HEADER HYDROLASE 05-MAR-19 6QW0 TITLE STRUCTURE AND FUNCTION OF TOSCANA VIRUS CAP SNATCHING ENDONUCLEASES COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-DEPENDENT RNA POLYMERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TOSCANA VIRUS; SOURCE 3 ORGANISM_TAXID: 11590; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS CAP SNATCHING ENDONUCLEASE, TOSCANA VIRUS, L PROTEIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.REGUERA,R.JONES,G.BRAGAGNIOLO,S.LESSOUED,M.MATE REVDAT 4 24-JAN-24 6QW0 1 LINK REVDAT 3 20-NOV-19 6QW0 1 JRNL REVDAT 2 16-OCT-19 6QW0 1 JRNL REVDAT 1 25-SEP-19 6QW0 0 JRNL AUTH R.JONES,S.LESSOUED,K.MEIER,S.DEVIGNOT,S.BARATA-GARCIA, JRNL AUTH 2 M.MATE,G.BRAGAGNOLO,F.WEBER,M.ROSENTHAL,J.REGUERA JRNL TITL STRUCTURE AND FUNCTION OF THE TOSCANA VIRUS CAP-SNATCHING JRNL TITL 2 ENDONUCLEASE. JRNL REF NUCLEIC ACIDS RES. V. 47 10914 2019 JRNL REFN ESSN 1362-4962 JRNL PMID 31584100 JRNL DOI 10.1093/NAR/GKZ838 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 99758 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 4959 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.5767 - 4.6594 0.99 3460 183 0.2113 0.2343 REMARK 3 2 4.6594 - 3.6988 0.99 3331 173 0.1778 0.2029 REMARK 3 3 3.6988 - 3.2313 0.99 3252 173 0.1807 0.2254 REMARK 3 4 3.2313 - 2.9360 0.99 3275 172 0.1934 0.2274 REMARK 3 5 2.9360 - 2.7255 0.99 3211 169 0.2006 0.2145 REMARK 3 6 2.7255 - 2.5649 0.99 3245 172 0.1994 0.2159 REMARK 3 7 2.5649 - 2.4364 0.99 3214 169 0.2065 0.2282 REMARK 3 8 2.4364 - 2.3304 0.99 3182 168 0.1980 0.2288 REMARK 3 9 2.3304 - 2.2406 0.98 3192 168 0.1932 0.2195 REMARK 3 10 2.2406 - 2.1633 0.98 3194 168 0.1978 0.2408 REMARK 3 11 2.1633 - 2.0957 0.98 3170 167 0.1908 0.2347 REMARK 3 12 2.0957 - 2.0358 0.97 3132 163 0.1981 0.2080 REMARK 3 13 2.0358 - 1.9822 0.98 3176 165 0.2056 0.2310 REMARK 3 14 1.9822 - 1.9338 0.99 3166 170 0.2164 0.2238 REMARK 3 15 1.9338 - 1.8899 0.97 3101 164 0.2172 0.2298 REMARK 3 16 1.8899 - 1.8496 0.97 3172 165 0.2220 0.2726 REMARK 3 17 1.8496 - 1.8126 0.98 3144 167 0.2235 0.2528 REMARK 3 18 1.8126 - 1.7784 0.97 3121 165 0.2278 0.2749 REMARK 3 19 1.7784 - 1.7467 0.98 3114 164 0.2272 0.2705 REMARK 3 20 1.7467 - 1.7171 0.97 3115 163 0.2578 0.2560 REMARK 3 21 1.7171 - 1.6894 0.97 3120 163 0.2651 0.2892 REMARK 3 22 1.6894 - 1.6634 0.98 3109 162 0.2940 0.3383 REMARK 3 23 1.6634 - 1.6389 0.97 3096 167 0.3176 0.3415 REMARK 3 24 1.6389 - 1.6158 0.96 3076 156 0.3505 0.3091 REMARK 3 25 1.6158 - 1.5940 0.96 3079 187 0.3725 0.4110 REMARK 3 26 1.5940 - 1.5733 0.97 3077 151 0.4069 0.4117 REMARK 3 27 1.5733 - 1.5536 0.96 3106 158 0.3852 0.4022 REMARK 3 28 1.5536 - 1.5349 0.97 3127 161 0.3786 0.3888 REMARK 3 29 1.5349 - 1.5170 0.95 3053 149 0.4087 0.4196 REMARK 3 30 1.5170 - 1.5000 0.93 2989 137 0.4046 0.4409 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3148 REMARK 3 ANGLE : 0.739 4285 REMARK 3 CHIRALITY : 0.056 499 REMARK 3 PLANARITY : 0.006 552 REMARK 3 DIHEDRAL : 2.538 2547 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QW0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1292100992. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 99878 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 47.553 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 2.49700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6QW5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5 0.75 M LISO4, REMARK 280 COUNTER-DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 50.42350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.92400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 50.42350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.92400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 SER A 40 REMARK 465 SER A 41 REMARK 465 ASP A 42 REMARK 465 GLY A 43 REMARK 465 PRO A 69 REMARK 465 ALA A 70 REMARK 465 ILE A 205 REMARK 465 ASN A 206 REMARK 465 PRO A 207 REMARK 465 ALA A 208 REMARK 465 LEU A 209 REMARK 465 PHE A 210 REMARK 465 ASP A 211 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 HIS B 39 REMARK 465 SER B 40 REMARK 465 SER B 41 REMARK 465 ASP B 42 REMARK 465 GLY B 43 REMARK 465 ALA B 54 REMARK 465 ASP B 55 REMARK 465 GLY B 56 REMARK 465 PRO B 69 REMARK 465 ALA B 70 REMARK 465 GLN B 71 REMARK 465 ASN B 72 REMARK 465 GLU B 101 REMARK 465 ASN B 102 REMARK 465 ASN B 206 REMARK 465 PRO B 207 REMARK 465 ALA B 208 REMARK 465 LEU B 209 REMARK 465 PHE B 210 REMARK 465 ASP B 211 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 3 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 38 CE NZ REMARK 470 HIS A 39 CG ND1 CD2 CE1 NE2 REMARK 470 VAL A 44 CG1 CG2 REMARK 470 ASP A 55 CG OD1 OD2 REMARK 470 VAL A 68 CG1 CG2 REMARK 470 GLN A 71 CB CG CD OE1 NE2 REMARK 470 ASN A 72 CG OD1 ND2 REMARK 470 LEU A 73 CB CG CD1 CD2 REMARK 470 ASP A 90 CB CG OD1 OD2 REMARK 470 GLU A 101 CG CD OE1 OE2 REMARK 470 ASN A 102 CG OD1 ND2 REMARK 470 ARG A 103 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 203 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 3 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 44 CG1 CG2 REMARK 470 GLN B 57 N CB CG CD OE1 NE2 REMARK 470 VAL B 68 CB CG1 CG2 REMARK 470 LEU B 73 CB CG CD1 CD2 REMARK 470 ASP B 90 CG OD1 OD2 REMARK 470 ARG B 103 CG CD NE CZ NH1 NH2 REMARK 470 PHE B 109 CE2 CZ REMARK 470 GLU B 117 CG CD OE1 OE2 REMARK 470 GLU B 119 CG CD OE1 OE2 REMARK 470 GLU B 204 CG CD OE1 OE2 REMARK 470 ILE B 205 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 26 48.92 -142.01 REMARK 500 TYR A 28 -131.99 65.22 REMARK 500 ASP A 29 77.22 -108.49 REMARK 500 ASP A 134 -169.04 -100.32 REMARK 500 ASP B 134 -167.65 -101.