL STRUCTURE OF TRMD, A TRNA-(N1G37) METHYLTRANSFERASE, FROM TITLE 2 MYCOBACTERIUM ABSCESSUS IN COMPLEX WITH INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: M1G-METHYLTRANSFERASE,TRNA [GM37] METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.228; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM ABSCESSUS; SOURCE 3 ORGANISM_TAXID: 36809; SOURCE 4 ATCC: 19977; SOURCE 5 GENE: TRMD, MAB_3226C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRMD, TRNA METHYLTRANSFERASE, SPOUT METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.E.THOMAS,A.J.WHITEHOUSE,A.G.COYNE,C.ABELL,V.MENDES,T.L.BLUNDELL REVDAT 2 24-JAN-24 6QQZ 1 REMARK REVDAT 1 18-SEP-19 6QQZ 0 JRNL AUTH A.J.WHITEHOUSE,S.E.THOMAS,K.P.BROWN,A.FANOURAKIS,D.S.CHAN, JRNL AUTH 2 M.D.J.LIBARDO,V.MENDES,H.I.M.BOSHOFF,R.A.FLOTO,C.ABELL, JRNL AUTH 3 T.L.BLUNDELL,A.G.COYNE JRNL TITL DEVELOPMENT OF INHIBITORS AGAINSTMYCOBACTERIUM ABSCESSUSTRNA JRNL TITL 2 (M1G37) METHYLTRANSFERASE (TRMD) USING FRAGMENT-BASED JRNL TITL 3 APPROACHES. JRNL REF J.MED.CHEM. V. 62 7210 2019 JRNL REFN ISSN 0022-2623 JRNL PMID 31282680 JRNL DOI 10.1021/ACS.JMEDCHEM.9B00809 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.74 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 3 NUMBER OF REFLECTIONS : 51578 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.340 REMARK 3 FREE R VALUE TEST SET COUNT : 2752 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.7559 - 4.6193 1.00 2832 159 0.1621 0.1926 REMARK 3 2 4.6193 - 3.6670 0.95 2531 173 0.1498 0.1693 REMARK 3 3 3.6670 - 3.2036 0.94 2513 114 0.1772 0.1694 REMARK 3 4 3.2036 - 2.9107 1.00 2677 127 0.1870 0.2057 REMARK 3 5 2.9107 - 2.7021 1.00 2640 159 0.1923 0.2190 REMARK 3 6 2.7021 - 2.5428 0.87 2294 145 0.1793 0.2258 REMARK 3 7 2.5428 - 2.4155 1.00 2632 156 0.1759 0.1867 REMARK 3 8 2.4155 - 2.3103 1.00 2654 146 0.1698 0.2096 REMARK 3 9 2.3103 - 2.2214 0.60 1575 87 0.1641 0.1784 REMARK 3 10 2.2214 - 2.1448 1.00 2634 150 0.1764 0.2104 REMARK 3 11 2.1448 - 2.0777 1.00 2613 138 0.1715 0.1963 REMARK 3 12 2.0777 - 2.0183 0.83 2188 130 0.1760 0.2219 REMARK 3 13 2.0183 - 1.9652 1.00 2614 142 0.1747 0.2189 REMARK 3 14 1.9652 - 1.9172 0.99 2112 104 0.1757 0.1879 REMARK 3 15 1.9172 - 1.8736 0.65 1241 79 0.1965 0.2227 REMARK 3 16 1.8736 - 1.8338 1.00 2676 121 0.1857 0.2295 REMARK 3 17 1.8338 - 1.7971 1.00 2595 162 0.1892 0.2361 REMARK 3 18 1.7971 - 1.7632 1.00 2597 148 0.2093 0.2358 REMARK 3 19 1.7632 - 1.7317 1.00 2593 160 0.2191 0.2954 REMARK 3 20 1.7317 - 1.7023 1.00 2615 152 0.2443 0.2642 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.11 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3285 REMARK 3 ANGLE : 1.041 4507 REMARK 3 CHIRALITY : 0.041 508 REMARK 3 PLANARITY : 0.006 579 REMARK 3 DIHEDRAL : 13.252 1172 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.0335 13.2461 -22.2128 REMARK 3 T TENSOR REMARK 3 T11: 0.3525 T22: 0.4041 REMARK 3 T33: 0.2599 T12: -0.0281 REMARK 3 T13: 0.0186 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 