HEADER HYDROLASE 04-MAR-19 6QVO TITLE CRYSTAL STRUCTURE OF HUMAN MTH1 IN COMPLEX WITH N6-METHYL-DAMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: 7,8-DIHYDRO-8-OXOGUANINE TRIPHOSPHATASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: 2-HYDROXY-DATP DIPHOSPHATASE,8-OXO-DGTPASE,NUCLEOSIDE COMPND 5 DIPHOSPHATE-LINKED MOIETY X MOTIF 1,NUDIX MOTIF 1; COMPND 6 EC: 3.6.1.55,3.6.1.56; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NUDT1, MTH1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ----, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR E.SCALETTI,K.S.VALLIN,L.BRAUTIGAM,A.SARNO,U.WARPMAN BERGLUND, AUTHOR 2 T.HELLEDAY,P.STENMARK,A.S.JEMTH REVDAT 3 15-MAY-24 6QVO 1 REMARK REVDAT 2 30-SEP-20 6QVO 1 JRNL REVDAT 1 18-MAR-20 6QVO 0 JRNL AUTH E.R.SCALETTI,K.S.VALLIN,L.BRAUTIGAM,A.SARNO, JRNL AUTH 2 U.WARPMAN BERGLUND,T.HELLEDAY,P.STENMARK,A.S.JEMTH JRNL TITL MUTT HOMOLOGUE 1 (MTH1) REMOVES N6-METHYL-DATP FROM THE DNTP JRNL TITL 2 POOL. JRNL REF J.BIOL.CHEM. V. 295 4761 2020 JRNL REFN ESSN 1083-351X JRNL PMID 32144205 JRNL DOI 10.1074/JBC.RA120.012636 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 19444 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.240 REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 971 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.51 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1449 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.3890 REMARK 3 BIN FREE R VALUE SET COUNT : 67 REMARK 3 BIN FREE R VALUE : 0.3790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4929 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 128 REMARK 3 SOLVENT ATOMS : 87 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 9.64000 REMARK 3 B22 (A**2) : -2.34000 REMARK 3 B33 (A**2) : -7.34000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.89000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.366 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.411 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.439 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5193 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4649 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7040 ; 1.281 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10790 ; 0.840 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 610 ; 6.048 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 255 ;34.667 ;24.353 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 856 ;14.474 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;12.390 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 734 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5726 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1114 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2449 ; 2.508 ; 5.669 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2448 ; 2.508 ; 5.668 