HEADER NUCLEAR PROTEIN 25-FEB-19 6QTM
TITLE CRYSTAL STRUCTURE OF THE SIR4 H-BRCT DOMAIN IN COMPLEX WITH TY5 PS1095
TITLE 2 PEPTIDE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: REGULATORY PROTEIN SIR4;
COMPND 3 CHAIN: A, B, C;
COMPND 4 SYNONYM: SILENT INFORMATION REGULATOR 4;
COMPND 5 ENGINEERED: YES;
COMPND 6 OTHER_DETAILS: FRAGMENT, RESIDUES 961-1085;
COMPND 7 MOL_ID: 2;
COMPND 8 MOLECULE: RIBONUCLEASE H;
COMPND 9 CHAIN: D, E, F;
COMPND 10 EC: 3.1.26.4;
COMPND 11 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C;
SOURCE 3 ORGANISM_TAXID: 559292;
SOURCE 4 GENE: SIR4, ASD1, STE9, UTH2, YDR227W, YD9934.12;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 7 EXPRESSION_SYSTEM_VARIANT: B834;
SOURCE 8 MOL_ID: 2;
SOURCE 9 SYNTHETIC: YES;
SOURCE 10 ORGANISM_SCIENTIFIC: SACCHAROMYCES PARADOXUS;
SOURCE 11 ORGANISM_COMMON: YEAST, SACCHAROMYCES DOUGLASII;
SOURCE 12 ORGANISM_TAXID: 27291
KEYWDS HETEROCHROMATIN, NUCLEAR PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR H.GUT,I.DESHPANDE,J.J.KEUSCH,K.CHALLA,V.IESMANTAVICIUS,S.M.GASSER
REVDAT 5 13-NOV-24 6QTM 1 REMARK
REVDAT 4 11-AUG-21 6QTM 1 COMPND SOURCE DBREF
REVDAT 3 23-OCT-19 6QTM 1 JRNL
REVDAT 2 25-SEP-19 6QTM 1 JRNL
REVDAT 1 18-SEP-19 6QTM 0
JRNL AUTH I.DESHPANDE,J.J.KEUSCH,K.CHALLA,V.IESMANTAVICIUS,S.M.GASSER,
JRNL AUTH 2 H.GUT
JRNL TITL THE SIR4 H-BRCT DOMAIN INTERACTS WITH PHOSPHO-PROTEINS TO
JRNL TITL 2 SEQUESTER AND REPRESS YEAST HETEROCHROMATIN.
JRNL REF EMBO J. V. 38 01744 2019
JRNL REFN ESSN 1460-2075
JRNL PMID 31515872
JRNL DOI 10.15252/EMBJ.2019101744
REMARK 2
REMARK 2 RESOLUTION. 3.00 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER 2.11.5
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,
REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.33
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9
REMARK 3 NUMBER OF REFLECTIONS : 10009
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.206
REMARK 3 R VALUE (WORKING SET) : 0.201
REMARK 3 FREE R VALUE : 0.256
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.500
REMARK 3 FREE R VALUE TEST SET COUNT : 751
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 5
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.35
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.86
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2724
REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2497
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2520
REMARK 3 BIN R VALUE (WORKING SET) : 0.2485
REMARK 3 BIN FREE R VALUE : 0.2640
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 7.49
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 204
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 2971
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 30
REMARK 3 SOLVENT ATOMS : 7
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 81.97
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 91.88
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -23.85180
REMARK 3 B22 (A**2) : -23.85180
REMARK 3 B33 (A**2) : 47.70360
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.663
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.430