0.0877 L22: 0.0345 REMARK 3 L33: 0.0895 L12: -0.0199 REMARK 3 L13: 0.0362 L23: -0.0642 REMARK 3 S TENSOR REMARK 3 S11: -0.0247 S12: 0.6287 S13: 0.0102 REMARK 3 S21: -0.4626 S22: -0.0717 S23: -0.0000 REMARK 3 S31: 0.1152 S32: -0.3465 S33: -0.0004 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 20 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.2960 18.8442 -14.2316 REMARK 3 T TENSOR REMARK 3 T11: 0.2646 T22: 0.3225 REMARK 3 T33: 0.3044 T12: 0.0015 REMARK 3 T13: -0.0089 T23: 0.0241 REMARK 3 L TENSOR REMARK 3 L11: 1.0605 L22: 0.3705 REMARK 3 L33: 0.5987 L12: 0.3747 REMARK 3 L13: -0.1275 L23: -0.4506 REMARK 3 S TENSOR REMARK 3 S11: 0.0290 S12: 0.1163 S13: 0.0750 REMARK 3 S21: -0.2349 S22: 0.1710 S23: -0.0320 REMARK 3 S31: -0.2131 S32: -0.1023 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.0185 10.2307 -11.1815 REMARK 3 T TENSOR REMARK 3 T11: 0.2376 T22: 0.2326 REMARK 3 T33: 0.2511 T12: -0.0218 REMARK 3 T13: 0.0050 T23: -0.0126 REMARK 3 L TENSOR REMARK 3 L11: 1.3006 L22: 0.0809 REMARK 3 L33: 0.8490 L12: -0.2024 REMARK 3 L13: -0.3092 L23: -0.0690 REMARK 3 S TENSOR REMARK 3 S11: -0.0324 S12: -0.0098 S13: -0.0481 REMARK 3 S21: -0.0357 S22: 0.0208 S23: 0.0222 REMARK 3 S31: 0.0810 S32: -0.0489 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.5128 0.7243 -25.1128 REMARK 3 T TENSOR REMARK 3 T11: 0.4195 T22: 0.3153 REMARK 3 T33: 0.3548 T12: -0.1245 REMARK 3 T13: -0.0281 T23: -0.2553 REMARK 3 L TENSOR REMARK 3 L11: 0.4932 L22: 0.7958 REMARK 3 L33: 1.2959 L12: 0.2159 REMARK 3 L13: 0.0926 L23: -0.8797 REMARK 3 S TENSOR REMARK 3 S11: -0.1388 S12: 0.1997 S13: -0.3110 REMARK 3 S21: -0.2512 S22: -0.4125 S23: 0.2585 REMARK 3 S31: 0.4860 S32: -0.1217 S33: -0.6182 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 182 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.4427 4.6343 -40.8116 REMARK 3 T TENSOR REMARK 3 T11: 0.3624 T22: 0.2995 REMARK 3 T33: 0.3044 T12: -0.0377 REMARK 3 T13: 0.0712 T23: -0.0150 REMARK 3 L TENSOR REMARK 3 L11: 0.2162 L22: 0.1391 REMARK 3 L33: 0.1408 L12: 0.0237 REMARK 3 L13: 0.1496 L23: 0.1215 REMARK 3 S TENSOR REMARK 3 S11: -0.0107 S12: 0.0441 S13: 0.1371 REMARK 3 S21: -0.5111 S22: 0.2199 S23: -0.3113 REMARK 3 S31: 0.0078 S32: 0.2477 S33: -0.0004 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 204 THROUGH 227 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.4357 2.1541 -24.1014 REMARK 3 T TENSOR REMARK 3 T11: 0.2867 T22: 0.3399 REMARK 3 T33: 0.2920 T12: 0.0298 REMARK 3 T13: -0.0258 T23: -0.0404 REMARK 3 L TENSOR REMARK 3 L11: 0.2204 L22: 0.0359 REMARK 3 L33: 0.0839 L12: 0.0653 REMARK 3 L13: -0.1681 L23: 0.0206 REMARK 3 S TENSOR REMARK 3 S11: -0.0119 S12: -0.0655 S13: 0.1747 REMARK 3 S21: 0.1167 S22: 0.1707 S23: -0.2083 REMARK 3 S31: 0.1101 S32: 0.2783 S33: 0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.9273 16.1409 -36.7489 REMARK 3 T TENSOR REMARK 3 T11: 0.3103 T22: 0.2761 REMARK 3 T33: 0.2360 T12: 0.0078 REMARK 3 T13: -0.0296 T23: 0.0025 REMARK 3 L TENSOR REMARK 3 L11: 1.0781 L22: 