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3056 ; 4.292 ; 8.495 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3057 ; 4.292 ; 8.497 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2744 ; 2.220 ; 5.843 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2745 ; 2.220 ; 5.843 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3985 ; 3.814 ; 8.682 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5383 ; 6.946 ;61.256 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5384 ; 6.946 ;61.253 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 6 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 3 152 B 3 152 9304 0.05 0.05 REMARK 3 2 A 3 155 C 3 155 9522 0.04 0.05 REMARK 3 3 A 3 153 D 3 153 9262 0.05 0.05 REMARK 3 4 B 3 152 C 3 152 9406 0.05 0.05 REMARK 3 5 B 3 152 D 3 152 9286 0.05 0.05 REMARK 3 6 C 3 153 D 3 153 9358 0.04 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6QVO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1292100982. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.07 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20436 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 58.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.55 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE PH 3.5, 26 % REMARK 280 PEG3350, 0.2 M LISO4, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.55550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -40 REMARK 465 TYR A -39 REMARK 465 TRP A -38 REMARK 465 SER A -37 REMARK 465 ASN A -36 REMARK 465 GLN A -35 REMARK 465 ILE A -34 REMARK 465 THR A -33 REMARK 465 ARG A -32 REMARK 465 ARG A -31 REMARK 465 LEU A -30 REMARK 465 GLY A -29 REMARK 465 GLU A -28 REMARK 465 ARG A -27 REMARK 465 VAL A -26 REMARK 465 GLN A -25 REMARK 465 GLY A -24 REMARK 465 PHE A -23 REMARK 465 MET A -22 REMARK 465 SER A -21 REMARK 465 GLY A -20 REMARK 465 ILE A -19 REMARK 465 SER A -18 REMARK 465 PRO A -17 REMARK 465 GLN A -16 REMARK 465 GLN A -15 REMARK 465 MET A -14 REMARK 465 GLY A -13 REMARK 465 GLU A -12 REMARK 465 PRO A -11 REMARK 465 GLU A -10 REMARK 465 GLY A -9 REMARK 465 SER A -8 REMARK 465 TRP A -7 REMARK 465 SER A -6 REMARK 465 GLY A -5 REMARK 465 LYS A -4 REMARK 465 ASN A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 THR A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 MET B -40 REMARK 465 TYR B -39 REMARK 465 TRP B -38 REMARK 465 SER B -37 REMARK 465 ASN B -36 REMARK 465 GLN B -35 REMARK 465 ILE B -34 REMARK 465 THR B -33 REMARK 465 ARG B -32 REMARK 465 ARG B -31 REMARK 465 LEU B -30 REMARK 465 GLY B -29 REMARK 465 GLU B -28 REMARK 465 ARG B -27 REMARK 465 VAL B -26 REMARK 465 GLN B -25 REMARK 465 GLY B -24 REMARK 465 PHE B -23 REMARK 465 MET B -22 REMARK 465 SER B -21 REMARK 465 GLY B -20 REMARK 465 ILE B -19 REMARK 465 SER B -18 REMARK 465 PRO B -17 REMARK 465 GLN B -16 REMARK 465 GLN B -15 REMARK 465 MET B -14 REMARK 465 GLY