HEADER OXIDOREDUCTASE 26-FEB-19 6QU7 TITLE CRYSTAL STRUCTURE OF HUMAN DHODH IN COMPLEX WITH BAY 2402234 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROOROTATE DEHYDROGENASE (QUINONE), MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DHODEHASE,DIHYDROOROTATE OXIDASE; COMPND 5 EC: 1.3.5.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DHODH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DHODH, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.FRIBERG,S.GRADL REVDAT 3 15-MAY-24 6QU7 1 REMARK REVDAT 2 16-OCT-19 6QU7 1 JRNL REVDAT 1 05-JUN-19 6QU7 0 JRNL AUTH S.CHRISTIAN,C.MERZ,L.EVANS,S.GRADL,H.SEIDEL,A.FRIBERG, JRNL AUTH 2 A.EHEIM,P.LEJEUNE,K.BRZEZINKA,K.ZIMMERMANN,S.FERRARA, JRNL AUTH 3 H.MEYER,R.LESCHE,D.STOECKIGT,M.BAUSER,A.HAEGEBARTH, JRNL AUTH 4 D.B.SYKES,D.T.SCADDEN,J.A.LOSMAN,A.JANZER JRNL TITL THE NOVEL DIHYDROOROTATE DEHYDROGENASE (DHODH) INHIBITOR BAY JRNL TITL 2 2402234 TRIGGERS DIFFERENTIATION AND IS EFFECTIVE IN THE JRNL TITL 3 TREATMENT OF MYELOID MALIGNANCIES. JRNL REF LEUKEMIA V. 33 2403 2019 JRNL REFN ESSN 1476-5551 JRNL PMID 30940908 JRNL DOI 10.1038/S41375-019-0461-5 REMARK 2 REMARK 2 RESOLUTION. 1.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 87219 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.173 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.400 REMARK 3 FREE R VALUE TEST SET COUNT : 2100 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.52 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6146 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.12 REMARK 3 BIN R VALUE (WORKING SET) : 0.2960 REMARK 3 BIN FREE R VALUE SET COUNT : 148 REMARK 3 BIN FREE R VALUE : 0.2900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2768 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 103 REMARK 3 SOLVENT ATOMS : 194 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.16000 REMARK 3 B22 (A**2) : 0.16000 REMARK 3 B33 (A**2) : -0.53000 REMARK 3 B12 (A**2) : 0.08000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.054 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.051 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.038 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.511 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3011 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2920 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4087 ; 1.446 ; 2.019 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6680 ; 0.955 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 379 ; 5.710 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 129 ;34.838 ;22.946 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 504 ;11.206 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;17.475 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 450 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3433 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 670 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1502 ; 1.342 ; 1.627 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1497 ; 1.319 ; 1.621 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1883 ; 1.593 ; 2.426 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1884 ; 1.594 ; 2.427 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1508 ; 1.695 ; 1.979 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1509 ; 1.694 ; 1.980 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2205 ; 1.930 ; 2.848 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3535 ; 2.598 ;14.010 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3465 ; 2.263 ;13.662 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5930 ; 1.793 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 57 ;24.422 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 