HEADER MEMBRANE PROTEIN 04-MAR-19 6QVP TITLE CRYSTAL STRUCTURE OF THE PEPTIDOGLYCAN-BINDING DOMAIN OF SIIA FROM TITLE 2 SALMONELLA ENTERICA COMPND MOL_ID: 1; COMPND 2 MOLECULE: INNER MEMBRANE PROTEIN; COMPND 3 CHAIN: A, E, C, D, B, F; COMPND 4 SYNONYM: MEMBRANE PROTEIN,PUTATIVE INNER MEMBRANE OR EXPORTED COMPND 5 PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM; SOURCE 3 ORGANISM_TAXID: 90371; SOURCE 4 GENE: SIIA, DD95_13055, EIL76_22260; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OMPA-LIKE DOMAIN, PEPTIDOGLYCAN BINDING, PERIPLASMIC, SALMONELLA, KEYWDS 2 T1SS, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.KIRCHWEGER,Y.A.MULLER REVDAT 2 20-NOV-19 6QVP 1 JRNL REVDAT 1 28-AUG-19 6QVP 0 JRNL AUTH P.KIRCHWEGER,S.WEILER,C.EGERER-SIEBER,A.T.BLASL,S.HOFFMANN, JRNL AUTH 2 C.SCHMIDT,N.SANDER,D.MERKER,R.G.GERLACH,M.HENSEL,Y.A.MULLER JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF SIIA, AN JRNL TITL 2 AUXILIARY PROTEIN FROM THE SPI4-ENCODED TYPE 1 SECRETION JRNL TITL 3 SYSTEM FROM SALMONELLA ENTERICA. JRNL REF MOL.MICROBIOL. V. 112 1403 2019 JRNL REFN ESSN 1365-2958 JRNL PMID 31419359 JRNL DOI 10.1111/MMI.14368 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 57795 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2892 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9655 - 5.2071 0.97 2614 137 0.1916 0.2632 REMARK 3 2 5.2071 - 4.1451 0.99 2628 138 0.1458 0.1975 REMARK 3 3 4.1451 - 3.6247 0.98 2647 142 0.1513 0.2291 REMARK 3 4 3.6247 - 3.2949 0.98 2649 139 0.1537 0.2260 REMARK 3 5 3.2949 - 3.0596 0.98 2630 140 0.1659 0.2308 REMARK 3 6 3.0596 - 2.8798 0.98 2675 141 0.1705 0.2079 REMARK 3 7 2.8798 - 2.7360 0.98 2593 136 0.1729 0.2156 REMARK 3 8 2.7360 - 2.6171 0.98 2637 139 0.1731 0.2461 REMARK 3 9 2.6171 - 2.5166 0.98 2636 136 0.1701 0.2408 REMARK 3 10 2.5166 - 2.4299 0.98 2594 136 0.1699 0.2534 REMARK 3 11 2.4299 - 2.3540 0.98 2644 140 0.1755 0.2261 REMARK 3 12 2.3540 - 2.2869 0.97 2638 139 0.2075 0.2698 REMARK 3 13 2.2869 - 2.2267 0.97 2571 135 0.2620 0.3436 REMARK 3 14 2.2267 - 2.1725 0.97 2605 138 0.2352 0.2868 REMARK 3 15 2.1725 - 2.1231 0.98 2616 138 0.2000 0.2622 REMARK 3 16 2.1231 - 2.0780 0.97 2626 138 0.2136 0.2651 REMARK 3 17 2.0780 - 2.0365 0.97 2591 136 0.2108 0.2588 REMARK 3 18 2.0365 - 1.9981 0.98 2605 137 0.2146 0.2780 REMARK 3 19 1.9981 - 1.9624 0.96 2593 137 0.2289 0.2912 REMARK 3 20 1.9624 - 1.9292 0.97 2596 137 0.2949 0.3040 REMARK 3 21 1.9292 - 1.8981 0.92 2515 133 0.3474 0.3419 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.81 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 