B -13 REMARK 465 GLU B -12 REMARK 465 PRO B -11 REMARK 465 GLU B -10 REMARK 465 GLY B -9 REMARK 465 SER B -8 REMARK 465 TRP B -7 REMARK 465 SER B -6 REMARK 465 GLY B -5 REMARK 465 LYS B -4 REMARK 465 ASN B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 THR B 0 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 ASP B 154 REMARK 465 THR B 155 REMARK 465 VAL B 156 REMARK 465 MET C -40 REMARK 465 TYR C -39 REMARK 465 TRP C -38 REMARK 465 SER C -37 REMARK 465 ASN C -36 REMARK 465 GLN C -35 REMARK 465 ILE C -34 REMARK 465 THR C -33 REMARK 465 ARG C -32 REMARK 465 ARG C -31 REMARK 465 LEU C -30 REMARK 465 GLY C -29 REMARK 465 GLU C -28 REMARK 465 ARG C -27 REMARK 465 VAL C -26 REMARK 465 GLN C -25 REMARK 465 GLY C -24 REMARK 465 PHE C -23 REMARK 465 MET C -22 REMARK 465 SER C -21 REMARK 465 GLY C -20 REMARK 465 ILE C -19 REMARK 465 SER C -18 REMARK 465 PRO C -17 REMARK 465 GLN C -16 REMARK 465 GLN C -15 REMARK 465 MET C -14 REMARK 465 GLY C -13 REMARK 465 GLU C -12 REMARK 465 PRO C -11 REMARK 465 GLU C -10 REMARK 465 GLY C -9 REMARK 465 SER C -8 REMARK 465 TRP C -7 REMARK 465 SER C -6 REMARK 465 GLY C -5 REMARK 465 LYS C -4 REMARK 465 ASN C -3 REMARK 465 PRO C -2 REMARK 465 GLY C -1 REMARK 465 THR C 0 REMARK 465 MET C 1 REMARK 465 MET D -40 REMARK 465 TYR D -39 REMARK 465 TRP D -38 REMARK 465 SER D -37 REMARK 465 ASN D -36 REMARK 465 GLN D -35 REMARK 465 ILE D -34 REMARK 465 THR D -33 REMARK 465 ARG D -32 REMARK 465 ARG D -31 REMARK 465 LEU D -30 REMARK 465 GLY D -29 REMARK 465 GLU D -28 REMARK 465 ARG D -27 REMARK 465 VAL D -26 REMARK 465 GLN D -25 REMARK 465 GLY D -24 REMARK 465 PHE D -23 REMARK 465 MET D -22 REMARK 465 SER D -21 REMARK 465 GLY D -20 REMARK 465 ILE D -19 REMARK 465 SER D -18 REMARK 465 PRO D -17 REMARK 465 GLN D -16 REMARK 465 GLN D -15 REMARK 465 MET D -14 REMARK 465 GLY D -13 REMARK 465 GLU D -12 REMARK 465 PRO D -11 REMARK 465 GLU D -10 REMARK 465 GLY D -9 REMARK 465 SER D -8 REMARK 465 TRP D -7 REMARK 465 SER D -6 REMARK 465 GLY D -5 REMARK 465 LYS D -4 REMARK 465 ASN D -3 REMARK 465 PRO D -2 REMARK 465 GLY D -1 REMARK 465 THR D 0 REMARK 465 MET D 1 REMARK 465 GLY D 2 REMARK 465 THR D 155 REMARK 465 VAL D 156 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 99 CG OD1 OD2 REMARK 470 GLN A 107 CG CD OE1 NE2 REMARK 470 ARG B 25 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 142 CG CD OE1 NE2 REMARK 470 ARG C 25 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 5 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 25 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 66 CG CD CE NZ REMARK 470 LYS D 114 CG CD CE NZ REMARK 470 ASP D 115 CG OD1 OD2 REMARK 470 LEU D 128 CG CD1 CD2 REMARK 470 LYS D 130 CG CD CE NZ REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6MA A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6MA B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6MA