0.3456 REMARK 3 L33: 0.6521 L12: 0.4944 REMARK 3 L13: -0.3270 L23: -0.2308 REMARK 3 S TENSOR REMARK 3 S11: -0.0223 S12: 0.1339 S13: -0.0964 REMARK 3 S21: -0.1709 S22: -0.0629 S23: 0.3701 REMARK 3 S31: -0.0960 S32: -0.1701 S33: -0.0001 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 63 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.3287 19.1604 -28.4271 REMARK 3 T TENSOR REMARK 3 T11: 0.2852 T22: 0.2134 REMARK 3 T33: 0.2408 T12: -0.0299 REMARK 3 T13: 0.0220 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 0.8109 L22: 0.4166 REMARK 3 L33: 1.0411 L12: -0.1684 REMARK 3 L13: -0.3315 L23: 0.5177 REMARK 3 S TENSOR REMARK 3 S11: 0.0250 S12: 0.0209 S13: 0.0772 REMARK 3 S21: -0.1876 S22: 0.0500 S23: -0.0401 REMARK 3 S31: -0.1578 S32: 0.0005 S33: 0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 156 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.4755 25.5724 -7.4380 REMARK 3 T TENSOR REMARK 3 T11: 0.3232 T22: 0.3266 REMARK 3 T33: 0.4859 T12: -0.0195 REMARK 3 T13: -0.0176 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 0.0089 L22: 0.0808 REMARK 3 L33: 0.0578 L12: 0.0505 REMARK 3 L13: 0.0241 L23: 0.0792 REMARK 3 S TENSOR REMARK 3 S11: -0.0910 S12: 0.0090 S13: 0.3422 REMARK 3 S21: -0.1269 S22: 0.0171 S23: -0.2945 REMARK 3 S31: -0.2461 S32: 0.0419 S33: 0.0008 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 183 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.5235 22.5510 6.4785 REMARK 3 T TENSOR REMARK 3 T11: 0.2984 T22: 0.3570 REMARK 3 T33: 0.3012 T12: 0.0260 REMARK 3 T13: 0.0189 T23: -0.0788 REMARK 3 L TENSOR REMARK 3 L11: 0.1580 L22: 0.0418 REMARK 3 L33: 0.1166 L12: -0.0769 REMARK 3 L13: -0.1265 L23: 0.0978 REMARK 3 S TENSOR REMARK 3 S11: 0.0180 S12: -0.3657 S13: 0.3143 REMARK 3 S21: 0.2809 S22: -0.0198 S23: 0.1832 REMARK 3 S31: 0.1839 S32: -0.0319 S33: -0.0002 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 204 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.5267 19.8391 5.9757 REMARK 3 T TENSOR REMARK 3 T11: 0.2073 T22: 0.5741 REMARK 3 T33: 0.3501 T12: 0.0311 REMARK 3 T13: -0.0487 T23: -0.1015 REMARK 3 L TENSOR REMARK 3 L11: 0.1394 L22: 0.0034 REMARK 3 L33: 0.8177 L12: 0.0110 REMARK 3 L13: -0.4137 L23: -0.0373 REMARK 3 S TENSOR REMARK 3 S11: -0.1269 S12: -0.5809 S13: 0.1726 REMARK 3 S21: 0.2806 S22: 0.2089 S23: -0.2900 REMARK 3 S31: 0.2896 S32: 0.0475 S33: -0.0253 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 223 THROUGH 232 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.1519 9.6241 -1.7266 REMARK 3 T TENSOR REMARK 3 T11: 0.2890 T22: 0.3132 REMARK 3 T33: 0.4065 T12: -0.0320 REMARK 3 T13: -0.0728 T23: -0.0222 REMARK 3 L TENSOR REMARK 3 L11: 0.0670 L22: 0.0046 REMARK 3 L33: 0.0117 L12: 0.0002 REMARK 3 L13: -0.0348 L23: -0.0045 REMARK 3 S TENSOR REMARK 3 S11: 0.2270 S12: 0.2693 S13: -0.3734 REMARK 3 S21: -0.0412 S22: 0.1292 S23: -0.4531 REMARK 3 S31: 0.2114 S32: -0.2375 S33: -0.0007 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QQZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1292100708. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JAN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.17 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51652 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 86.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 200 DATA REDUNDANCY : 8.700 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.00 REMARK 200 R MERGE FOR SHELL (I) : 0.92300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.7 REMARK 200 STARTING MODEL: 6NVR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.08M SODIUM CACODYLATE PH 6.5 -7.0, 1 REMARK 280 -2 M AMMONIUM SULPHATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.38950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.21900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.88750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.21900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.38950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.88750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 GLY A 161 REMARK 465 ASN A 162 REMARK 465 ALA A 163 REMARK 465 LEU A 164 REMARK 465 SER A 165 REMARK 465 ALA A 166 REMARK 465 GLN A 167 REMARK 465 GLU A 168 REMARK 465 ASP A 169 REMARK 465 SER A 170 REMARK 465 HIS A 171 REMARK 465 SER A 172 REMARK 465 GLU A 173 REMARK 465 GLY A 174 REMARK 465 MET A 175 REMARK 465 ALA A 176 REMARK 465 GLY A 228 REMARK 465 PHE A 229 REMARK 465 ASP A 230 REMARK 465 SER A 231 REMARK 465 PRO A 232 REMARK 465 THR A 233 REMARK 465 GLY A 234 REMARK 465 GLU A 235 REMARK 465 HIS A 236 REMARK 465 GLY A 237 REMARK 465 GLY A 238 REMARK 465 ASP A 239 REMARK 465 GLY A 240 REMARK 465 LEU A 241 REMARK 465 SER A 242 REMARK 465 GLY B -1 REMARK 465 ARG B 17 REMARK 465 GLN B 18 REMARK 465 SER B 19 REMARK 465 LEU B 20 REMARK 465 PRO B 21 REMARK 465 GLY B 22 REMARK 465 LYS B 23 REMARK 465 ALA B 24 REMARK 465 ILE B 25 REMARK 465 ASP B 26 REMARK 465 ALA B 27 REMARK 465 HIS B 42 REMARK 465 ASP B 43 REMARK 465 VAL B 44 REMARK 465 HIS B 45 REMARK 465 LYS B 46 REMARK 465 LEU B 160 REMARK 465 GLY B 161 REMARK 465 ASN B 162 REMARK 465 ALA B 163 REMARK 465 LEU B 164 REMARK 465 SER B 165 REMARK 465 ALA B 166 REMARK 465 GLN B 167 REMARK 465 GLU B 168 REMARK 465 ASP B 169 REMARK 465 SER B 170 REMARK 465 HIS B 171 REMARK 465 SER B 172 REMARK 465 GLU B 173 REMARK 465 GLY B 174 REMARK 465 MET B 175 REMARK 465 ALA B 176 REMARK 465 THR B 233 REMARK 465 GLY B 234 REMARK 465 GLU B 235 REMARK 465 HIS B 236 REMARK 465 GLY B 237 REMARK 465 GLY B 238 REMARK 465 ASP B 239 REMARK 465 GLY B 240 REMARK 465 LEU B 241 REMARK 465 SER B 242 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 0 OG REMARK 470 GLU A 11 CG CD OE1 OE2 REMARK 470 GLN A 14 CG CD OE1 NE2 REMARK 470 ARG A 17 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 18 CG CD OE1 NE2 REMARK 470 LYS A 23 CG CD CE NZ REMARK 470 ARG A 39 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 93 CD OE1 OE2 REMARK 470 SER A 177 OG REMARK 470 GLU A 213 CG CD OE1 OE2 REMARK 