4942 REMARK 3 ANGLE : 1.110 6670 REMARK 3 CHIRALITY : 0.067 817 REMARK 3 PLANARITY : 0.007 806 REMARK 3 DIHEDRAL : 12.457 3094 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 103 THROUGH 204) REMARK 3 ORIGIN FOR THE GROUP (A): -28.7143 50.3097 31.1979 REMARK 3 T TENSOR REMARK 3 T11: 0.1588 T22: 0.1217 REMARK 3 T33: 0.1075 T12: 0.0586 REMARK 3 T13: -0.0113 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 2.0514 L22: 2.1974 REMARK 3 L33: 3.0684 L12: -0.6722 REMARK 3 L13: -0.4799 L23: -0.0285 REMARK 3 S TENSOR REMARK 3 S11: 0.0510 S12: 0.0705 S13: 0.0595 REMARK 3 S21: -0.1300 S22: -0.0233 S23: 0.2021 REMARK 3 S31: -0.3542 S32: -0.3208 S33: -0.0026 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 103 THROUGH 204) REMARK 3 ORIGIN FOR THE GROUP (A): -18.1494 37.3967 8.3652 REMARK 3 T TENSOR REMARK 3 T11: 0.2480 T22: 0.1187 REMARK 3 T33: 0.1173 T12: 0.0051 REMARK 3 T13: 0.0238 T23: -0.0039 REMARK 3 L TENSOR REMARK 3 L11: 1.5966 L22: 2.0568 REMARK 3 L33: 3.0871 L12: 0.5932 REMARK 3 L13: 0.1041 L23: -0.2418 REMARK 3 S TENSOR REMARK 3 S11: -0.0686 S12: 0.1031 S13: -0.2533 REMARK 3 S21: -0.1195 S22: 0.1356 S23: 0.0307 REMARK 3 S31: 0.6463 S32: 0.0593 S33: -0.0318 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 103 THROUGH 203) REMARK 3 ORIGIN FOR THE GROUP (A): -12.3068 47.4420 54.2858 REMARK 3 T TENSOR REMARK 3 T11: 0.0583 T22: 0.3124 REMARK 3 T33: 0.1417 T12: -0.0291 REMARK 3 T13: 0.0203 T23: 0.0705 REMARK 3 L TENSOR REMARK 3 L11: 2.1166 L22: 1.5636 REMARK 3 L33: 1.9980 L12: -0.3753 REMARK 3 L13: 0.2743 L23: -0.2208 REMARK 3 S TENSOR REMARK 3 S11: 0.1336 S12: 0.1660 S13: 0.2202 REMARK 3 S21: -0.0024 S22: -0.2016 S23: -0.2514 REMARK 3 S31: 0.0191 S32: 0.6729 S33: -0.0391 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 103 THROUGH 206) REMARK 3 ORIGIN FOR THE GROUP (A): -37.2113 48.0231 52.5794 REMARK 3 T TENSOR REMARK 3 T11: 0.0781 T22: 0.3153 REMARK 3 T33: 0.1338 T12: 0.0238 REMARK 3 T13: 0.0184 T23: -0.0133 REMARK 3 L TENSOR REMARK 3 L11: 2.9558 L22: 1.7704 REMARK 3 L33: 3.0043 L12: -0.4737 REMARK 3 L13: -0.1979 L23: -0.4401 REMARK 3 S TENSOR REMARK 3 S11: -0.0073 S12: -0.1309 S13: 0.0556 REMARK 3 S21: 0.0491 S22: -0.0007 S23: 0.2484 REMARK 3 S31: -0.1444 S32: -0.7729 S33: -0.0016 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN 'E' AND RESID 103 THROUGH 206) REMARK 3 ORIGIN FOR THE GROUP (A): -16.1066 28.3539 29.5599 REMARK 3 T TENSOR REMARK 3 T11: 0.4679 T22: 0.1489 REMARK 3 T33: 0.2039 T12: 0.1887 REMARK 3 T13: 0.0437 T23: 0.0293 REMARK 3 L TENSOR REMARK 3 L11: 1.4510 L22: 3.0478 