C 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6MA D 201 DBREF 6QVO A -40 156 UNP P36639 8ODP_HUMAN 1 197 DBREF 6QVO B -40 156 UNP P36639 8ODP_HUMAN 1 197 DBREF 6QVO C -40 156 UNP P36639 8ODP_HUMAN 1 197 DBREF 6QVO D -40 156 UNP P36639 8ODP_HUMAN 1 197 SEQRES 1 A 197 MET TYR TRP SER ASN GLN ILE THR ARG ARG LEU GLY GLU SEQRES 2 A 197 ARG VAL GLN GLY PHE MET SER GLY ILE SER PRO GLN GLN SEQRES 3 A 197 MET GLY GLU PRO GLU GLY SER TRP SER GLY LYS ASN PRO SEQRES 4 A 197 GLY THR MET GLY ALA SER ARG LEU TYR THR LEU VAL LEU SEQRES 5 A 197 VAL LEU GLN PRO GLN ARG VAL LEU LEU GLY MET LYS LYS SEQRES 6 A 197 ARG GLY PHE GLY ALA GLY ARG TRP ASN GLY PHE GLY GLY SEQRES 7 A 197 LYS VAL GLN GLU GLY GLU THR ILE GLU ASP GLY ALA ARG SEQRES 8 A 197 ARG GLU LEU GLN GLU GLU SER GLY LEU THR VAL ASP ALA SEQRES 9 A 197 LEU HIS LYS VAL GLY GLN ILE VAL PHE GLU PHE VAL GLY SEQRES 10 A 197 GLU PRO GLU LEU MET ASP VAL HIS VAL PHE CYS THR ASP SEQRES 11 A 197 SER ILE GLN GLY THR PRO VAL GLU SER ASP GLU MET ARG SEQRES 12 A 197 PRO CYS TRP PHE GLN LEU ASP GLN ILE PRO PHE LYS ASP SEQRES 13 A 197 MET TRP PRO ASP ASP SER TYR TRP PHE PRO LEU LEU LEU SEQRES 14 A 197 GLN LYS LYS LYS PHE HIS GLY TYR PHE LYS PHE GLN GLY SEQRES 15 A 197 GLN ASP THR ILE LEU ASP TYR THR LEU ARG GLU VAL ASP SEQRES 16 A 197 THR VAL SEQRES 1 B 197 MET TYR TRP SER ASN GLN ILE THR ARG ARG LEU GLY GLU SEQRES 2 B 197 ARG VAL GLN GLY PHE MET SER GLY ILE SER PRO GLN GLN SEQRES 3 B 197 MET GLY GLU PRO GLU GLY SER TRP SER GLY LYS ASN PRO SEQRES 4 B 197 GLY THR MET GLY ALA SER ARG LEU TYR THR LEU VAL LEU SEQRES 5 B 197 VAL LEU GLN PRO GLN ARG VAL LEU LEU GLY MET LYS LYS SEQRES 6 B 197 ARG GLY PHE GLY ALA GLY ARG TRP ASN GLY PHE GLY GLY SEQRES 7 B 197 LYS VAL GLN GLU GLY GLU THR ILE GLU ASP GLY ALA ARG SEQRES 8 B 197 ARG GLU LEU GLN GLU GLU SER GLY LEU THR VAL ASP ALA SEQRES 9 B 197 LEU HIS LYS VAL GLY GLN ILE VAL PHE GLU PHE VAL GLY SEQRES 10 B 197 GLU PRO GLU LEU MET ASP VAL HIS VAL PHE CYS THR ASP SEQRES 11 B 197 SER ILE GLN GLY THR PRO VAL GLU SER ASP GLU MET ARG SEQRES 12 B 197 PRO CYS TRP PHE GLN LEU ASP GLN ILE PRO PHE LYS ASP SEQRES 13 B 197 MET TRP PRO ASP ASP SER TYR TRP PHE PRO LEU LEU LEU SEQRES 14 B 197 GLN LYS LYS LYS PHE HIS GLY TYR PHE LYS PHE GLN GLY SEQRES 15 B 197 GLN ASP THR ILE LEU ASP TYR THR LEU ARG GLU VAL ASP SEQRES 16 B 197 THR VAL SEQRES 1 C 197 MET TYR TRP SER ASN GLN ILE THR ARG ARG LEU GLY GLU SEQRES 2 C 197 ARG VAL GLN GLY PHE MET SER GLY ILE SER PRO GLN GLN SEQRES 3 C 197 MET GLY GLU PRO GLU GLY SER TRP SER GLY LYS ASN PRO SEQRES 4 C 197 GLY THR MET GLY ALA SER ARG LEU TYR THR LEU VAL LEU SEQRES 5 C 197 VAL LEU GLN PRO GLN ARG VAL LEU LEU GLY MET LYS LYS SEQRES 6 C 197 ARG GLY PHE GLY ALA GLY ARG TRP ASN GLY PHE GLY GLY SEQRES 7 C 197 LYS VAL GLN GLU GLY GLU THR ILE GLU ASP GLY ALA ARG SEQRES 8 C 197 ARG GLU LEU GLN GLU GLU SER GLY LEU THR VAL