HEADER ANTIMICROBIAL PROTEIN 05-MAR-19 6QW8 TITLE CRYSTAL STRUCTURE OF CTX-M-15 COMPLEXED WITH RELEBACTAM (16 HOUR SOAK) COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.5.2.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 GENE: BLACTX-M-15; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: SOLU KEYWDS INHIBITOR, RELEBACTAM, DIAZABICYCLOOCTANE, ANTIBIOTIC RESISTANCE., KEYWDS 2 ANTIMICROBIAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.L.TOOKE,P.HINCHLIFFE,J.SPENCER REVDAT 5 09-OCT-24 6QW8 1 REMARK REVDAT 4 24-JAN-24 6QW8 1 REMARK REVDAT 3 02-OCT-19 6QW8 1 JRNL REVDAT 2 18-SEP-19 6QW8 1 COMPND SOURCE DBREF SEQADV REVDAT 1 21-AUG-19 6QW8 0 JRNL AUTH C.L.TOOKE,P.HINCHLIFFE,P.A.LANG,A.J.MULHOLLAND,J.BREM, JRNL AUTH 2 C.J.SCHOFIELD,J.SPENCER JRNL TITL MOLECULAR BASIS OF CLASS A BETA-LACTAMASE INHIBITION BY JRNL TITL 2 RELEBACTAM. JRNL REF ANTIMICROB.AGENTS CHEMOTHER. V. 63 2019 JRNL REFN ESSN 1098-6596 JRNL PMID 31383664 JRNL DOI 10.1128/AAC.00564-19 REMARK 2 REMARK 2 RESOLUTION. 1.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.510 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 97784 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.116 REMARK 3 R VALUE (WORKING SET) : 0.115 REMARK 3 FREE R VALUE : 0.131 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.170 REMARK 3 FREE R VALUE TEST SET COUNT : 5057 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.5322 - 3.4174 1.00 3346 196 0.1479 0.1595 REMARK 3 2 3.4174 - 2.7126 1.00 3227 164 0.1349 0.1482 REMARK 3 3 2.7126 - 2.3698 1.00 3137 203 0.1159 0.1302 REMARK 3 4 2.3698 - 2.1531 1.00 3182 148 0.1101 0.1270 REMARK 3 5 2.1531 - 1.9988 1.00 3128 156 0.1004 0.1195 REMARK 3 6 1.9988 - 1.8809 1.00 3138 165 0.1014 0.1158 REMARK 3 7 1.8809 - 1.7867 1.00 3106 181 0.1055 0.1196 REMARK 3 8 1.7867 - 1.7090 1.00 3098 188 0.1006 0.1114 REMARK 3 9 1.7090 - 1.6432 1.00 3148 125 0.0993 0.1204 REMARK 3 10 1.6432 - 1.5865 1.00 3130 142 0.0928 0.1141 REMARK 3 11 1.5865 - 1.5369 1.00 3074 176 0.0933 0.1120 REMARK 3 12 1.5369 - 1.4929 1.00 3113 173 0.0946 0.1307 REMARK 3 13 1.4929 - 1.4536 1.00 3104 161 0.0955 0.1254 REMARK 3 14 1.4536 - 1.4182 1.00 3072 176 0.0959 0.1083 REMARK 3 15 1.4182 - 1.3859 1.00 3071 171 0.0989 0.1241 REMARK 3 16 1.3859 - 1.3564 1.00 3085 145 0.1069 0.1279 REMARK 3 17 1.3564 - 1.3293 1.00 3108 169 0.1071 0.1415 REMARK 3 18 1.3293 - 1.3042 1.00 3059 179 0.1084 0.1146 REMARK 3 19 1.3042 - 1.2809 1.00 3096 170 0.1069 0.1222 REMARK 3 20 1.2809 - 1.2592 1.00 3061 191 0.1064 0.1277 REMARK 3 21 1.2592 - 1.2389 1.00 3067 135 0.1076 0.1221 REMARK 3 22 1.2389 - 1.2198 1.00 3088 168 0.1096 0.1294 REMARK 3 23 1.2198 - 1.2019 1.00 3038 173 0.1099 0.1270 REMARK 3 24 1.2019 - 1.1849 1.00 3073 195 0.1172 0.1294 REMARK 3 25 1.1849 - 1.1689 1.00 3068 147 0.1172 0.1222 REMARK 3 26 1.1689 - 1.1538 1.00 3057 195 0.1188 0.1350 REMARK 3 27 1.1538 - 1.1393 0.99 3016 162 0.1224 0.1318 REMARK 3 28 1.1393 - 1.1256 0.99 3050 171 0.1304 0.1402 REMARK 3 29 1.1256 - 1.1125 0.97 2932 172 0.1319 0.1393 REMARK 3 30 1.1125 - 1.1000 0.93 2855 160 0.1389 0.1526 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.060 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 9.780 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 2124 REMARK 3 ANGLE : 1.461 2890 REMARK 3 CHIRALITY : 0.097 331 REMARK 3 PLANARITY : 0.021 376 REMARK 3 DIHEDRAL : 20.990 805 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QW8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1292101030. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 97874 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.100 REMARK 200 RESOLUTION RANGE LOW (A) : 44.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 11.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.12 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4HBT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M AMMONIUM SULPHATE, 0.1 M TRIS REMARK 280 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.26900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.95750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.78150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.95750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.26900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 22.78150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 24 REMARK 465 PRO A 25 REMARK 465 GLN A 26 REMARK 465 THR A 27 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 216 O HOH A 401 2.06 REMARK 500 OE1 GLN A 154 O HOH A 402 2.06 REMARK 500 O HOH A 414 O HOH A 427 2.08 REMARK 500 O2 SO4 A 302 O HOH A 403 2.08 REMARK 500 O HOH A 429 O HOH A 640 2.08 REMARK 500 O HOH A 424 O HOH A 695 2.10 REMARK 500 O HOH A 485 O HOH A 618 2.11 REMARK 500 O HOH A 606 O HOH A 616 2.11 REMARK 500 O HOH A 466 O HOH A 643 2.13 REMARK 500 O HOH A 415 O HOH A 618 2.13 REMARK 500 O HOH A 560 O HOH A 651 2.15 REMARK 500 O HOH A 503 O HOH A 654 2.15 REMARK 500 OD1 ASN A 104 O HOH A 404 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HG3 GLU A 96 O4 SO4 A 302 3555 1.59 REMARK 500 O HOH A 427 O HOH A 752 3545 2.08 REMARK 500 O HOH A 429 O HOH A 505 1545 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 36 CD GLU A 36 OE1 0.189 REMARK 500 GLU A 36 CD GLU A 36 OE2 0.176 REMARK 500 GLU A 158 CD GLU A 158 OE2 0.105 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 36 OE1 - CD - OE2 ANGL. DEV. = 7.8 DEGREES REMARK 500 ARG A 191 CG - CD - NE ANGL. DEV. = 17.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 69 -138.72 52.30 REMARK 500 VAL A 103 -144.07 -124.68 REMARK 500 SER A 220 -123.84 -103.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 39 0.12 SIDE CHAIN REMARK 500 ARG A 191 0.24 SIDE CHAIN REMARK 500 ARG A 204 0.09 SIDE CHAIN REMARK 500 TYR A 262 0.08 SIDE CHAIN REMARK 500 ARG A 274 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 766 DISTANCE = 6.88 ANGSTROMS REMARK 525 HOH A 767 DISTANCE = 7.04 ANGSTROMS REMARK 525 HOH A 768 DISTANCE = 8.86 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MK7 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 305 DBREF 6QW8 A 26 288 UNP G3G192 G3G192_KLEPN 49 311 SEQADV 6QW8 GLY A 24 UNP G3G192 EXPRESSION TAG SEQADV 6QW8 PRO A 25 UNP G3G192 EXPRESSION TAG SEQRES 1 A 265 GLY PRO GLN