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN3 A 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 78 NE2 REMARK 620 2 ASP A 113 OD2 93.3 REMARK 620 3 GLU A 127 OE2 176.4 85.6 REMARK 620 4 PHE A 128 O 89.2 93.6 87.4 REMARK 620 5 HOH A 432 O 95.0 171.6 86.1 87.9 REMARK 620 6 HOH A 549 O 91.5 109.3 92.1 157.0 69.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN3 A 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 441 O REMARK 620 2 HOH A 529 O 89.1 REMARK 620 3 HOH A 549 O 82.1 169.9 REMARK 620 4 HOH A 574 O 105.8 100.6 77.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN3 B 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 78 NE2 REMARK 620 2 ASP B 113 OD2 92.9 REMARK 620 3 GLU B 127 OE2 178.2 86.5 REMARK 620 4 PHE B 128 O 89.9 93.6 88.5 REMARK 620 5 HOH B 404 O 91.1 175.1 89.6 89.2 REMARK 620 6 HOH B 553 O 93.6 115.1 88.1 150.8 61.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN3 B 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 113 OD1 REMARK 620 2 HOH B 470 O 91.6 REMARK 620 3 HOH B 515 O 93.4 89.7 REMARK 620 4 HOH B 553 O 96.8 82.7 167.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN3 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN3 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN3 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN3 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6QVV RELATED DB: PDB REMARK 900 APO FORM DBREF 6QW0 A 1 211 UNP S4ZA26 S4ZA26_TOSV 1 211 DBREF 6QW0 B 1 211 UNP S4ZA26 S4ZA26_TOSV 1 211 SEQADV 6QW0 GLY A 0 UNP S4ZA26 EXPRESSION TAG SEQADV 6QW0 ASP A 155 UNP S4ZA26 ASN 155 CONFLICT SEQADV 6QW0 GLY B 0 UNP S4ZA26 EXPRESSION TAG SEQADV 6QW0 ASP B 155 UNP S4ZA26 ASN 155 CONFLICT SEQRES 1 A 212 GLY MSE GLU ARG ILE LEU LYS LYS GLN PRO ALA PRO VAL SEQRES 2 A 212 ARG ALA LEU THR ILE HIS PRO LEU ARG ARG TYR GLU SER SEQRES 3 A 212 SER ILE TYR ASP THR PRO ILE PRO ALA TYR VAL ILE LYS SEQRES 4 A 212 HIS SER SER ASP GLY VAL THR ILE ASP ILE ALA THR SER SEQRES 5 A 212 GLU LEU ALA ASP GLY GLN SER GLY SER THR ILE GLN PRO SEQRES 6 A 212 PHE GLU SER VAL PRO ALA GLN ASN LEU THR LEU PHE LYS SEQRES 7 A 212 HIS ASP PHE THR PHE GLY HIS LEU ALA ASP THR THR ASP SEQRES 8 A 212 LYS LYS PHE VAL GLU VAL PHE GLY VAL LEU GLU ASN ARG SEQRES 9 A 212 ALA ASP ASP SER ASP PHE GLN SER PRO ASP MSE ILE ILE SEQRES 10 A 212 GLU THR GLU THR GLY HIS VAL TYR VAL VAL GLU PHE THR SEQRES 11 A 212 THR THR MSE GLY ASP ALA ASN SER ALA ASP LEU ALA ALA SEQRES 12 A 212 ARG ASN LYS ILE ALA LYS TYR GLU ILE ALA CYS LEU ASP SEQRES 13 A 212 ARG SER ALA ILE LYS PRO ILE SER LEU TYR ILE ILE ALA SEQRES 14 A 212 VAL HIS PHE ASN GLY VAL VAL SER ASN LEU ASP LEU SER SEQRES 15 A 212 ASP GLU GLU VAL ASN GLU ILE VAL PHE ARG PHE ARG LEU SEQRES 16 A 212 ALA ARG ASP ILE PHE GLU GLU LEU ARG GLU ILE ASN PRO SEQRES 17 A 212 ALA LEU PHE ASP SEQRES 1 B 212 