REMARK 3 L33: 2.3305 L12: -0.5311 REMARK 3 L13: -0.1015 L23: -0.0677 REMARK 3 S TENSOR REMARK 3 S11: -0.1234 S12: -0.0841 S13: -0.3984 REMARK 3 S21: -0.0334 S22: 0.0307 S23: -0.1341 REMARK 3 S31: 0.8930 S32: 0.4013 S33: -0.0496 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN 'F' AND RESID 103 THROUGH 206) REMARK 3 ORIGIN FOR THE GROUP (A): -5.7884 59.1350 11.7507 REMARK 3 T TENSOR REMARK 3 T11: 0.2540 T22: 0.3739 REMARK 3 T33: 0.2000 T12: -0.1491 REMARK 3 T13: -0.0497 T23: -0.0101 REMARK 3 L TENSOR REMARK 3 L11: 2.5426 L22: 1.8223 REMARK 3 L33: 2.6237 L12: 0.2349 REMARK 3 L13: -0.1613 L23: -0.3208 REMARK 3 S TENSOR REMARK 3 S11: -0.0117 S12: -0.2402 S13: 0.3080 REMARK 3 S21: 0.2856 S22: -0.1211 S23: -0.3242 REMARK 3 S31: -0.5725 S32: 0.7218 S33: -0.0407 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QVP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1292100844. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57795 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 42.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : 1.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM PHOSPHATE DIBASIC REMARK 280 DIHYDRATE, 20% W/V POLYETHYLENE GLYCOL 3,350, PH 9.1, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 205 REMARK 465 LYS A 206 REMARK 465 ILE C 204 REMARK 465 ASN C 205 REMARK 465 LYS C 206 REMARK 465 ASP D 154 REMARK 465 ILE D 155 REMARK 465 ASP B 154 REMARK 465 ILE B 155 REMARK 465 SER B 156 REMARK 465 PHE B 157 REMARK 465 ASP F 154 REMARK 465 ILE F 155 REMARK 465 SER F 156 REMARK 465 PHE F 157 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR B 130 O HOH B 301 1.49 REMARK 500 HD22 ASN E 143 O HOH E 302 1.49 REMARK 500 O LYS C 110 HZ1 LYS C 139 1.55 REMARK 500 H ASP A 138 O HOH A 405 1.57 REMARK 500 HH TYR D 130 O HOH D 304 1.59 REMARK 500 HG SER E 194 O HOH E 305 1.60 REMARK 500 O HOH A 525 O HOH A 527 1.96 REMARK 500 O HOH D 394 O HOH D 401 2.01 REMARK 500 O HOH A 422 O HOH A 489 2.02 REMARK 500 O HOH D 378 O HOH D 387 2.04 REMARK 500 O HOH C 476 O HOH C 477 2.07 REMARK 500 O HOH A 405 O HOH A 489 2.08 REMARK 500 O ILE E 140 OH TYR E 179 2.10 REMARK 500 O HOH C 492 O HOH C 522 2.12 REMARK 500 O1 PO4 A 302 O HOH A 401 2.12 REMARK 500 O HOH B 357 O HOH B 379 2.13 REMARK 500 O HOH A 422 O HOH A 507 2.17 REMARK 500 O HOH C 442 O HOH C 501 2.18 REMARK 500 O HOH C 462 O HOH C 509 2.19 REMARK 500 O HOH B 378 O HOH B 384 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH E 333 O HOH C 496 1554 2.17 REMARK 500 O HOH C 429 O HOH D 381 1655 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU C 166 CG GLU C 166 CD 0.090 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 141 34.76 -93.92 REMARK 500 SER A 156 46.49 -92.99 REMARK 500 SER E 156 47.37 -91.85 REMARK 500 SER E 156 48.98 -92.80 REMARK 500 ASN E 205 -73.28 -70.94 REMARK 500 SER C 123 -169.10 -124.35 REMARK 500 ASN C 141 44.40 -97.52 REMARK 500 SER C 156 38.38 -84.98 REMARK 500 TYR C 179 75.12 -152.16 REMARK 500 SER D 193 99.84 -161.38 REMARK 500 SER D 194 -49.62 -132.33 REMARK 500 THR D 195 -4.26 71.25 REMARK 500 SER B 193 102.35 -174.48 REMARK 500 THR B 195 5.47 59.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH E 430 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH E 431 DISTANCE = 6.82 ANGSTROMS REMARK 525 HOH E 432 DISTANCE = 7.28 ANGSTROMS REMARK 525 HOH D 403 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH B 387 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH F 371 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH F 372 DISTANCE = 6.61 ANGSTROMS REMARK 525 HOH F 373 DISTANCE = 7.13 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 C 301 DBREF 6QVP A 103 206 UNP H9L4G5 H9L4G5_SALTM 103 206 DBREF 6QVP E 103 206 UNP H9L4G5 H9L4G5_SALTM 103 206 DBREF 6QVP C 103 206 UNP H9L4G5 H9L4G5_SALTM 103 206 DBREF 6QVP D 103 206 UNP H9L4G5 H9L4G5_SALTM 103 206 DBREF 6QVP B 103 206 UNP H9L4G5 H9L4G5_SALTM 103 206 DBREF 6QVP F 103 206 UNP H9L4G5 H9L4G5_SALTM 103 206 SEQRES 1 A 104 LYS THR ASP ILE THR SER THR LYS ASN GLU LEU VAL ILE SEQRES 2 A 104 THR TYR HIS GLY ARG LEU ARG SER PHE SER GLU GLU ASP SEQRES 3 A 104 THR TYR LYS ILE LYS ALA TRP LEU GLU ASP LYS ILE ASN SEQRES 4 A 104 SER ASN LEU LEU ILE GLU MSE VAL ILE PRO GLN ALA ASP SEQRES 5 A 104 ILE SER PHE SER ASP SER LEU ARG LEU GLY TYR GLU ARG SEQRES 6 A 104 GLY ILE ILE LEU MSE LYS GLU ILE LYS LYS ILE TYR PRO SEQRES 7 A 104 ASP VAL VAL ILE ASP MSE SER VAL ASN SER ALA ALA SER SEQRES 8 A 104 SER THR THR SER LYS ALA ILE ILE THR THR ILE ASN LYS SEQRES 1 E 104 LYS THR ASP ILE THR SER THR LYS ASN GLU LEU VAL ILE SEQRES 2 E 104 THR TYR HIS GLY ARG LEU ARG SER PHE SER GLU GLU ASP SEQRES 3 E 104 THR TYR LYS ILE LYS ALA TRP LEU GLU ASP LYS ILE ASN SEQRES 4 E 104 SER ASN LEU LEU ILE GLU MSE VAL ILE PRO GLN ALA ASP SEQRES 5 E 104 ILE SER PHE SER ASP SER LEU ARG LEU GLY TYR GLU ARG SEQRES 6 E 104 GLY ILE ILE LEU MSE LYS GLU ILE LYS LYS ILE TYR PRO SEQRES 7 E 104 ASP VAL VAL ILE ASP MSE SER VAL ASN SER ALA ALA SER SEQRES 8 E 104 SER THR THR SER LYS ALA ILE ILE THR THR ILE ASN LYS SEQRES 1 C 104 LYS THR ASP ILE THR SER THR LYS ASN GLU LEU VAL ILE SEQRES 2 C 104 THR TYR HIS GLY ARG LEU ARG