HEADER NUCLEAR PROTEIN 25-FEB-19 6QTM TITLE CRYSTAL STRUCTURE OF THE SIR4 H-BRCT DOMAIN IN COMPLEX WITH TY5 PS1095 TITLE 2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: REGULATORY PROTEIN SIR4; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: SILENT INFORMATION REGULATOR 4; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: FRAGMENT, RESIDUES 961-1085; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RIBONUCLEASE H; COMPND 9 CHAIN: D, E, F; COMPND 10 EC: 3.1.26.4; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 3 ORGANISM_TAXID: 559292; SOURCE 4 GENE: SIR4, ASD1, STE9, UTH2, YDR227W, YD9934.12; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: B834; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SACCHAROMYCES PARADOXUS; SOURCE 11 ORGANISM_COMMON: YEAST, SACCHAROMYCES DOUGLASII; SOURCE 12 ORGANISM_TAXID: 27291 KEYWDS HETEROCHROMATIN, NUCLEAR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.GUT,I.DESHPANDE,J.J.KEUSCH,K.CHALLA,V.IESMANTAVICIUS,S.M.GASSER REVDAT 5 13-NOV-24 6QTM 1 REMARK REVDAT 4 11-AUG-21 6QTM 1 COMPND SOURCE DBREF REVDAT 3 23-OCT-19 6QTM 1 JRNL REVDAT 2 25-SEP-19 6QTM 1 JRNL REVDAT 1 18-SEP-19 6QTM 0 JRNL AUTH I.DESHPANDE,J.J.KEUSCH,K.CHALLA,V.IESMANTAVICIUS,S.M.GASSER, JRNL AUTH 2 H.GUT JRNL TITL THE SIR4 H-BRCT DOMAIN INTERACTS WITH PHOSPHO-PROTEINS TO JRNL TITL 2 SEQUESTER AND REPRESS YEAST HETEROCHROMATIN. JRNL REF EMBO J. V. 38 01744 2019 JRNL REFN ESSN 1460-2075 JRNL PMID 31515872 JRNL DOI 10.15252/EMBJ.2019101744 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.5 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 10009 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.500 REMARK 3 FREE R VALUE TEST SET COUNT : 751 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 5 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.35 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.86 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2724 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2497 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2520 REMARK 3 BIN R VALUE (WORKING SET) : 0.2485 REMARK 3 BIN FREE R VALUE : 0.2640 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 7.49 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 204 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2971 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 7 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 81.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 91.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -23.85180 REMARK 3 B22 (A**2) : -23.85180 REMARK 3 B33 (A**2) : 47.70360 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.663 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.430 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.869 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.837 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3056 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4112 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1103 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 94 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 408 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3056 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 395 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : 1 ; 1.000 ; HARMONIC REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3428 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.16 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.26 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 21.30 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|970 - A|1084 } REMARK 3 ORIGIN FOR THE GROUP (A): 7.2446 36.1686 1.1474 REMARK 3 T TENSOR REMARK 3 T11: 0.1639 T22: 0.0682 REMARK 3 T33: 0.0172 T12: -0.0380 REMARK 3 T13: -0.0048 T23: -0.0327 REMARK 3 L TENSOR REMARK 3 L11: 2.7195 L22: 3.0219 REMARK 3 L33: 7.1759 L12: 0.2721 REMARK 3 L13: -1.7530 L23: -0.1366 REMARK 3 S TENSOR REMARK 3 S11: 0.2022 S12: 0.1904 S13: 0.3200 REMARK 3 S21: 0.1775 S22: 0.0467 S23: -0.1301 REMARK 3 S31: -0.8231 S32: -0.0325 S33: -0.2488 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|970 - B|1084 } REMARK 3 ORIGIN FOR THE GROUP (A): 1.7721 19.2720 -20.3347 REMARK 3 T TENSOR REMARK 3 T11: 0.0999 T22: 0.2973 REMARK 3 T33: 0.1092 T12: -0.0246 REMARK 3 T13: -0.0175 T23: -0.1069 REMARK 3 L TENSOR REMARK 3 L11: 1.9461 L22: 3.2684 REMARK 3 L33: 7.5714 L12: 0.5701 REMARK 3 L13: -0.0442 L23: 0.6195 REMARK 3 S TENSOR REMARK 3 S11: -0.0683 S12: 0.3161 S13: -0.2912 REMARK 3 S21: 0.0799 S22: 0.0770 S23: 0.0374 REMARK 3 S31: 0.5578 S32: -0.0527 S33: -0.0087 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): -3.0449 34.7587 -43.3792 REMARK 3 T TENSOR REMARK 3 T11: 0.1518 T22: 0.3748 REMARK 3 T33: 0.2213 T12: 0.1225 REMARK 3 T13: -0.1061 T23: -0.0372 REMARK 3 L TENSOR REMARK 3 L11: 1.2209 L22: 2.0190 REMARK 3 L33: 7.3288 L12: -0.4044 REMARK 3 L13: -0.2623 L23: 0.5372 REMARK 3 S TENSOR REMARK 3 S11: -0.1228 S12: -0.1355 S13: 0.3327 REMARK 3 S21: -0.1512 S22: 0.1300 S23: 0.0715 REMARK 3 S31: -0.6178 S32: -0.6683 S33: -0.0072 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QTM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1292100841. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JAN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10009 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.18100 REMARK 200 FOR THE DATA SET : 7.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M AMMONIUM SULFATE 0.2 M SODIUM REMARK 280 POTASSIUM TARTRATE 0.1 M TRI-SODIUM CITRATE PH 5.6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 135.23000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 29.46500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 29.46500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 67.61500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 29.46500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 29.46500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 202.84500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 29.46500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.46500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 67.61500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 29.46500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.46500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 202.84500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 135.23000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 959 REMARK 465 PRO A 960 REMARK 465 LYS A 961 REMARK 465 PRO A 962 REMARK 465 