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.869
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.837
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 3056 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 4112 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 1103 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : 94 ; 2.000 ; HARMONIC
REMARK 3 GENERAL PLANES : 408 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 3056 ; 20.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 395 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : 1 ; 1.000 ; HARMONIC
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 3428 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.010
REMARK 3 BOND ANGLES (DEGREES) : 1.16
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.26
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 21.30
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 3
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: { A|970 - A|1084 }
REMARK 3 ORIGIN FOR THE GROUP (A): 7.2446 36.1686 1.1474
REMARK 3 T TENSOR
REMARK 3 T11: 0.1639 T22: 0.0682
REMARK 3 T33: 0.0172 T12: -0.0380
REMARK 3 T13: -0.0048 T23: -0.0327
REMARK 3 L TENSOR
REMARK 3 L11: 2.7195 L22: 3.0219
REMARK 3 L33: 7.1759 L12: 0.2721
REMARK 3 L13: -1.7530 L23: -0.1366
REMARK 3 S TENSOR
REMARK 3 S11: 0.2022 S12: 0.1904 S13: 0.3200
REMARK 3 S21: 0.1775 S22: 0.0467 S23: -0.1301
REMARK 3 S31: -0.8231 S32: -0.0325 S33: -0.2488
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: { B|970 - B|1084 }
REMARK 3 ORIGIN FOR THE GROUP (A): 1.7721 19.2720 -20.3347
REMARK 3 T TENSOR
REMARK 3 T11: 0.0999 T22: 0.2973
REMARK 3 T33: 0.1092 T12: -0.0246
REMARK 3 T13: -0.0175 T23: -0.1069
REMARK 3 L TENSOR
REMARK 3 L11: 1.9461 L22: 3.2684
REMARK 3 L33: 7.5714 L12: 0.5701
REMARK 3 L13: -0.0442 L23: 0.6195
REMARK 3 S TENSOR
REMARK 3 S11: -0.0683 S12: 0.3161 S13: -0.2912
REMARK 3 S21: 0.0799 S22: 0.0770 S23: 0.0374
REMARK 3 S31: 0.5578 S32: -0.0527 S33: -0.0087
REMARK 3
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: { C|* }
REMARK 3 ORIGIN FOR THE GROUP (A): -3.0449 34.7587 -43.3792
REMARK 3 T TENSOR
REMARK 3 T11: 0.1518 T22: 0.3748
REMARK 3 T33: 0.2213 T12: 0.1225
REMARK 3 T13: -0.1061 T23: -0.0372
REMARK 3 L TENSOR
REMARK 3 L11: 1.2209 L22: 2.0190
REMARK 3 L33: 7.3288 L12: -0.4044
REMARK 3 L13: -0.2623 L23: 0.5372
REMARK 3 S TENSOR
REMARK 3 S11: -0.1228 S12: -0.1355 S13: 0.3327
REMARK 3 S21: -0.1512 S22: 0.1300 S23: 0.0715
REMARK 3 S31: -0.6178 S32: -0.6683 S33: -0.0072
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6QTM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-FEB-19.
REMARK 100 THE DEPOSITION ID IS D_1292100841.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 30-JAN-17
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 5.6
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SLS
REMARK 200 BEAMLINE : X06DA
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.000
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : XSCALE
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10009
REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000