SER PHE SER GLU GLU ASP SEQRES 3 C 104 THR TYR LYS ILE LYS ALA TRP LEU GLU ASP LYS ILE ASN SEQRES 4 C 104 SER ASN LEU LEU ILE GLU MSE VAL ILE PRO GLN ALA ASP SEQRES 5 C 104 ILE SER PHE SER ASP SER LEU ARG LEU GLY TYR GLU ARG SEQRES 6 C 104 GLY ILE ILE LEU MSE LYS GLU ILE LYS LYS ILE TYR PRO SEQRES 7 C 104 ASP VAL VAL ILE ASP MSE SER VAL ASN SER ALA ALA SER SEQRES 8 C 104 SER THR THR SER LYS ALA ILE ILE THR THR ILE ASN LYS SEQRES 1 D 104 LYS THR ASP ILE THR SER THR LYS ASN GLU LEU VAL ILE SEQRES 2 D 104 THR TYR HIS GLY ARG LEU ARG SER PHE SER GLU GLU ASP SEQRES 3 D 104 THR TYR LYS ILE LYS ALA TRP LEU GLU ASP LYS ILE ASN SEQRES 4 D 104 SER ASN LEU LEU ILE GLU MSE VAL ILE PRO GLN ALA ASP SEQRES 5 D 104 ILE SER PHE SER ASP SER LEU ARG LEU GLY TYR GLU ARG SEQRES 6 D 104 GLY ILE ILE LEU MSE LYS GLU ILE LYS LYS ILE TYR PRO SEQRES 7 D 104 ASP VAL VAL ILE ASP MSE SER VAL ASN SER ALA ALA SER SEQRES 8 D 104 SER THR THR SER LYS ALA ILE ILE THR THR ILE ASN LYS SEQRES 1 B 104 LYS THR ASP ILE THR SER THR LYS ASN GLU LEU VAL ILE SEQRES 2 B 104 THR TYR HIS GLY ARG LEU ARG SER PHE SER GLU GLU ASP SEQRES 3 B 104 THR TYR LYS ILE LYS ALA TRP LEU GLU ASP LYS ILE ASN SEQRES 4 B 104 SER ASN LEU LEU ILE GLU MSE VAL ILE PRO GLN ALA ASP SEQRES 5 B 104 ILE SER PHE SER ASP SER LEU ARG LEU GLY TYR GLU ARG SEQRES 6 B 104 GLY ILE ILE LEU MSE LYS GLU ILE LYS LYS ILE TYR PRO SEQRES 7 B 104 ASP VAL VAL ILE ASP MSE SER VAL ASN SER ALA ALA SER SEQRES 8 B 104 SER THR THR SER LYS ALA ILE ILE THR THR ILE ASN LYS SEQRES 1 F 104 LYS THR ASP ILE THR SER THR LYS ASN GLU LEU VAL ILE SEQRES 2 F 104 THR TYR HIS GLY ARG LEU ARG SER PHE SER GLU GLU ASP SEQRES 3 F 104 THR TYR LYS ILE LYS ALA TRP LEU GLU ASP LYS ILE ASN SEQRES 4 F 104 SER ASN LEU LEU ILE GLU MSE VAL ILE PRO GLN ALA ASP SEQRES 5 F 104 ILE SER PHE SER ASP SER LEU ARG LEU GLY TYR GLU ARG SEQRES 6 F 104 GLY ILE ILE LEU MSE LYS GLU ILE LYS LYS ILE TYR PRO SEQRES 7 F 104 ASP VAL VAL ILE ASP MSE SER VAL ASN SER ALA ALA SER SEQRES 8 F 104 SER THR THR SER LYS ALA ILE ILE THR THR ILE ASN LYS MODRES 6QVP MSE A 148 MET MODIFIED RESIDUE MODRES 6QVP MSE A 172 MET MODIFIED RESIDUE MODRES 6QVP MSE A 186 MET MODIFIED RESIDUE MODRES 6QVP MSE E 148 MET MODIFIED RESIDUE MODRES 6QVP MSE E 172 MET MODIFIED RESIDUE MODRES 6QVP MSE E 186 MET MODIFIED RESIDUE MODRES 6QVP MSE C 148 MET MODIFIED RESIDUE MODRES 6QVP MSE C 172 MET MODIFIED RESIDUE MODRES 6QVP MSE C 186 MET MODIFIED RESIDUE MODRES 6QVP MSE D 148 MET MODIFIED RESIDUE MODRES 6QVP MSE D 172 MET MODIFIED RESIDUE MODRES 6QVP MSE D 186 MET MODIFIED RESIDUE MODRES 6QVP MSE B 148 