LYS A 963 REMARK 465 ASN A 964 REMARK 465 THR A 965 REMARK 465 LYS A 966 REMARK 465 GLU A 967 REMARK 465 ASN A 968 REMARK 465 PRO A 1060 REMARK 465 ASP A 1061 REMARK 465 ALA A 1062 REMARK 465 LYS A 1063 REMARK 465 GLN A 1085 REMARK 465 GLY B 959 REMARK 465 PRO B 960 REMARK 465 LYS B 961 REMARK 465 PRO B 962 REMARK 465 LYS B 963 REMARK 465 ASN B 964 REMARK 465 THR B 965 REMARK 465 LYS B 966 REMARK 465 GLU B 967 REMARK 465 ASN B 968 REMARK 465 ALA B 1062 REMARK 465 LYS B 1063 REMARK 465 GLN B 1085 REMARK 465 GLY C 959 REMARK 465 PRO C 960 REMARK 465 LYS C 961 REMARK 465 PRO C 962 REMARK 465 LYS C 963 REMARK 465 ASN C 964 REMARK 465 THR C 965 REMARK 465 LYS C 966 REMARK 465 GLU C 967 REMARK 465 ASN C 968 REMARK 465 LEU C 969 REMARK 465 ASN C 1058 REMARK 465 LYS C 1059 REMARK 465 PRO C 1060 REMARK 465 ASP C 1061 REMARK 465 GLN C 1085 REMARK 465 GLU D 1087 REMARK 465 SER D 1088 REMARK 465 PRO D 1089 REMARK 465 PRO D 1090 REMARK 465 ASN D 1098 REMARK 465 THR D 1099 REMARK 465 SER D 1100 REMARK 465 PHE D 1101 REMARK 465 ASN D 1102 REMARK 465 ALA D 1103 REMARK 465 GLU E 1087 REMARK 465 SER E 1088 REMARK 465 PRO E 1089 REMARK 465 PRO E 1090 REMARK 465 ASN E 1098 REMARK 465 THR E 1099 REMARK 465 SER E 1100 REMARK 465 PHE E 1101 REMARK 465 ASN E 1102 REMARK 465 ALA E 1103 REMARK 465 GLU F 1087 REMARK 465 SER F 1088 REMARK 465 PRO F 1089 REMARK 465 PRO F 1090 REMARK 465 PHE F 1101 REMARK 465 ASN F 1102 REMARK 465 ALA F 1103 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 971 -97.50 84.65 REMARK 500 GLU A1030 50.29 -95.65 REMARK 500 GLU B1030 50.92 -95.12 REMARK 500 GLU C 996 74.19 59.00 REMARK 500 LYS C1063 65.91 28.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 1103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Ligand residues SEP D 1095 REMARK 800 through PRO D 1096 bound to SER D 1094 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Ligand residues SEP E 1095 REMARK 800 through PRO E 1096 bound to SER E 1094 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Ligand residues SEP F 1095 REMARK 800 through PRO F 1096 bound to SER F 1094 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6QSZ RELATED DB: PDB DBREF 6QTM A 961 1085 UNP P11978 SIR4_YEAST 961 1085 DBREF 6QTM B 961 1085 UNP P11978 SIR4_YEAST 961 1085 DBREF 6QTM C 961 1085 UNP P11978 SIR4_YEAST 961 1085 DBREF 6QTM D 1087 1103 UNP O42838 O42838_SACPA 1087 1103 DBREF 6QTM E 1087 1103 UNP O42838 O42838_SACPA 1087 1103 DBREF 6QTM F 1087 1103 UNP O42838 O42838_SACPA 1087 1103 SEQADV 6QTM GLY A 959 UNP P11978 EXPRESSION TAG SEQADV 6QTM PRO A 960 UNP P11978 EXPRESSION TAG SEQADV 6QTM GLY B 959 UNP P11978 EXPRESSION TAG SEQADV 6QTM PRO B 960 UNP P11978 EXPRESSION TAG SEQADV 6QTM GLY C 959 UNP P11978 EXPRESSION TAG SEQADV 6QTM PRO C 960 UNP P11978 EXPRESSION TAG SEQRES 1 A 127 GLY PRO LYS PRO LYS ASN THR LYS GLU ASN LEU SER LYS SEQRES 2 A 127 SER SER TRP ARG GLN GLU TRP LEU ALA ASN LEU LYS LEU SEQRES 3 A 127 ILE SER VAL SER LEU VAL ASP GLU PHE PRO SER GLU LEU SEQRES 4 A 127 SER ASP SER ASP ARG GLN ILE ILE ASN GLU LYS MSE GLN SEQRES 5 A 127 LEU LEU LYS ASP ILE PHE ALA ASN ASN LEU LYS SER ALA SEQRES 6 A 127 ILE SER ASN ASN PHE ARG GLU SER ASP ILE ILE ILE LEU SEQRES 7 A 127 LYS GLY GLU ILE GLU ASP TYR PRO MSE SER SER GLU ILE SEQRES 8 A 127 LYS ILE TYR