GLY MSE GLU ARG ILE LEU LYS LYS GLN PRO ALA PRO VAL SEQRES 2 B 212 ARG ALA LEU THR ILE HIS PRO LEU ARG ARG TYR GLU SER SEQRES 3 B 212 SER ILE TYR ASP THR PRO ILE PRO ALA TYR VAL ILE LYS SEQRES 4 B 212 HIS SER SER ASP GLY VAL THR ILE ASP ILE ALA THR SER SEQRES 5 B 212 GLU LEU ALA ASP GLY GLN SER GLY SER THR ILE GLN PRO SEQRES 6 B 212 PHE GLU SER VAL PRO ALA GLN ASN LEU THR LEU PHE LYS SEQRES 7 B 212 HIS ASP PHE THR PHE GLY HIS LEU ALA ASP THR THR ASP SEQRES 8 B 212 LYS LYS PHE VAL GLU VAL PHE GLY VAL LEU GLU ASN ARG SEQRES 9 B 212 ALA ASP ASP SER ASP PHE GLN SER PRO ASP MSE ILE ILE SEQRES 10 B 212 GLU THR GLU THR GLY HIS VAL TYR VAL VAL GLU PHE THR SEQRES 11 B 212 THR THR MSE GLY ASP ALA ASN SER ALA ASP LEU ALA ALA SEQRES 12 B 212 ARG ASN LYS ILE ALA LYS TYR GLU ILE ALA CYS LEU ASP SEQRES 13 B 212 ARG SER ALA ILE LYS PRO ILE SER LEU TYR ILE ILE ALA SEQRES 14 B 212 VAL HIS PHE ASN GLY VAL VAL SER ASN LEU ASP LEU SER SEQRES 15 B 212 ASP GLU GLU VAL ASN GLU ILE VAL PHE ARG PHE ARG LEU SEQRES 16 B 212 ALA ARG ASP ILE PHE GLU GLU LEU ARG GLU ILE ASN PRO SEQRES 17 B 212 ALA LEU PHE ASP MODRES 6QW0 MSE A 114 MET MODIFIED RESIDUE MODRES 6QW0 MSE A 132 MET MODIFIED RESIDUE MODRES 6QW0 MSE B 114 MET MODIFIED RESIDUE MODRES 6QW0 MSE B 132 MET MODIFIED RESIDUE HET MSE A 114 8 HET MSE A 132 8 HET MSE B 114 8 HET MSE B 132 8 HET MN3 A 301 1 HET MN3 A 302 1 HET SO4 A 303 5 HET SO4 A 304 5 HET SO4 A 305 5 HET GOL A 306 6 HET MN3 B 301 1 HET MN3 B 302 1 HET SO4 B 303 5 HET GOL B 304 6 HETNAM MSE SELENOMETHIONINE HETNAM MN3 MANGANESE (III) ION HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 MN3 4(MN 3+) FORMUL 5 SO4 4(O4 S 2-) FORMUL 8 GOL 2(C3 H8 O3) FORMUL 13 HOH *364(H2 O) HELIX 1 AA1 ARG A 3 GLN A 8 5 6 HELIX 2 AA2 THR A 50 LEU A 53 5 4 HELIX 3 AA3 LEU A 75 PHE A 82 1 8 HELIX 4 AA4 LYS A 92 GLY A 98 1 7 HELIX 5 AA5 ASP A 105 GLN A 110 5 6 HELIX 6 AA6 ASP A 134 SER A 157 1 24 HELIX 7 AA7 SER A 181 ARG A 203 1 23 HELIX 8 AA8 ARG B 3 GLN B 8 5 6 HELIX 9 AA9 THR B 50 LEU B 53 5 4 HELIX 10 AB1 LEU B 75 PHE B 82 1 8 HELIX 11 AB2 LYS B 92 GLY B 98 1 7 HELIX 12 AB3 ASP B 105 GLN B 110 1 6 HELIX 13 AB4 ASP B 134 SER B 157 1 24 HELIX 14 AB5 SER B 181 ARG B 203 1 23 SHEET 1 AA1 4 LEU A 15 THR A 16 0 SHEET 2 AA1 4 ILE A 162 HIS A 170 1 O ILE A 162 N THR A 16 SHEET 3 AA1 4 GLY A 173 SER A 176 -1 O VAL A 175 N ALA A 168 SHEET 4 AA1 4 ARG A 21 GLU A 24 -1 N TYR A 23 O VAL A 174 SHEET 1 AA2 4 LEU A 15 THR A 16 0 SHEET 2 AA2 4 ILE A 162 HIS A 170 1 O ILE A 162 N THR A 16 SHEET 3 AA2 4 VAL A 123 THR A 130 1 N VAL A 125 O TYR A 165 SHEET 4 AA2 4 MSE A 114 GLU A 117 -1 N ILE A 116 O TYR A 124 SHEET 1 AA3 3 TYR A 35 LYS A 38 0 SHEET 2 AA3 3 THR A 45 ILE A 48 -1 O THR A 45 N LYS A 38 SHEET 3 AA3 3 PHE A 65 SER A 67 -1 O GLU A 66 N ILE A 46 SHEET 1 AA4 4 LEU B 15 THR B 16 0 SHEET 2 AA4 4 