MET MODIFIED RESIDUE MODRES 6QVP MSE B 172 MET MODIFIED RESIDUE MODRES 6QVP MSE B 186 MET MODIFIED RESIDUE MODRES 6QVP MSE F 148 MET MODIFIED RESIDUE MODRES 6QVP MSE F 172 MET MODIFIED RESIDUE MODRES 6QVP MSE F 186 MET MODIFIED RESIDUE HET MSE A 148 17 HET MSE A 172 17 HET MSE A 186 31 HET MSE E 148 31 HET MSE E 172 17 HET MSE E 186 31 HET MSE C 148 31 HET MSE C 172 17 HET MSE C 186 31 HET MSE D 148 31 HET MSE D 172 17 HET MSE D 186 17 HET MSE B 148 31 HET MSE B 172 17 HET MSE B 186 17 HET MSE F 148 17 HET MSE F 172 17 HET MSE F 186 17 HET PO4 A 301 5 HET PO4 A 302 5 HET PO4 C 301 5 HETNAM MSE SELENOMETHIONINE HETNAM PO4 PHOSPHATE ION FORMUL 1 MSE 18(C5 H11 N O2 SE) FORMUL 7 PO4 3(O4 P 3-) FORMUL 10 HOH *645(H2 O) HELIX 1 AA1 SER A 125 GLU A 137 1 13 HELIX 2 AA2 SER A 156 TYR A 179 1 24 HELIX 3 AA3 SER E 125 LEU E 136 1 12 HELIX 4 AA4 GLU E 137 ILE E 140 5 4 HELIX 5 AA5 SER E 156 TYR E 179 1 24 HELIX 6 AA6 SER C 125 GLU C 137 1 13 HELIX 7 AA7 ASP C 138 ILE C 140 5 3 HELIX 8 AA8 SER C 156 TYR C 179 1 24 HELIX 9 AA9 SER D 125 GLU D 137 1 13 HELIX 10 AB1 PHE D 157 TYR D 179 1 23 HELIX 11 AB2 SER B 125 GLU B 137 1 13 HELIX 12 AB3 ASP B 159 TYR B 179 1 21 HELIX 13 AB4 SER F 125 GLU F 137 1 13 HELIX 14 AB5 ASP F 159 TYR F 179 1 21 SHEET 1 AA110 ASP A 105 THR A 109 0 SHEET 2 AA110 GLU A 112 THR A 116 -1 O THR A 116 N ASP A 105 SHEET 3 AA110 LYS A 198 THR A 203 -1 O ILE A 201 N LEU A 113 SHEET 4 AA110 LEU A 144 VAL A 149 -1 N VAL A 149 O LYS A 198 SHEET 5 AA110 ILE A 184 SER A 190 1 O ASP A 185 N ILE A 146 SHEET 6 AA110 ILE B 184 SER B 190 -1 O MSE B 186 N SER A 190 SHEET 7 AA110 SER B 142 ILE B 150 1 N ILE B 146 O ASP B 185 SHEET 8 AA110 SER B 197 ASN B 205 -1 O ILE B 204 N ASN B 143 SHEET 9 AA110 GLU B 112 TYR B 117 -1 N ILE B 115 O ALA B 199 SHEET 10 AA110 ASP B 105 THR B 109 -1 N THR B 107 O VAL B 114 SHEET 1 AA210 ASP E 105 SER E 108 0 SHEET 2 AA210 GLU E 112 THR E 116 -1 O VAL E 114 N THR E 107 SHEET 3 AA210 LYS E 198 THR E 203 -1 O ILE E 201 N LEU E 113 SHEET 4 AA210 LEU E 144 VAL E 149 -1 N LEU E 145 O THR E 202 SHEET 5 AA210 ILE E 184 SER E 190 1 O ASP E 185 N LEU E 144 SHEET 6 AA210 ILE F 184 SER F 190 -1 O MSE F 186 N SER E 190 SHEET 7 AA210 SER F 142 ILE F 150 1 N MSE F 148 O SER F 187 SHEET 8 AA210 SER F 197 ASN F 205 -1 O THR F 202 N LEU F 145 SHEET 9 AA210 GLU F 112 TYR F 117 -1 N LEU F 113 O ILE F 201 SHEET 10 AA210 ASP F 105 SER F 108 -1 N THR F 107 O VAL F 114 SHEET 1 AA310 ASP C 105 SER C 108 0 SHEET 2 AA310 GLU C 112 THR C 116 -1 O VAL C 114 N THR C 107 SHEET 3 AA310 LYS C 198 THR C 202 -1 O ILE C 201 N LEU C 113 