REMARK 200 RESOLUTION RANGE LOW (A) : 50.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1
REMARK 200 DATA REDUNDANCY : 4.200
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : 0.18100
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.7000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.08
REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.100
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 47.52
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M AMMONIUM SULFATE 0.2 M SODIUM
REMARK 280 POTASSIUM TARTRATE 0.1 M TRI-SODIUM CITRATE PH 5.6, VAPOR
REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z+1/2
REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4
REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4
REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4
REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4
REMARK 290 7555 Y,X,-Z
REMARK 290 8555 -Y,-X,-Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 135.23000
REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 29.46500
REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 29.46500
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 67.61500
REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 29.46500
REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 29.46500
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 202.84500
REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 29.46500
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.46500
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 67.61500
REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 29.46500
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.46500
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 202.84500
REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 135.23000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2, 3
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 1180 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 7540 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, F
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 1110 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 7160 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 3
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 1380 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 7190 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A 959
REMARK 465 PRO A 960
REMARK 465 LYS A 961
REMARK 465 PRO A 962
REMARK 465 LYS A 963
REMARK 465 ASN A 964
REMARK 465 THR A 965
REMARK 465 LYS A 966
REMARK 465 GLU A 967
REMARK 465 ASN A 968
REMARK 465 PRO A 1060
REMARK 465 ASP A 1061
REMARK 465 ALA A 1062
REMARK 465 LYS A 1063
REMARK 465 GLN A 1085
REMARK 465 GLY B 959
REMARK 465 PRO B 960
REMARK 465 LYS B 961
REMARK 465 PRO B 962
REMARK 465 LYS B 963
REMARK 465 ASN B 964
REMARK 465 THR B 965
REMARK 465 LYS B 966
REMARK 465 GLU B 967
REMARK 465 ASN B 968
REMARK 465 ALA B 1062
REMARK 465 LYS B 1063
REMARK 465 GLN B 1085
REMARK 465 GLY C 959
REMARK 465 PRO C 960
REMARK 465 LYS C 961
REMARK 465 PRO C 962
REMARK 465 LYS C 963
REMARK 465 ASN C 964
REMARK 465 THR C 965
REMARK 465 LYS C 966
REMARK 465 GLU C 967
REMARK 465 ASN C 968
