HEADER DNA 22-FEB-19 6QT2 TITLE RADIATION DAMAGE STUDY ON A 16MER DNA SEGMENT, STRUCTURE AT 6.2 MGY TITLE 2 DOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*GP*CP*TP*GP*GP*AP*AP*AP*TP*TP*TP*CP*CP*AP*GP*C)- COMPND 3 3'); COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: SELF COMPLEMENTARY MODEL DNA SEQUENCE DERIVED FROM COMPND 7 KB33 DNA SEGMENT. THE PRESENT SEQUENCE IS ONE NUCLEOTIDE SHORTER THAN COMPND 8 THAT OF PDB STRUCTURE 1SGS SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS DNA, RADIATION DAMAGE, GLOBAL DAMAGE, SPECIFIC DAMAGE EXPDTA X-RAY DIFFRACTION AUTHOR V.BUGRIS,V.HARMAT,G.FERENC,S.BROCKHAUSER,I.CARMICHAEL,E.F.GARMAN REVDAT 2 24-JAN-24 6QT2 1 LINK REVDAT 1 17-JUL-19 6QT2 0 JRNL AUTH V.BUGRIS,V.HARMAT,G.FERENC,S.BROCKHAUSER,I.CARMICHAEL, JRNL AUTH 2 E.F.GARMAN JRNL TITL RADIATION-DAMAGE INVESTIGATION OF A DNA 16-MER. JRNL REF J.SYNCHROTRON RADIAT. V. 26 998 2019 JRNL REFN ESSN 1600-5775 JRNL PMID 31274421 JRNL DOI 10.1107/S160057751900763X REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.6 REMARK 3 NUMBER OF REFLECTIONS : 3693 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 184 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 167 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 58.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.4080 REMARK 3 BIN FREE R VALUE SET COUNT : 12 REMARK 3 BIN FREE R VALUE : 0.2960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 325 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 38 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.87000 REMARK 3 B22 (A**2) : 0.87000 REMARK 3 B33 (A**2) : -2.83000 REMARK 3 B12 (A**2) : 0.44000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.170 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.168 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.136 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.941 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 364 ; 0.010 ; 0.011 REMARK 3 BOND LENGTHS OTHERS (A): 181 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 560 ; 1.764 ; 1.172 REMARK 3 BOND ANGLES OTHERS (DEGREES): 429 ; 1.688 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 48 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 192 ; 0.023 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 80 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY. THE FINAL MODEL OF REMARK 3 THE LOWEST DOSE DATASET 6QT1 WAS FURTHER REFINED AGAINST THE REMARK 3 CURRENT DATASET COLLECTED AT HIGHER DOSE. REMARK 4 REMARK 4 6QT2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1292100818. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.6-8.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.3 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 3879 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 31.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 60.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 1.04400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6QT1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 MICROLITER 1.5 MM DNA SOLUTION (5MM REMARK 280 HEPES PH 6.6) PLUS 2 MICROLITER 10 MM HEPES PH 6.6 PLUS 4 REMARK 280 MICROLITER RESERVOIR SOLUTION, AGAINST A RESERVOIR OF 1 ML 34% REMARK 280 PEG200, 600 MM CACL2 AND 10 MM HEPES PH 8.6., VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 18.43200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 10.64172 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 54.02100 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 18.43200 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 10.64172 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 54.02100 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 18.43200 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 10.64172 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 54.02100 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 18.43200 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 10.64172 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 54.02100 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 18.43200 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 10.64172 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 54.02100 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 18.43200 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 10.64172 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 54.02100 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 21.28344 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 108.04200 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 21.28344 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 108.04200 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 21.28344 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 108.04200 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 21.28344 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 108.04200 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 