6015 ; 4.766 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 31 A 403 REMARK 3 ORIGIN FOR THE GROUP (A): 30.3827 -20.7291 -9.7555 REMARK 3 T TENSOR REMARK 3 T11: 0.0204 T22: 0.0128 REMARK 3 T33: 0.0066 T12: -0.0151 REMARK 3 T13: -0.0006 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 0.6377 L22: 0.4406 REMARK 3 L33: 0.6091 L12: 0.2218 REMARK 3 L13: 0.3511 L23: 0.2163 REMARK 3 S TENSOR REMARK 3 S11: -0.0026 S12: -0.0039 S13: 0.0481 REMARK 3 S21: 0.0315 S22: -0.0143 S23: -0.0142 REMARK 3 S31: -0.0224 S32: -0.0017 S33: 0.0169 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6QU7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1292100874. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918400 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 89320 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.520 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 11.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.8900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.52 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.3 M NH4SO4, 0.1 M NA-ACETATE, 30% REMARK 280 GLYCEROL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.66733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.83367 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 40.83367 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 81.66733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 72 REMARK 465 LEU A 224 REMARK 465 GLN A 225 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 677 O HOH A 677 6554 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 41 -60.12 -130.17 REMARK 500 ASP A 99 78.91 -112.49 REMARK 500 ARG A 133 12.21 -140.40 REMARK 500 ASP A 190 89.60 -150.86 REMARK 500 TYR A 356 -61.88 -136.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ORO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JJE A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 409 DBREF 6QU7 A 31 396 UNP Q02127 PYRD_HUMAN 30 395 SEQRES 1 A 366 ALA THR GLY ASP GLU ARG PHE TYR ALA GLU HIS LEU MET SEQRES 2 A 366 PRO THR LEU GLN GLY LEU LEU ASP PRO GLU SER ALA HIS SEQRES 3 A 366 ARG LEU ALA VAL ARG PHE THR SER LEU GLY LEU LEU PRO SEQRES 4 A 366 ARG ALA ARG PHE GLN ASP SER ASP MET LEU GLU VAL ARG SEQRES 5 A 366 VAL LEU GLY HIS LYS PHE ARG ASN PRO VAL GLY ILE ALA SEQRES 6 A 366 ALA GLY PHE ASP LYS HIS GLY GLU ALA VAL ASP GLY LEU SEQRES 7 A 366 TYR LYS MET GLY PHE GLY PHE VAL GLU ILE GLY SER VAL SEQRES 8 A 366 THR PRO LYS PRO GLN GLU GLY ASN PRO ARG PRO ARG VAL SEQRES 9 A 366 PHE ARG LEU PRO GLU ASP GLN ALA VAL ILE ASN ARG TYR SEQRES 10 A 366 GLY PHE ASN SER HIS GLY LEU SER VAL VAL GLU HIS ARG SEQRES 11 A 366 LEU ARG ALA ARG GLN GLN LYS GLN ALA LYS LEU THR GLU SEQRES 12 A 366 ASP GLY LEU PRO LEU GLY VAL ASN LEU GLY LYS ASN LYS SEQRES 13 A 366 THR SER VAL ASP ALA ALA GLU ASP TYR ALA GLU GLY VAL SEQRES 14 A 366 ARG VAL LEU GLY PRO LEU ALA ASP TYR LEU VAL VAL ASN SEQRES 15 A 366 VAL SER SER PRO ASN THR ALA GLY LEU ARG SER LEU GLN SEQRES 16 A 366 GLY LYS ALA GLU LEU ARG ARG LEU LEU THR LYS VAL LEU SEQRES 17 A 366 GLN GLU ARG ASP GLY LEU ARG ARG VAL HIS ARG PRO ALA SEQRES 18 A 366 VAL LEU VAL LYS ILE ALA PRO ASP LEU THR SER GLN ASP SEQRES 19 A 366 LYS GLU ASP ILE ALA SER VAL VAL LYS GLU LEU GLY ILE SEQRES 20 A 366 ASP GLY LEU ILE VAL THR ASN THR THR VAL SER ARG PRO SEQRES 21 A 366 ALA GLY LEU GLN GLY ALA LEU ARG SER GLU THR GLY GLY SEQRES 22 A 366 LEU SER GLY LYS PRO LEU ARG ASP LEU SER THR GLN THR SEQRES 23 A 366 ILE ARG GLU MET TYR ALA LEU THR GLN GLY ARG VAL PRO SEQRES 24 A 366 ILE ILE GLY VAL GLY GLY VAL SER SER GLY GLN ASP ALA SEQRES 25 A 366 LEU GLU LYS ILE ARG ALA GLY ALA SER LEU VAL GLN LEU SEQRES 26 A 366 TYR THR ALA LEU THR PHE TRP GLY PRO PRO VAL VAL