470 ARG A 216 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 11 CG CD OE1 OE2 REMARK 470 VAL B 16 CG1 CG2 REMARK 470 LEU B 29 CG CD1 CD2 REMARK 470 ASP B 31 CG OD1 OD2 REMARK 470 ARG B 39 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 159 CG1 CG2 REMARK 470 SER B 177 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 508 O HOH A 525 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 111 -133.17 58.92 REMARK 500 PRO B 15 -6.96 -59.56 REMARK 500 TYR B 111 -132.06 56.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JEB A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JEB B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6NVR RELATED DB: PDB DBREF 6QQZ A 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 DBREF 6QQZ B 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 SEQADV 6QQZ GLY A -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QQZ SER A 0 UNP B1MDI3 EXPRESSION TAG SEQADV 6QQZ GLY B -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QQZ SER B 0 UNP B1MDI3 EXPRESSION TAG SEQRES 1 A 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 A 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 A 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 A 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 A 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 A 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 A 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 A 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 A 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 A 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 A 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 A 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 A 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 A 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 A 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 A 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 A 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 A 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 A 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER SEQRES 1 B 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 B 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 B 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 B 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 B 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 B 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 B 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 B 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 B 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 B 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 B 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 B 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 B 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 B 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 B 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 B 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 B 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 B 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 B 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER HET JEB A 301 24 HET JEB B 301 24 HET SO4 B 302 5 HETNAM JEB 5-AZANYL-3-[1-(PYRIDIN-3-YLMETHYL)INDOL-6-YL]-1~{H}- HETNAM 2 JEB PYRAZOLE-4-CARBONITRILE HETNAM SO4 SULFATE ION FORMUL 3 JEB 2(C18 H14 N6) FORMUL 5 SO4 O4 S 2- FORMUL 6 HOH *234(H2 O) HELIX 1 AA1 PHE A 9 TYR A 12 5 4 HELIX 2 AA2 LEU A 13 LEU A 20 1 8 HELIX 3 AA3 PRO A 21 ALA A 27 1 7 HELIX 4 AA4 ARG A 38 THR A 41 5 4 HELIX 5 AA5 LYS A 62 CYS A 74 1 13 HELIX 6 AA6 THR A 91 SER A 99 1 9 HELIX 7 AA7 GLN A 116 ALA A 123 1 8 HELIX 8 AA8 GLY A 141 ARG A 154 1 14 HELIX 9 AA9 PRO A 196 SER A 201 5 6 HELIX 10 AB1 ASP A 203 ARG A 223 1 21 HELIX 11 AB2 PRO A 224 LEU A 227 5 4 HELIX 12 AB3 PHE B 9 GLN B 14 5 6 HELIX 13 AB4 ARG B 38 THR B 41 5 4 HELIX 14 AB5 LYS B 62 CYS B 74 1 13 HELIX 15 AB6 THR B 91 SER B 99 1 9 HELIX 16 AB7 GLN B 116 ALA B 123 1 8 HELIX 17 AB8 GLY B 141 ARG B 154 1 14 HELIX 18 AB9 PRO B 196 SER B 201 5 6 HELIX 19 AC1 ASP B 203 ARG B 223 1 21 HELIX 20 AC2 PRO B 224 GLY B 228 5 5 SHEET 1 AA1 6 VAL A 30 ASP A 36 0 SHEET 2 AA1 6 MET A 1 THR A 7 1 N VAL A 5 O HIS A 35 SHEET 3 AA1 6 HIS A 103 ALA A 107 1 O ILE A 106 N ASP A 4 SHEET 4 AA1 6 LEU A 79 PRO A 83 1 N VAL A 81 O VAL A 105 SHEET 5 AA1 6 ARG A 127 SER A 132 1 O ARG A 129 N LEU A 80 SHEET 6 AA1 6 TYR A 88 PRO A 89 1 N TYR A 88 O SER A 132 SHEET 1 AA2 2 ASP A 49 ASP A 50 0 SHEET 2 AA2 2 VAL A 60 MET A 61 -1 O VAL A 60 N ASP A 50 SHEET 1 AA3 2 SER A 189 TRP A 190 0 SHEET 2 AA3 2 MET A 193 ASP A 194 -1 O MET A 193 N TRP A 190 SHEET 1 AA4 6 VAL B 30 ASP B 36 0 SHEET 2 AA4 6 MET B 1 THR B 7 1 N VAL B 5 O HIS B 35 SHEET 3 AA4 6 HIS B 103 ALA B 107 1 O ILE B 106 N ASP B 4 SHEET 4 AA4 6 LEU B 79 PRO B 83 1 N VAL B 81 O VAL B 105 SHEET 5 AA4 6 ARG B 127 SER B 132 1 O ARG B 129 N LEU B 80 SHEET 6 AA4 6 TYR B 88 PRO B 89 1 N TYR B 88 O GLU B 130 SHEET 1 AA5 2 ASP B 49 ASP B 50 0 SHEET 2 AA5 2 VAL B 60 MET B 61 -1 O VAL B 60 N ASP B 50 SHEET 1 AA6 2 SER B 189 TRP B 190 0 SHEET 2 AA6 2 MET B 193 ASP B 194 -1 O MET B 193 N TRP B 190 CISPEP 1 ARG A 186 PRO A 187 0 3.30 CISPEP 2 ARG B 186 PRO B 187 0 2.19 SITE 1 AC1 19 PRO A 83 THR A 84 PRO A 85 GLY A 109 SITE 2 AC1 19 ARG A 110 TYR A 111 GLU A 112 VAL A 131 SITE 3 AC1 19 SER A 132 ILE A 133 GLY A 134 TYR A 136 SITE 4 AC1 19 VAL A 137 LEU A 138 ASN A 139 GLY A 140 SITE 5 AC1 19 GLY A 141 ALA A 144 GLU B 180 SITE 1 AC2 18 PRO B 83 THR B 84 PRO B 85 GLY B 109 SITE 2 AC2 18 ARG B 110 TYR B 111 GLU B 112 VAL B 131 SITE 3 AC2 18 SER B 132 ILE B 133 GLY B 134 TYR B 136 SITE 4 AC2 18 VAL B 137 LEU B 138 ASN B 139 GLY B 140 SITE 5 AC2 18 GLY B 141 ALA B 144 SITE 1 AC3 3 ARG B 127 ARG B 129 HOH B 403 CRYST1 74.779 77.775 86.438 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013373 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012858 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011569 0.00000