TYR ASN GLU LEU GLN ASN LYS PRO ASP ALA SEQRES 9 A 127 LYS LYS ALA ARG PHE TRP SER PHE MSE LYS THR GLN ARG SEQRES 10 A 127 PHE VAL SER ASN MSE GLY PHE ASP ILE GLN SEQRES 1 B 127 GLY PRO LYS PRO LYS ASN THR LYS GLU ASN LEU SER LYS SEQRES 2 B 127 SER SER TRP ARG GLN GLU TRP LEU ALA ASN LEU LYS LEU SEQRES 3 B 127 ILE SER VAL SER LEU VAL ASP GLU PHE PRO SER GLU LEU SEQRES 4 B 127 SER ASP SER ASP ARG GLN ILE ILE ASN GLU LYS MSE GLN SEQRES 5 B 127 LEU LEU LYS ASP ILE PHE ALA ASN ASN LEU LYS SER ALA SEQRES 6 B 127 ILE SER ASN ASN PHE ARG GLU SER ASP ILE ILE ILE LEU SEQRES 7 B 127 LYS GLY GLU ILE GLU ASP TYR PRO MSE SER SER GLU ILE SEQRES 8 B 127 LYS ILE TYR TYR ASN GLU LEU GLN ASN LYS PRO ASP ALA SEQRES 9 B 127 LYS LYS ALA ARG PHE TRP SER PHE MSE LYS THR GLN ARG SEQRES 10 B 127 PHE VAL SER ASN MSE GLY PHE ASP ILE GLN SEQRES 1 C 127 GLY PRO LYS PRO LYS ASN THR LYS GLU ASN LEU SER LYS SEQRES 2 C 127 SER SER TRP ARG GLN GLU TRP LEU ALA ASN LEU LYS LEU SEQRES 3 C 127 ILE SER VAL SER LEU VAL ASP GLU PHE PRO SER GLU LEU SEQRES 4 C 127 SER ASP SER ASP ARG GLN ILE ILE ASN GLU LYS MSE GLN SEQRES 5 C 127 LEU LEU LYS ASP ILE PHE ALA ASN ASN LEU LYS SER ALA SEQRES 6 C 127 ILE SER ASN ASN PHE ARG GLU SER ASP ILE ILE ILE LEU SEQRES 7 C 127 LYS GLY GLU ILE GLU ASP TYR PRO MSE SER SER GLU ILE SEQRES 8 C 127 LYS ILE TYR TYR ASN GLU LEU GLN ASN LYS PRO ASP ALA SEQRES 9 C 127 LYS LYS ALA ARG PHE TRP SER PHE MSE LYS THR GLN ARG SEQRES 10 C 127 PHE VAL SER ASN MSE GLY PHE ASP ILE GLN SEQRES 1 D 17 GLU SER PRO PRO SER LEU ASP SER SEP PRO PRO ASN THR SEQRES 2 D 17 SER PHE ASN ALA SEQRES 1 E 17 GLU SER PRO PRO SER LEU ASP SER SEP PRO PRO ASN THR SEQRES 2 E 17 SER PHE ASN ALA SEQRES 1 F 17 GLU SER PRO PRO SER LEU ASP SER SEP PRO PRO ASN THR SEQRES 2 F 17 SER PHE ASN ALA MODRES 6QTM MSE A 1009 MET MODIFIED RESIDUE MODRES 6QTM MSE A 1045 MET MODIFIED RESIDUE MODRES 6QTM MSE A 1071 MET MODIFIED RESIDUE MODRES 6QTM MSE A 1080 MET MODIFIED RESIDUE MODRES 6QTM MSE B 1009 MET MODIFIED RESIDUE MODRES 6QTM MSE B 1045 MET MODIFIED RESIDUE MODRES 6QTM MSE B 1071 MET MODIFIED RESIDUE MODRES 6QTM MSE B 1080 MET MODIFIED RESIDUE MODRES 6QTM MSE C 1009 MET MODIFIED RESIDUE MODRES 6QTM MSE C 1045 MET MODIFIED RESIDUE MODRES 6QTM MSE C 1071 MET MODIFIED RESIDUE MODRES 6QTM MSE C 1080 MET MODIFIED RESIDUE MODRES 6QTM SEP D 1095 SER MODIFIED RESIDUE MODRES 6QTM SEP E 1095 SER MODIFIED RESIDUE MODRES 6QTM SEP F 1095 SER MODIFIED RESIDUE HET MSE A1009 8 HET MSE A1045 16 HET MSE A1071 8 HET MSE A1080 8 HET MSE B1009 8 HET MSE B1045 8 HET MSE B1071 8 HET MSE B1080 8 HET MSE C1009 8 HET MSE C1045 8 HET MSE C1071 8 HET MSE C1080 8 HET SEP D1095 10 HET SEP E1095 10 HET SEP F1095 10 HET SO4 A1101 5 HET SO4 A1102 5 HET SO4 B1101 5 HET SO4 C1101 5 HET SO4 C1102 5 HET SO4 C1103 5 HETNAM MSE SELENOMETHIONINE HETNAM SEP PHOSPHOSERINE HETNAM SO4 SULFATE ION HETSYN SEP PHOSPHONOSERINE FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 4 SEP 3(C3 H8 N O6 P) FORMUL 7 SO4 6(O4 S 2-) FORMUL 13 HOH *7(H2 O) HELIX 1 AA1 LYS A 971 LYS A 983 1 13 HELIX 2 AA2 SER A 998 ASN A 1019 1 22 HELIX 3 AA3 GLU A 1039 TYR A 1043 5 5 HELIX 4 AA4 SER A 1047 LEU A 1056 1 10 HELIX 5 AA5 SER A 1069 GLY A 1081 1 13 HELIX 6 AA6 SER B 970 LYS B 983 1 14 HELIX 7 AA7 SER B 998 ASN B 1019 1 22 HELIX 8 