SHEET 4 AA310 LEU C 144 VAL C 149 -1 N VAL C 149 O LYS C 198 SHEET 5 AA310 ILE C 184 SER C 190 1 O SER C 187 N MSE C 148 SHEET 6 AA310 ILE D 184 SER D 190 -1 O MSE D 186 N SER C 190 SHEET 7 AA310 SER D 142 ILE D 150 1 N ILE D 146 O ASP D 185 SHEET 8 AA310 SER D 197 ASN D 205 -1 O ILE D 204 N ASN D 143 SHEET 9 AA310 GLU D 112 TYR D 117 -1 N LEU D 113 O ILE D 201 SHEET 10 AA310 ASP D 105 THR D 109 -1 N THR D 107 O VAL D 114 LINK C GLU A 147 N MSE A 148 1555 1555 1.31 LINK C MSE A 148 N VAL A 149 1555 1555 1.33 LINK C LEU A 171 N MSE A 172 1555 1555 1.32 LINK C MSE A 172 N LYS A 173 1555 1555 1.35 LINK C ASP A 185 N MSE A 186 1555 1555 1.32 LINK C MSE A 186 N SER A 187 1555 1555 1.32 LINK C GLU E 147 N MSE E 148 1555 1555 1.32 LINK C MSE E 148 N VAL E 149 1555 1555 1.34 LINK C LEU E 171 N MSE E 172 1555 1555 1.33 LINK C MSE E 172 N LYS E 173 1555 1555 1.34 LINK C ASP E 185 N MSE E 186 1555 1555 1.33 LINK C MSE E 186 N SER E 187 1555 1555 1.33 LINK C GLU C 147 N MSE C 148 1555 1555 1.32 LINK C MSE C 148 N VAL C 149 1555 1555 1.33 LINK C LEU C 171 N MSE C 172 1555 1555 1.33 LINK C MSE C 172 N LYS C 173 1555 1555 1.34 LINK C ASP C 185 N MSE C 186 1555 1555 1.33 LINK C MSE C 186 N SER C 187 1555 1555 1.34 LINK C GLU D 147 N MSE D 148 1555 1555 1.33 LINK C MSE D 148 N VAL D 149 1555 1555 1.32 LINK C LEU D 171 N MSE D 172 1555 1555 1.33 LINK C MSE D 172 N LYS D 173 1555 1555 1.33 LINK C ASP D 185 N MSE D 186 1555 1555 1.33 LINK C MSE D 186 N SER D 187 1555 1555 1.34 LINK C GLU B 147 N MSE B 148 1555 1555 1.30 LINK C MSE B 148 N VAL B 149 1555 1555 1.32 LINK C LEU B 171 N MSE B 172 1555 1555 1.33 LINK C MSE B 172 N LYS B 173 1555 1555 1.32 LINK C ASP B 185 N MSE B 186 1555 1555 1.32 LINK C MSE B 186 N SER B 187 1555 1555 1.33 LINK C GLU F 147 N MSE F 148 1555 1555 1.34 LINK C MSE F 148 N VAL F 149 1555 1555 1.32 LINK C LEU F 171 N MSE F 172 1555 1555 1.33 LINK C MSE F 172 N LYS F 173 1555 1555 1.34 LINK C ASP F 185 N MSE F 186 1555 1555 1.35 LINK C MSE F 186 N SER F 187 1555 1555 1.33 SITE 1 AC1 8 SER A 193 THR A 195 HOH A 440 HOH A 455 SITE 2 AC1 8 LYS F 173 SER E 158 ARG E 162 HOH E 311 SITE 1 AC2 8 SER A 158 ARG A 162 HOH A 401 HOH A 414 SITE 2 AC2 8 SER C 193 THR C 195 HOH C 423 HOH C 441 SITE 1 AC3 9 SER C 158 ARG C 162 HOH C 408 HOH C 409 SITE 2 AC3 9 HOH C 413 HOH C 468 SER E 193 THR E 195 SITE 3 AC3 9 HOH E 342 CRYST1 58.334 58.360 65.828 93.88 94.00 119.00 P 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017143 0.009504 0.002320 0.00000 SCALE2 0.000000 0.019592 0.002294 0.00000 SCALE3 0.000000 0.000000 0.015332 0.00000