REMARK 465 LEU C 969
REMARK 465 ASN C 1058
REMARK 465 LYS C 1059
REMARK 465 PRO C 1060
REMARK 465 ASP C 1061
REMARK 465 GLN C 1085
REMARK 465 GLU D 1087
REMARK 465 SER D 1088
REMARK 465 PRO D 1089
REMARK 465 PRO D 1090
REMARK 465 ASN D 1098
REMARK 465 THR D 1099
REMARK 465 SER D 1100
REMARK 465 PHE D 1101
REMARK 465 ASN D 1102
REMARK 465 ALA D 1103
REMARK 465 GLU E 1087
REMARK 465 SER E 1088
REMARK 465 PRO E 1089
REMARK 465 PRO E 1090
REMARK 465 ASN E 1098
REMARK 465 THR E 1099
REMARK 465 SER E 1100
REMARK 465 PHE E 1101
REMARK 465 ASN E 1102
REMARK 465 ALA E 1103
REMARK 465 GLU F 1087
REMARK 465 SER F 1088
REMARK 465 PRO F 1089
REMARK 465 PRO F 1090
REMARK 465 PHE F 1101
REMARK 465 ASN F 1102
REMARK 465 ALA F 1103
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 LYS A 971 -97.50 84.65
REMARK 500 GLU A1030 50.29 -95.65
REMARK 500 GLU B1030 50.92 -95.12
REMARK 500 GLU C 996 74.19 59.00
REMARK 500 LYS C1063 65.91 28.11
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1101
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1102
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 1101
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 1101
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 1102
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 1103
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for Ligand residues SEP D 1095
REMARK 800 through PRO D 1096 bound to SER D 1094
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for Ligand residues SEP E 1095
REMARK 800 through PRO E 1096 bound to SER E 1094
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC9
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for Ligand residues SEP F 1095
REMARK 800 through PRO F 1096 bound to SER F 1094
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 6QSZ RELATED DB: PDB
DBREF 6QTM A 961 1085 UNP P11978 SIR4_YEAST 961 1085
DBREF 6QTM B 961 1085 UNP P11978 SIR4_YEAST 961 1085
DBREF 6QTM C 961 1085 UNP P11978 SIR4_YEAST 961 1085
DBREF 6QTM D 1087 1103 UNP O42838 O42838_SACPA 1087 1103
DBREF 6QTM E 1087 1103 UNP O42838 O42838_SACPA 1087 1103
DBREF 6QTM F 1087 1103 UNP O42838 O42838_SACPA 1087 1103
SEQADV 6QTM GLY A 959 UNP P11978 EXPRESSION TAG
SEQADV 6QTM PRO A 960 UNP P11978 EXPRESSION TAG
SEQADV 6QTM GLY B 959 UNP P11978 EXPRESSION TAG
SEQADV 6QTM PRO B 960 UNP P11978 EXPRESSION TAG
SEQADV 6QTM GLY C 959 UNP P11978 EXPRESSION TAG
SEQADV 6QTM PRO C 960 UNP P11978 EXPRESSION TAG
SEQRES 1 A 127 GLY PRO LYS PRO LYS ASN THR LYS GLU ASN LEU SER LYS
SEQRES 2 A 127 SER SER TRP ARG GLN GLU TRP LEU ALA ASN LEU LYS LEU
SEQRES 3 A 127 ILE SER VAL SER LEU VAL ASP GLU PHE PRO SER GLU LEU
SEQRES 4 A 127 SER ASP SER ASP ARG GLN ILE ILE ASN GLU LYS MSE GLN
SEQRES 5 A 127 LEU LEU LYS ASP ILE PHE ALA ASN ASN LEU LYS SER ALA
SEQRES 6 A 127 ILE SER ASN ASN PHE ARG GLU SER ASP ILE ILE ILE LEU
SEQRES 7 A 127 LYS GLY GLU ILE GLU ASP TYR PRO MSE SER SER GLU ILE
SEQRES 8 A 127 LYS ILE TYR TYR ASN GLU LEU GLN ASN LYS PRO ASP ALA
SEQRES 9 A 127 LYS LYS ALA ARG PHE TRP SER PHE MSE LYS THR GLN ARG
SEQRES 10 A 127 PHE VAL SER ASN MSE GLY PHE ASP ILE GLN
SEQRES 1 B 127 GLY PRO LYS PRO LYS ASN THR LYS GLU ASN LEU SER LYS