ASP ALA SEQRES 9 C 197 LEU HIS LYS VAL GLY GLN ILE VAL PHE GLU PHE VAL GLY SEQRES 10 C 197 GLU PRO GLU LEU MET ASP VAL HIS VAL PHE CYS THR ASP SEQRES 11 C 197 SER ILE GLN GLY THR PRO VAL GLU SER ASP GLU MET ARG SEQRES 12 C 197 PRO CYS TRP PHE GLN LEU ASP GLN ILE PRO PHE LYS ASP SEQRES 13 C 197 MET TRP PRO ASP ASP SER TYR TRP PHE PRO LEU LEU LEU SEQRES 14 C 197 GLN LYS LYS LYS PHE HIS GLY TYR PHE LYS PHE GLN GLY SEQRES 15 C 197 GLN ASP THR ILE LEU ASP TYR THR LEU ARG GLU VAL ASP SEQRES 16 C 197 THR VAL SEQRES 1 D 197 MET TYR TRP SER ASN GLN ILE THR ARG ARG LEU GLY GLU SEQRES 2 D 197 ARG VAL GLN GLY PHE MET SER GLY ILE SER PRO GLN GLN SEQRES 3 D 197 MET GLY GLU PRO GLU GLY SER TRP SER GLY LYS ASN PRO SEQRES 4 D 197 GLY THR MET GLY ALA SER ARG LEU TYR THR LEU VAL LEU SEQRES 5 D 197 VAL LEU GLN PRO GLN ARG VAL LEU LEU GLY MET LYS LYS SEQRES 6 D 197 ARG GLY PHE GLY ALA GLY ARG TRP ASN GLY PHE GLY GLY SEQRES 7 D 197 LYS VAL GLN GLU GLY GLU THR ILE GLU ASP GLY ALA ARG SEQRES 8 D 197 ARG GLU LEU GLN GLU GLU SER GLY LEU THR VAL ASP ALA SEQRES 9 D 197 LEU HIS LYS VAL GLY GLN ILE VAL PHE GLU PHE VAL GLY SEQRES 10 D 197 GLU PRO GLU LEU MET ASP VAL HIS VAL PHE CYS THR ASP SEQRES 11 D 197 SER ILE GLN GLY THR PRO VAL GLU SER ASP GLU MET ARG SEQRES 12 D 197 PRO CYS TRP PHE GLN LEU ASP GLN ILE PRO PHE LYS ASP SEQRES 13 D 197 MET TRP PRO ASP ASP SER TYR TRP PHE PRO LEU LEU LEU SEQRES 14 D 197 GLN LYS LYS LYS PHE HIS GLY TYR PHE LYS PHE GLN GLY SEQRES 15 D 197 GLN ASP THR ILE LEU ASP TYR THR LEU ARG GLU VAL ASP SEQRES 16 D 197 THR VAL HET SO4 A 201 5 HET SO4 A 202 5 HET SO4 A 203 5 HET 6MA A 204 23 HET SO4 B 201 5 HET 6MA B 202 23 HET GOL B 203 6 HET SO4 C 201 5 HET SO4 C 202 5 HET 6MA C 203 23 HET 6MA D 201 23 HETNAM SO4 SULFATE ION HETNAM 6MA N6-METHYL-DEOXY-ADENOSINE-5'-MONOPHOSPHATE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 SO4 6(O4 S 2-) FORMUL 8 6MA 4(C11 H16 N5 O6 P) FORMUL 11 GOL C3 H8 O3 FORMUL 16 HOH *87(H2 O) HELIX 1 AA1 THR A 44 GLY A 58 1 15 HELIX 2 AA2 PRO A 112 MET A 116 5 5 HELIX 3 AA3 TRP A 117 PRO A 118 5 2 HELIX 4 AA4 ASP A 119 GLN A 129 1 11 HELIX 5 AA5 THR B 44 GLY B 58 1 15 HELIX 6 AA6 PRO B 112 MET B 116 5 5 HELIX 7 AA7 TRP B 117 PRO B 118 5 2 HELIX 8 AA8 ASP B 119 GLN B 129 1 11 HELIX 9 AA9 THR C 44 GLY C 58 1 15 HELIX 10 AB1 PRO C 112 MET C 116 5 5 HELIX 11 AB2 TRP C 117 PRO C 118 5 2 HELIX 12 AB3 ASP C 119 GLN C 129 1 11 HELIX 13 AB4 THR D 44 GLY D 58 1 15 HELIX 14 AB5 PRO D 112 MET D 116 5 5 HELIX 15 AB6 TRP D 117 PRO D 118 5 2 HELIX 16 AB7 ASP D 119 GLN D 129 1 11 SHEET 1 A 6 PHE A 35 LYS A 38 0 SHEET 2 A 6 SER A 4 VAL A 12 -1 N VAL A 10 O PHE A 35 SHEET 3 A 6 LEU A 80 THR A 88 1 N LEU A 80 O ARG A 5 SHEET 4 A 6 HIS A 65 PHE A 74 -1 N PHE A 72 O MET A 81 SHEET 5 A 6 PHE A 133 GLN A 140 1 N PHE A 133 O GLN A 69 SHEET 6 A 6 THR A 144 GLU A 152 -1 N ARG A 151 O HIS A 134 SHEET 1 B 3 VAL A 12 GLN