GLY SEQRES 27 A 366 LYS VAL LYS ARG GLU LEU GLU ALA LEU LEU LYS GLU GLN SEQRES 28 A 366 GLY PHE GLY GLY VAL THR ASP ALA ILE GLY ALA ASP HIS SEQRES 29 A 366 ARG ARG HET ORO A 401 11 HET FMN A 402 31 HET JJE A 403 35 HET SO4 A 404 5 HET SO4 A 405 5 HET ACT A 406 4 HET ACT A 407 4 HET ACT A 408 4 HET ACT A 409 4 HETNAM ORO OROTIC ACID HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM JJE ~{N}-(2-CHLORANYL-6-FLUORANYL-PHENYL)-4-[4-ETHYL-3- HETNAM 2 JJE (HYDROXYMETHYL)-5-OXIDANYLIDENE-1,2,4-TRIAZOL-1-YL]-5- HETNAM 3 JJE FLUORANYL-2-[(2~{S})-1,1,1-TRIS(FLUORANYL)PROPAN-2- HETNAM 4 JJE YL]OXY-BENZAMIDE HETNAM SO4 SULFATE ION HETNAM ACT ACETATE ION HETSYN FMN RIBOFLAVIN MONOPHOSPHATE HETSYN JJE BAY 2402234 FORMUL 2 ORO C5 H4 N2 O4 FORMUL 3 FMN C17 H21 N4 O9 P FORMUL 4 JJE C21 H18 CL F5 N4 O4 FORMUL 5 SO4 2(O4 S 2-) FORMUL 7 ACT 4(C2 H3 O2 1-) FORMUL 11 HOH *194(H2 O) HELIX 1 AA1 THR A 32 HIS A 41 1 10 HELIX 2 AA2 HIS A 41 LEU A 50 1 10 HELIX 3 AA3 ASP A 51 LEU A 65 1 15 HELIX 4 AA4 SER A 76 GLU A 80 5 5 HELIX 5 AA5 ALA A 104 GLY A 112 1 9 HELIX 6 AA6 PRO A 138 ASP A 140 5 3 HELIX 7 AA7 GLY A 153 ALA A 163 1 11 HELIX 8 AA8 ARG A 164 ASP A 174 1 11 HELIX 9 AA9 ASP A 190 GLY A 203 1 14 HELIX 10 AB1 PRO A 204 ALA A 206 5 3 HELIX 11 AB2 LYS A 227 GLY A 243 1 17 HELIX 12 AB3 ARG A 245 ARG A 249 5 5 HELIX 13 AB4 THR A 261 GLY A 276 1 16 HELIX 14 AB5 LEU A 309 THR A 324 1 16 HELIX 15 AB6 SER A 338 GLY A 349 1 12 HELIX 16 AB7 TYR A 356 GLY A 363 1 8 HELIX 17 AB8 PRO A 365 GLN A 381 1 17 HELIX 18 AB9 GLY A 385 ILE A 390 1 6 HELIX 19 AC1 GLY A 391 ARG A 396 5 6 SHEET 1 AA1 2 VAL A 81 VAL A 83 0 SHEET 2 AA1 2 HIS A 86 PHE A 88 -1 O PHE A 88 N VAL A 81 SHEET 1 AA2 9 VAL A 92 ILE A 94 0 SHEET 2 AA2 9 PHE A 115 VAL A 121 1 O PHE A 115 N ILE A 94 SHEET 3 AA2 9 LEU A 178 LEU A 182 1 O GLY A 179 N VAL A 116 SHEET 4 AA2 9 TYR A 208 ASN A 212 1 O VAL A 210 N LEU A 182 SHEET 5 AA2 9 ALA A 251 ILE A 256 1 O LEU A 253 N LEU A 209 SHEET 6 AA2 9 GLY A 279 VAL A 282 1 O ILE A 281 N ILE A 256 SHEET 7 AA2 9 ILE A 330 VAL A 333 1 O ILE A 331 N VAL A 282 SHEET 8 AA2 9 LEU A 352 LEU A 355 1 O LEU A 352 N GLY A 332 SHEET 9 AA2 9 VAL A 92 ILE A 94 1 N GLY A 93 O VAL A 353 SHEET 1 AA3 3 VAL A 134 LEU A 137 0 SHEET 2 AA3 3 ALA A 142 ASN A 145 -1 O ILE A 144 N PHE A 135 SHEET 3 AA3 3 GLY A 303 GLY A 306 -1 O GLY A 303 N ASN A 145 CISPEP 1 GLY A 119 SER A 120 0 6.06 CISPEP 2 ARG A 131 PRO A 132 0 5.78 CISPEP 3 VAL A 282 THR A 283 0 10.81 SITE 1 AC1 11 LYS A 100 ASN A 145 TYR A 147 GLY A 148 SITE 2 AC1 11 PHE A 149 ASN A 212 SER A 215 ASN A 217 SITE 3 AC1 11 ASN A 284 THR A 285 FMN A 402 SITE 1 AC2 26 ALA A 95 ALA A 96 GLY A 97 LYS A 100 SITE 2 AC2 26 GLY A 119 SER A 120 ASN A 145 TYR A 147 SITE 3 AC2 26 ASN A 181 ASN A 212 LYS A 255 THR A 283 SITE 4 AC2 26 ASN A 284 THR A 285 SER A 305 GLY A 306 SITE 5 AC2 26 LEU A 309 VAL A 333 GLY A 334 GLY A 335 SITE 6 AC2 26 LEU A 355 TYR A 356 THR A 357 ORO A 401 SITE 7 AC2 26 HOH A 513 HOH A 556 SITE 1 AC3 20 TYR A 38 MET A 43 LEU A 46 GLN A 47 SITE 2 AC3 20 LEU A 50 PRO A 52 ALA A 55 HIS A 56 SITE 3 AC3 20 LEU A 58 ALA A 59 PHE A 62 THR A 63 SITE 4 AC3 20 LEU A 67 LEU A 68 PHE A 98 ARG A 136 SITE 5 AC3 20 TYR A 356 THR A 360 PRO A 364 HOH A 575 SITE 1 AC4 3 ARG A 245 VAL A 247 HIS A 248 SITE 1 AC5 2 ARG A 246 ARG A 249 SITE 1 AC6 7 LYS A 307 PRO A 308 ASP A 311 THR A 314 SITE 2 AC6 7 GLN A 315 ARG A 318 HOH A 505 SITE 1 AC7 5 ALA A 169 THR A 172 LEU A 205 ASP A 207 SITE 2 AC7 5 HOH A 506 SITE 1 AC8 2 ARG A 57 HIS A 152 SITE 1 AC9 3 LYS A 167 LYS A 227 ARG A 231 CRYST1 90.659 90.659 122.501 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011030 0.006368 0.000000 0.00000 SCALE2 0.000000 0.012737 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008163 0.00000