ILE B 162 HIS B 170 1 O ILE B 162 N THR B 16 SHEET 3 AA4 4 GLY B 173 SER B 176 -1 O VAL B 175 N ALA B 168 SHEET 4 AA4 4 ARG B 21 GLU B 24 -1 N TYR B 23 O VAL B 174 SHEET 1 AA5 4 LEU B 15 THR B 16 0 SHEET 2 AA5 4 ILE B 162 HIS B 170 1 O ILE B 162 N THR B 16 SHEET 3 AA5 4 VAL B 123 THR B 130 1 N VAL B 125 O TYR B 165 SHEET 4 AA5 4 MSE B 114 GLU B 117 -1 N ILE B 116 O TYR B 124 SHEET 1 AA6 3 TYR B 35 ILE B 37 0 SHEET 2 AA6 3 THR B 45 ILE B 48 -1 O ASP B 47 N VAL B 36 SHEET 3 AA6 3 PHE B 65 SER B 67 -1 O GLU B 66 N ILE B 46 LINK C ASP A 113 N MSE A 114 1555 1555 1.33 LINK C MSE A 114 N ILE A 115 1555 1555 1.34 LINK C THR A 131 N MSE A 132 1555 1555 1.33 LINK C MSE A 132 N GLY A 133 1555 1555 1.33 LINK C ASP B 113 N MSE B 114 1555 1555 1.33 LINK C MSE B 114 N ILE B 115 1555 1555 1.34 LINK C THR B 131 N MSE B 132 1555 1555 1.33 LINK C MSE B 132 N GLY B 133 1555 1555 1.32 LINK NE2 HIS A 78 MN MN3 A 301 1555 1555 2.31 LINK OD2 ASP A 113 MN MN3 A 301 1555 1555 2.25 LINK OE2 GLU A 127 MN MN3 A 301 1555 1555 2.24 LINK O PHE A 128 MN MN3 A 301 1555 1555 2.27 LINK MN MN3 A 301 O HOH A 432 1555 1555 2.36 LINK MN MN3 A 301 O HOH A 549 1555 1555 2.37 LINK MN MN3 A 302 O HOH A 441 1555 1555 2.43 LINK MN MN3 A 302 O HOH A 529 1555 1555 2.41 LINK MN MN3 A 302 O HOH A 549 1555 1555 2.24 LINK MN MN3 A 302 O HOH A 574 1555 1555 2.58 LINK NE2 HIS B 78 MN MN3 B 301 1555 1555 2.32 LINK OD2 ASP B 113 MN MN3 B 301 1555 1555 2.24 LINK OD1 ASP B 113 MN MN3 B 302 1555 1555 2.70 LINK OE2 GLU B 127 MN MN3 B 301 1555 1555 2.28 LINK O PHE B 128 MN MN3 B 301 1555 1555 2.28 LINK MN MN3 B 301 O HOH B 404 1555 1555 2.36 LINK MN MN3 B 301 O HOH B 553 1555 1555 2.50 LINK MN MN3 B 302 O HOH B 470 1555 1555 2.39 LINK MN MN3 B 302 O HOH B 515 1555 1555 2.56 LINK MN MN3 B 302 O HOH B 553 1555 1555 2.34 SITE 1 AC1 6 HIS A 78 ASP A 113 GLU A 127 PHE A 128 SITE 2 AC1 6 HOH A 432 HOH A 549 SITE 1 AC2 6 ASP A 113 HOH A 441 HOH A 513 HOH A 529 SITE 2 AC2 6 HOH A 549 HOH A 574 SITE 1 AC3 6 SER A 25 SER A 26 ILE A 27 TYR A 28 SITE 2 AC3 6 ARG A 193 HOH A 486 SITE 1 AC4 6 ASP A 134 ALA A 135 ASN A 172 HOH A 402 SITE 2 AC4 6 HOH A 410 HOH A 530 SITE 1 AC5 4 HIS A 78 THR A 129 THR A 130 HOH A 432 SITE 1 AC6 7 GLU A 2 SER A 60 THR A 61 GLU A 183 SITE 2 AC6 7 GLU A 184 HOH A 401 HOH A 488 SITE 1 AC7 6 HIS B 78 ASP B 113 GLU B 127 PHE B 128 SITE 2 AC7 6 HOH B 404 HOH B 553 SITE 1 AC8 5 ASP B 113 HOH B 470 HOH B 499 HOH B 515 SITE 2 AC8 5 HOH B 553 SITE 1 AC9 5 HIS B 78 THR B 129 THR B 130 LYS B 145 SITE 2 AC9 5 HOH B 404 SITE 1 AD1 6 THR B 61 GLU B 66 HIS B 84 ARG B 191 SITE 2 AD1 6 HOH B 407 HOH B 531 CRYST1 100.847 107.848 58.200 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009916 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009272 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017182 0.00000