21.28344 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 108.04200 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 21.28344 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 108.04200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -42.56688 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 108.04200 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CA CA A 101 LIES ON A SPECIAL POSITION. REMARK 375 CA CA A 102 LIES ON A SPECIAL POSITION. REMARK 375 CA CA A 103 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 210 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP1 DT A 4 O HOH A 201 1.91 REMARK 500 OP1 DA A 15 O HOH A 202 2.06 REMARK 500 O HOH A 203 O HOH A 204 2.07 REMARK 500 O3' DC A 3 O HOH A 201 2.11 REMARK 500 OP1 DT A 4 O HOH A 203 2.17 REMARK 500 OP1 DT A 4 O HOH A 204 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OP2 DC A 3 O HOH A 203 3445 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 102 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DA A 7 OP1 REMARK 620 2 DA A 7 OP1 0.0 REMARK 620 3 HOH A 223 O 83.3 83.3 REMARK 620 4 HOH A 223 O 167.8 167.8 89.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 103 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DA A 7 OP2 REMARK 620 2 DA A 7 OP2 0.0 REMARK 620 3 HOH A 229 O 86.8 86.8 REMARK 620 4 HOH A 229 O 172.2 172.2 87.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 106 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DA A 8 OP2 REMARK 620 2 HOH A 213 O 87.3 REMARK 620 3 HOH A 220 O 90.2 88.2 REMARK 620 4 HOH A 222 O 80.8 166.4 85.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 104 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 16 OP1 REMARK 620 2 HOH A 208 O 86.8 REMARK 620 3 HOH A 221 O 168.8 90.4 REMARK 620 4 HOH A 226 O 90.6 79.4 78.1 REMARK 620 5 HOH A 226 O 87.2 116.3 84.3 37.3 REMARK 620 6 HOH A 228 O 86.0 146.3 90.3 67.7 30.4 REMARK 620 7 HOH A 235 O 103.8 157.1 82.8 120.0 84.9 56.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 101 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC A 17 OP1 REMARK 620 2 DC A 17 OP1 0.0 REMARK 620 3 HOH A 224 O 88.7 88.7 REMARK 620 4 HOH A 224 O 99.7 99.7 77.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 105 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 231 O REMARK 620 2 HOH A 232 O 48.3 REMARK 620 3 HOH A 233 O 79.3 116.2 REMARK 620 4 HOH A 234 O 87.2 93.3 121.5 REMARK 620 5 HOH A 236 O 108.7 60.7 145.7 92.5 REMARK 620 6 HOH A 237 O 163.3 115.2 114.8 92.2 54.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 106 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6QT1 RELATED DB: PDB REMARK 900 SAME RADDAM EXPERIEMENT FROM THE SAME CRYSTAL REMARK 900 RELATED ID: 6QT3 RELATED DB: PDB REMARK 900 RELATED ID: 6QT4 RELATED DB: PDB REMARK 900 RELATED ID: 6QT5 RELATED DB: PDB REMARK 900 RELATED ID: 6QT6 RELATED DB: PDB REMARK 900 RELATED ID: 6QT7 RELATED DB: PDB DBREF 6QT2 A 2 17 PDB 6QT2 6QT2 2 17 SEQRES 1 A 16 DG DC DT DG DG DA DA DA DT DT DT DC DC SEQRES 2 A 16 DA DG DC HET CA A 101 1 HET CA A 102 1 HET CA A 103 1 HET CA A 104 1 HET CA A 105 1 HET CA A 106 1 HETNAM CA CALCIUM ION FORMUL 2 CA 6(CA 2+) FORMUL 8 HOH *38(H2 O) LINK OP1 DA A 7 CA CA A 102 1555 1555 2.29 LINK OP1 DA A 7 CA CA A 102 1555 2445 2.29 LINK OP2 DA A 7 CA CA A 103 1555 1555 2.30 LINK OP2 DA A 7 CA CA A 103 1555 2445 2.30 LINK OP2 DA A 8 CA CA A 106 1555 1555 2.27 LINK OP1 DG A 16 CA CA A 104 1555 1555 2.36 LINK OP1 DC A 17 CA CA A 101 1555 1555 2.15 LINK OP1 DC A 17 CA CA A 101 1555 2445 2.15 LINK CA CA A 101 O HOH A 224 1555 1555 2.25 LINK CA CA A 101 O HOH A 224 1555 2445 2.25 LINK CA CA A 102 O HOH A 223 1555 1555 2.32 LINK CA CA A 102 O HOH A 223 1555 2445 2.32 LINK CA CA A 103 O HOH A 229 1555 1555 2.75 LINK CA CA A 103 O HOH A 229 1555 2445 2.75 LINK CA CA A 104 O HOH A 208 1555 18445 2.38 LINK CA CA A 104 O HOH A 221 1555 3545 2.33 LINK CA CA A 104 O AHOH A 226 1555 3545 2.44 LINK CA CA A 104 O BHOH A 226 1555 3545 3.17 LINK CA CA A 104 O AHOH A 228 1555 1555 2.47 LINK CA CA A 104 O HOH A 235 1555 1555 2.66 LINK CA CA A 105 O HOH A 231 1555 17435 3.12 LINK CA CA A 105 O HOH A 232 1555 1555 2.56 LINK CA CA A 105 O HOH A 233 1555 1555 2.35 LINK CA CA A 105 O HOH A 234 1555 18335 3.12 LINK CA CA A 105 O HOH A 236 1555 1555 2.55 LINK CA CA A 105 O HOH A 237 1555 1555 2.54 LINK CA CA A 106 O HOH A 213 1555 2445 2.48 LINK CA CA A 106 O HOH A 220 1555 2445 2.06 LINK CA CA A 106 O HOH A 222 1555 1555 2.40 SITE 1 AC1 2 DC A 17 HOH A 224 SITE 1 AC2 2 DA A 7 HOH A 223 SITE 1 AC3 2 DA A 7 HOH A 229 SITE 1 AC4 6 DG A 16 HOH A 208 HOH A 221 HOH A 226 SITE 2 AC4 6 HOH A 228 HOH A 235 SITE 1 AC5 4 HOH A 232 HOH A 233 HOH A 236 HOH A 237 SITE 1 AC6 4 DA A 8 HOH A 213 HOH A 220 HOH A 222 CRYST1 36.864 36.864 162.063 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027127 0.015662 0.000000 0.00000 SCALE2 0.000000 0.031323 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006170 0.00000