SEQRES 2 B 127 SER SER TRP ARG GLN GLU TRP LEU ALA ASN LEU LYS LEU
SEQRES 3 B 127 ILE SER VAL SER LEU VAL ASP GLU PHE PRO SER GLU LEU
SEQRES 4 B 127 SER ASP SER ASP ARG GLN ILE ILE ASN GLU LYS MSE GLN
SEQRES 5 B 127 LEU LEU LYS ASP ILE PHE ALA ASN ASN LEU LYS SER ALA
SEQRES 6 B 127 ILE SER ASN ASN PHE ARG GLU SER ASP ILE ILE ILE LEU
SEQRES 7 B 127 LYS GLY GLU ILE GLU ASP TYR PRO MSE SER SER GLU ILE
SEQRES 8 B 127 LYS ILE TYR TYR ASN GLU LEU GLN ASN LYS PRO ASP ALA
SEQRES 9 B 127 LYS LYS ALA ARG PHE TRP SER PHE MSE LYS THR GLN ARG
SEQRES 10 B 127 PHE VAL SER ASN MSE GLY PHE ASP ILE GLN
SEQRES 1 C 127 GLY PRO LYS PRO LYS ASN THR LYS GLU ASN LEU SER LYS
SEQRES 2 C 127 SER SER TRP ARG GLN GLU TRP LEU ALA ASN LEU LYS LEU
SEQRES 3 C 127 ILE SER VAL SER LEU VAL ASP GLU PHE PRO SER GLU LEU
SEQRES 4 C 127 SER ASP SER ASP ARG GLN ILE ILE ASN GLU LYS MSE GLN
SEQRES 5 C 127 LEU LEU LYS ASP ILE PHE ALA ASN ASN LEU LYS SER ALA
SEQRES 6 C 127 ILE SER ASN ASN PHE ARG GLU SER ASP ILE ILE ILE LEU
SEQRES 7 C 127 LYS GLY GLU ILE GLU ASP TYR PRO MSE SER SER GLU ILE
SEQRES 8 C 127 LYS ILE TYR TYR ASN GLU LEU GLN ASN LYS PRO ASP ALA
SEQRES 9 C 127 LYS LYS ALA ARG PHE TRP SER PHE MSE LYS THR GLN ARG
SEQRES 10 C 127 PHE VAL SER ASN MSE GLY PHE ASP ILE GLN
SEQRES 1 D 17 GLU SER PRO PRO SER LEU ASP SER SEP PRO PRO ASN THR
SEQRES 2 D 17 SER PHE ASN ALA
SEQRES 1 E 17 GLU SER PRO PRO SER LEU ASP SER SEP PRO PRO ASN THR
SEQRES 2 E 17 SER PHE ASN ALA
SEQRES 1 F 17 GLU SER PRO PRO SER LEU ASP SER SEP PRO PRO ASN THR
SEQRES 2 F 17 SER PHE ASN ALA
MODRES 6QTM MSE A 1009 MET MODIFIED RESIDUE
MODRES 6QTM MSE A 1045 MET MODIFIED RESIDUE
MODRES 6QTM MSE A 1071 MET MODIFIED RESIDUE
MODRES 6QTM MSE A 1080 MET MODIFIED RESIDUE
MODRES 6QTM MSE B 1009 MET MODIFIED RESIDUE
MODRES 6QTM MSE B 1045 MET MODIFIED RESIDUE
MODRES 6QTM MSE B 1071 MET MODIFIED RESIDUE
MODRES 6QTM MSE B 1080 MET MODIFIED RESIDUE
MODRES 6QTM MSE C 1009 MET MODIFIED RESIDUE
MODRES 6QTM MSE C 1045 MET MODIFIED RESIDUE
MODRES 6QTM MSE C 1071 MET MODIFIED RESIDUE
MODRES 6QTM MSE C 1080 MET MODIFIED RESIDUE
MODRES 6QTM SEP D 1095 SER MODIFIED RESIDUE
MODRES 6QTM SEP E 1095 SER MODIFIED RESIDUE
MODRES 6QTM SEP F 1095 SER MODIFIED RESIDUE
HET MSE A1009 8
HET MSE A1045 16
HET MSE A1071 8
HET MSE A1080 8
HET MSE B1009 8
HET MSE B1045 8
HET MSE B1071 8
HET MSE B1080 8
HET MSE C1009 8
HET MSE C1045 8
HET MSE C1071 8
HET MSE C1080 8
HET SEP D1095 10
HET SEP E1095 10
HET SEP F1095 10
HET SO4 A1101 5
HET SO4 A1102 5
HET SO4 B1101 5
HET SO4 C1101 5
HET SO4 C1102 5
HET SO4 C1103 5
HETNAM MSE SELENOMETHIONINE
HETNAM SEP PHOSPHOSERINE
HETNAM SO4 SULFATE ION
HETSYN SEP PHOSPHONOSERINE
FORMUL 1 MSE 12(C5 H11 N O2 SE)
FORMUL 4 SEP 3(C3 H8 N O6 P)
FORMUL 7 SO4 6(O4 S 2-)
FORMUL 13 HOH *7(H2 O)
HELIX 1 AA1 LYS A 971 LYS A 983 1 13
HELIX 2 AA2 SER A 998 ASN A 1019 1 22
HELIX 3 AA3 GLU A 1039 TYR A 1043 5 5
HELIX 4 AA4 SER A 1047 LEU A 1056 1 10
HELIX 5 AA5 SER A 1069 GLY A 1081 1 13
HELIX 6 AA6 SER B 970 LYS B 983 1 14
HELIX 7 AA7 SER B 998 ASN B 1019 1 22
HELIX 8 AA8 ASN B 1027 SER B 1031 5 5
HELIX 9 AA9 GLU B 1039 TYR B 1043 5 5
HELIX 10 AB1 SER B 1047 LYS B 1059 1 13