A 14 0 SHEET 2 B 3 ARG A 17 LYS A 23 -1 N LEU A 19 O VAL A 12 SHEET 3 B 3 MET A 101 GLN A 107 -1 N PHE A 106 O VAL A 18 SHEET 1 C 6 PHE B 35 LYS B 38 0 SHEET 2 C 6 SER B 4 VAL B 12 -1 N VAL B 10 O PHE B 35 SHEET 3 C 6 LEU B 80 THR B 88 1 N LEU B 80 O ARG B 5 SHEET 4 C 6 HIS B 65 PHE B 74 -1 N PHE B 72 O MET B 81 SHEET 5 C 6 PHE B 133 GLN B 140 1 N PHE B 133 O GLN B 69 SHEET 6 C 6 THR B 144 GLU B 152 -1 N ARG B 151 O HIS B 134 SHEET 1 D 3 VAL B 12 GLN B 14 0 SHEET 2 D 3 ARG B 17 LYS B 23 -1 N LEU B 19 O VAL B 12 SHEET 3 D 3 MET B 101 GLN B 107 -1 N PHE B 106 O VAL B 18 SHEET 1 E 6 PHE C 35 LYS C 38 0 SHEET 2 E 6 SER C 4 VAL C 12 -1 N VAL C 10 O PHE C 35 SHEET 3 E 6 LEU C 80 THR C 88 1 N LEU C 80 O ARG C 5 SHEET 4 E 6 HIS C 65 PHE C 74 -1 N PHE C 72 O MET C 81 SHEET 5 E 6 LYS C 132 GLN C 140 1 N PHE C 133 O GLN C 69 SHEET 6 E 6 THR C 144 VAL C 153 -1 N VAL C 153 O LYS C 132 SHEET 1 F 3 VAL C 12 GLN C 14 0 SHEET 2 F 3 ARG C 17 LYS C 23 -1 N LEU C 19 O VAL C 12 SHEET 3 F 3 MET C 101 GLN C 107 -1 N PHE C 106 O VAL C 18 SHEET 1 G 6 PHE D 35 LYS D 38 0 SHEET 2 G 6 SER D 4 VAL D 12 -1 N VAL D 10 O PHE D 35 SHEET 3 G 6 LEU D 80 THR D 88 1 N LEU D 80 O ARG D 5 SHEET 4 G 6 HIS D 65 PHE D 74 -1 N PHE D 72 O MET D 81 SHEET 5 G 6 PHE D 133 GLN D 140 1 N PHE D 133 O GLN D 69 SHEET 6 G 6 THR D 144 GLU D 152 -1 N ARG D 151 O HIS D 134 SHEET 1 H 3 VAL D 12 GLN D 14 0 SHEET 2 H 3 ARG D 17 LYS D 23 -1 N LEU D 19 O VAL D 12 SHEET 3 H 3 MET D 101 GLN D 107 -1 N PHE D 106 O VAL D 18 SITE 1 AC1 5 ALA A 63 HIS A 65 THR A 88 ASP A 89 SITE 2 AC1 5 SER A 90 SITE 1 AC2 4 TYR A 136 ASP A 147 LYS B 24 GLU B 97 SITE 1 AC3 3 LEU A 64 HIS A 65 LYS A 66 SITE 1 AC4 14 THR A 8 LEU A 9 LYS A 23 ASN A 33 SITE 2 AC4 14 GLY A 36 GLY A 37 PHE A 72 PHE A 74 SITE 3 AC4 14 MET A 81 TRP A 117 ASP A 119 ASP A 120 SITE 4 AC4 14 HOH A 311 HOH A 314 SITE 1 AC5 4 HIS B 65 THR B 88 ASP B 89 SER B 90 SITE 1 AC6 12 THR B 8 LEU B 9 LYS B 23 PHE B 27 SITE 2 AC6 12 ASN B 33 GLY B 36 GLY B 37 PHE B 72 SITE 3 AC6 12 TRP B 117 ASP B 119 ASP B 120 HOH B 305 SITE 1 AC7 2 TYR B 148 ARG C 151 SITE 1 AC8 5 LEU C 64 HIS C 65 LYS C 66 GLY C 76 SITE 2 AC8 5 PRO C 78 SITE 1 AC9 7 ALA C 63 HIS C 65 GLU C 77 THR C 88 SITE 2 AC9 7 ASP C 89 SER C 90 HOH C 304 SITE 1 AD1 19 TYR C 7 THR C 8 LYS C 23 PHE C 27 SITE 2 AD1 19 ASN C 33 GLY C 36 GLY C 37 LYS C 38 SITE 3 AD1 19 PHE C 72 PHE C 74 MET C 81 GLU C 100 SITE 4 AD1 19 TRP C 117 ASP C 119 ASP C 120 PHE C 139 SITE 5 AD1 19 HOH C 302 HOH C 309 HOH C 316 SITE 1 AD2 13 TYR D 7 THR D 8 LEU D 9 PHE D 27 SITE 2 AD2 13 ASN D 33 GLY D 36 GLY D 37 PHE D 72 SITE 3 AD2 13 PHE D 74 MET D 81 TRP D 117 ASP D 119 SITE 4 AD2 13 ASP D 120 CRYST1 35.478 67.111 117.678 90.00 94.74 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028186 0.000000 0.002335 0.00000 SCALE2 0.000000 0.014901 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008527 0.00000