AA8 ASN B 1027 SER B 1031 5 5 HELIX 9 AA9 GLU B 1039 TYR B 1043 5 5 HELIX 10 AB1 SER B 1047 LYS B 1059 1 13 HELIX 11 AB2 SER B 1069 MSE B 1080 1 12 HELIX 12 AB3 LYS C 971 LYS C 983 1 13 HELIX 13 AB4 SER C 998 ASN C 1019 1 22 HELIX 14 AB5 GLU C 1039 TYR C 1043 5 5 HELIX 15 AB6 SER C 1047 GLN C 1057 1 11 HELIX 16 AB7 SER C 1069 MSE C 1080 1 12 SHEET 1 AA1 4 ALA A1023 SER A1025 0 SHEET 2 AA1 4 SER A 986 LEU A 989 1 N VAL A 987 O ALA A1023 SHEET 3 AA1 4 ILE A1033 ILE A1035 1 O ILE A1035 N SER A 988 SHEET 4 AA1 4 ARG A1066 TRP A1068 1 O ARG A1066 N ILE A1034 SHEET 1 AA2 4 ALA B1023 SER B1025 0 SHEET 2 AA2 4 SER B 986 LEU B 989 1 N VAL B 987 O ALA B1023 SHEET 3 AA2 4 ILE B1033 ILE B1035 1 O ILE B1035 N SER B 988 SHEET 4 AA2 4 ARG B1066 TRP B1068 1 O TRP B1068 N ILE B1034 SHEET 1 AA3 4 ALA C1023 SER C1025 0 SHEET 2 AA3 4 SER C 986 LEU C 989 1 N VAL C 987 O ALA C1023 SHEET 3 AA3 4 ILE C1033 ILE C1035 1 O ILE C1033 N SER C 988 SHEET 4 AA3 4 ARG C1066 TRP C1068 1 O ARG C1066 N ILE C1034 LINK C LYS A1008 N MSE A1009 1555 1555 1.35 LINK C MSE A1009 N GLN A1010 1555 1555 1.35 LINK C PRO A1044 N AMSE A1045 1555 1555 1.34 LINK C PRO A1044 N BMSE A1045 1555 1555 1.35 LINK C AMSE A1045 N SER A1046 1555 1555 1.34 LINK C BMSE A1045 N SER A1046 1555 1555 1.35 LINK C PHE A1070 N MSE A1071 1555 1555 1.33 LINK C MSE A1071 N LYS A1072 1555 1555 1.36 LINK C ASN A1079 N MSE A1080 1555 1555 1.33 LINK C MSE A1080 N GLY A1081 1555 1555 1.35 LINK C LYS B1008 N MSE B1009 1555 1555 1.34 LINK C MSE B1009 N GLN B1010 1555 1555 1.36 LINK C PRO B1044 N MSE B1045 1555 1555 1.35 LINK C MSE B1045 N SER B1046 1555 1555 1.34 LINK C PHE B1070 N MSE B1071 1555 1555 1.36 LINK C MSE B1071 N LYS B1072 1555 1555 1.36 LINK C ASN B1079 N MSE B1080 1555 1555 1.36 LINK C MSE B1080 N GLY B1081 1555 1555 1.34 LINK C LYS C1008 N MSE C1009 1555 1555 1.36 LINK C MSE C1009 N GLN C1010 1555 1555 1.35 LINK C PRO C1044 N MSE C1045 1555 1555 1.36 LINK C MSE C1045 N SER C1046 1555 1555 1.35 LINK C PHE C1070 N MSE C1071 1555 1555 1.34 LINK C MSE C1071 N LYS C1072 1555 1555 1.35 LINK C ASN C1079 N MSE C1080 1555 1555 1.35 LINK C MSE C1080 N GLY C1081 1555 1555 1.34 LINK C SER D1094 N SEP D1095 1555 1555 1.34 LINK C SEP D1095 N PRO D1096 1555 1555 1.35 LINK C SER E1094 N SEP E1095 1555 1555 1.34 LINK C SEP E1095 N PRO E1096 1555 1555 1.35 LINK C SER F1094 N SEP F1095 1555 1555 1.34 LINK C SEP F1095 N PRO F1096 1555 1555 1.35 SITE 1 AC1 4 ARG A1066 TRP A1068 LYS A1072 SER F1094 SITE 1 AC2 5 SER A 998 ASP A 999 SER A1000 HOH A1201 SITE 2 AC2 5 ASN B1027 SITE 1 AC3 4 ARG B1066 TRP B1068 LYS B1072 SER E1094 SITE 1 AC4 4 ASN A1027 SER C 998 ASP C 999 SER C1000 SITE 1 AC5 4 GLU C1039 SER C1069 MSE C1071 ARG C1075 SITE 1 AC6 4 ARG C1066 TRP C1068 LYS C1072 SER D1094 SITE 1 AC7 7 TRP C 974 LYS C1072 ARG C1075 ASN C1079 SITE 2 AC7 7 ASP D1093 SER D1094 PRO D1097 SITE 1 AC8 7 TRP B 974 LYS B1072 ARG B1075 ASN B1079 SITE 2 AC8 7 ASP E1093 SER E1094 PRO E1097 SITE 1 AC9 7 TRP A 974 ASN A1079 ARG B 975 ASP F1093 SITE 2 AC9 7 SER F1094 PRO F1097 ASN F1098 CRYST1 58.930 58.930 270.460 90.00 90.00 90.00 P 41 21 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016969 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016969 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003697 0.00000