HELIX 11 AB2 SER B 1069 MSE B 1080 1 12
HELIX 12 AB3 LYS C 971 LYS C 983 1 13
HELIX 13 AB4 SER C 998 ASN C 1019 1 22
HELIX 14 AB5 GLU C 1039 TYR C 1043 5 5
HELIX 15 AB6 SER C 1047 GLN C 1057 1 11
HELIX 16 AB7 SER C 1069 MSE C 1080 1 12
SHEET 1 AA1 4 ALA A1023 SER A1025 0
SHEET 2 AA1 4 SER A 986 LEU A 989 1 N VAL A 987 O ALA A1023
SHEET 3 AA1 4 ILE A1033 ILE A1035 1 O ILE A1035 N SER A 988
SHEET 4 AA1 4 ARG A1066 TRP A1068 1 O ARG A1066 N ILE A1034
SHEET 1 AA2 4 ALA B1023 SER B1025 0
SHEET 2 AA2 4 SER B 986 LEU B 989 1 N VAL B 987 O ALA B1023
SHEET 3 AA2 4 ILE B1033 ILE B1035 1 O ILE B1035 N SER B 988
SHEET 4 AA2 4 ARG B1066 TRP B1068 1 O TRP B1068 N ILE B1034
SHEET 1 AA3 4 ALA C1023 SER C1025 0
SHEET 2 AA3 4 SER C 986 LEU C 989 1 N VAL C 987 O ALA C1023
SHEET 3 AA3 4 ILE C1033 ILE C1035 1 O ILE C1033 N SER C 988
SHEET 4 AA3 4 ARG C1066 TRP C1068 1 O ARG C1066 N ILE C1034
LINK C LYS A1008 N MSE A1009 1555 1555 1.35
LINK C MSE A1009 N GLN A1010 1555 1555 1.35
LINK C PRO A1044 N AMSE A1045 1555 1555 1.34
LINK C PRO A1044 N BMSE A1045 1555 1555 1.35
LINK C AMSE A1045 N SER A1046 1555 1555 1.34
LINK C BMSE A1045 N SER A1046 1555 1555 1.35
LINK C PHE A1070 N MSE A1071 1555 1555 1.33
LINK C MSE A1071 N LYS A1072 1555 1555 1.36
LINK C ASN A1079 N MSE A1080 1555 1555 1.33
LINK C MSE A1080 N GLY A1081 1555 1555 1.35
LINK C LYS B1008 N MSE B1009 1555 1555 1.34
LINK C MSE B1009 N GLN B1010 1555 1555 1.36
LINK C PRO B1044 N MSE B1045 1555 1555 1.35
LINK C MSE B1045 N SER B1046 1555 1555 1.34
LINK C PHE B1070 N MSE B1071 1555 1555 1.36
LINK C MSE B1071 N LYS B1072 1555 1555 1.36
LINK C ASN B1079 N MSE B1080 1555 1555 1.36
LINK C MSE B1080 N GLY B1081 1555 1555 1.34
LINK C LYS C1008 N MSE C1009 1555 1555 1.36
LINK C MSE C1009 N GLN C1010 1555 1555 1.35
LINK C PRO C1044 N MSE C1045 1555 1555 1.36
LINK C MSE C1045 N SER C1046 1555 1555 1.35
LINK C PHE C1070 N MSE C1071 1555 1555 1.34
LINK C MSE C1071 N LYS C1072 1555 1555 1.35
LINK C ASN C1079 N MSE C1080 1555 1555 1.35
LINK C MSE C1080 N GLY C1081 1555 1555 1.34
LINK C SER D1094 N SEP D1095 1555 1555 1.34
LINK C SEP D1095 N PRO D1096 1555 1555 1.35
LINK C SER E1094 N SEP E1095 1555 1555 1.34
LINK C SEP E1095 N PRO E1096 1555 1555 1.35
LINK C SER F1094 N SEP F1095 1555 1555 1.34
LINK C SEP F1095 N PRO F1096 1555 1555 1.35
SITE 1 AC1 4 ARG A1066 TRP A1068 LYS A1072 SER F1094
SITE 1 AC2 5 SER A 998 ASP A 999 SER A1000 HOH A1201
SITE 2 AC2 5 ASN B1027
SITE 1 AC3 4 ARG B1066 TRP B1068 LYS B1072 SER E1094
SITE 1 AC4 4 ASN A1027 SER C 998 ASP C 999 SER C1000
SITE 1 AC5 4 GLU C1039 SER C1069 MSE C1071 ARG C1075
SITE 1 AC6 4 ARG C1066 TRP C1068 LYS C1072 SER D1094
SITE 1 AC7 7 TRP C 974 LYS C1072 ARG C1075 ASN C1079
SITE 2 AC7 7 ASP D1093 SER D1094 PRO D1097
SITE 1 AC8 7 TRP B 974 LYS B1072 ARG B1075 ASN B1079
SITE 2 AC8 7 ASP E1093 SER E1094 PRO E1097
SITE 1 AC9 7 TRP A 974 ASN A1079 ARG B 975 ASP F1093
SITE 2 AC9 7 SER F1094 PRO F1097 ASN F1098
CRYST1 58.930 58.930 270.460 90.00 90.00 90.00 P 41 21 2 24
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.016969 0.000000 0.000000 0.00000
SCALE2 0.000000 0.016969 0.000000 0.00000
SCALE3 0.000000 0.000000 0.003697 0.00000