THR ALA ASP VAL GLN GLN LYS LEU ALA GLU SEQRES 2 A 265 LEU GLU ARG GLN SER GLY GLY ARG LEU GLY VAL ALA LEU SEQRES 3 A 265 ILE ASN THR ALA ASP ASN SER GLN ILE LEU TYR ARG ALA SEQRES 4 A 265 ASP GLU ARG PHE ALA MET CYS SER THR SER LYS VAL MET SEQRES 5 A 265 ALA ALA ALA ALA VAL LEU LYS LYS SER GLU SER GLU PRO SEQRES 6 A 265 ASN LEU LEU ASN GLN ARG VAL GLU ILE LYS LYS SER ASP SEQRES 7 A 265 LEU VAL ASN TYR ASN PRO ILE ALA GLU LYS HIS VAL ASN SEQRES 8 A 265 GLY THR MET SER LEU ALA GLU LEU SER ALA ALA ALA LEU SEQRES 9 A 265 GLN TYR SER ASP ASN VAL ALA MET ASN LYS LEU ILE ALA SEQRES 10 A 265 HIS VAL GLY GLY PRO ALA SER VAL THR ALA PHE ALA ARG SEQRES 11 A 265 GLN LEU GLY ASP GLU THR PHE ARG LEU ASP ARG THR GLU SEQRES 12 A 265 PRO THR LEU ASN THR ALA ILE PRO GLY ASP PRO ARG ASP SEQRES 13 A 265 THR THR SER PRO ARG ALA MET ALA GLN THR LEU ARG ASN SEQRES 14 A 265 LEU THR LEU GLY LYS ALA LEU GLY ASP SER GLN ARG ALA SEQRES 15 A 265 GLN LEU VAL THR TRP MET LYS GLY ASN THR THR GLY ALA SEQRES 16 A 265 ALA SER ILE GLN ALA GLY LEU PRO ALA SER TRP VAL VAL SEQRES 17 A 265 GLY ASP LYS THR GLY SER GLY GLY TYR GLY THR THR ASN SEQRES 18 A 265 ASP ILE ALA VAL ILE TRP PRO LYS ASP ARG ALA PRO LEU SEQRES 19 A 265 ILE LEU VAL THR TYR PHE THR GLN PRO GLN PRO LYS ALA SEQRES 20 A 265 GLU SER ARG ARG ASP VAL LEU ALA SER ALA ALA LYS ILE SEQRES 21 A 265 VAL THR ASP GLY LEU HET MK7 A 301 86 HET SO4 A 302 5 HET SO4 A 303 5 HET SO4 A 304 5 HET GOL A 305 14 HETNAM MK7 (2S,5R)-1-FORMYL-N-(PIPERIDIN-4-YL)-5-[(SULFOOXY) HETNAM 2 MK7 AMINO]PIPERIDINE-2-CARBOXAMIDE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN MK7 MK-7655, BOUND FORM HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 MK7 C12 H22 N4 O6 S FORMUL 3 SO4 3(O4 S 2-) FORMUL 6 GOL C3 H8 O3 FORMUL 7 HOH *368(H2 O) HELIX 1 AA1 ALA A 28 GLY A 42 1 15 HELIX 2 AA2 CYS A 69 THR A 71 5 3 HELIX 3 AA3 SER A 72 GLU A 85 1 14 HELIX 4 AA4 LYS A 98 LEU A 102 5 5 HELIX 5 AA5 ILE A 108 VAL A 113 5 6 HELIX 6 AA6 LEU A 119 TYR A 129 1 11 HELIX 7 AA7 ASP A 131 VAL A 142 1 12 HELIX 8 AA8 GLY A 144 LEU A 155 1 12 HELIX 9 AA9 PRO A 167 THR A 171 5 5 HELIX 10 AB1 SER A 182 LEU A 195 1 14 HELIX 11 AB2 GLY A 200 GLY A 213 1 14 HELIX 12 AB3 SER A 220 LEU A 225 5 6 HELIX 13 AB4 ARG A 273 ASP A 286 1 14 SHEET 1 AA1 5 SER A 56 TYR A 60 0 SHEET 2 AA1 5 ARG A 44 ASN A 51 -1 N ASN A 51 O SER A 56 SHEET 3 AA1 5 LEU A 257 THR A 264 -1 O TYR A 262 N GLY A 46 SHEET 4 AA1 5 THR A 242 TRP A 250 -1 N ASP A 245 O THR A 261 SHEET 5 AA1 5 VAL A 230 GLY A 238 -1 N VAL A 230 O TRP A 250 SHEET 1 AA2 2 PHE A 66 ALA A 67 0 SHEET 2 AA2 2 THR A 180 THR A 181 -1 O THR A 181 N PHE A 66 SHEET 1 AA3 2 ARG A 94 GLU A 96 0 SHEET 2 AA3 2 THR A 116 SER A 118 -1 O MET A 117 N VAL A 95 LINK OG SER A 70 C8 AMK7 A 301 1555 1555 1.34 LINK OG SER A 70 C8 BMK7 A 301 1555 1555 1.36 CISPEP 1 GLU A 166 PRO A 167 0 6.70 SITE 1 AC1 20 ARG A 39 CYS A 69 SER A 70 ASN A 104 SITE 2 AC1 20 TYR A 105 SER A 130 ASN A 132 ASN A 170 SITE 3 AC1 20 THR A 216 LYS A 234 THR A 235 GLY A 236 SITE 4 AC1 20 SER A 237 HOH A 404 HOH A 425 HOH A 428 SITE 5 AC1 20 HOH A 438 HOH A 444 HOH A 514 HOH A 610 SITE 1 AC2 9 VAL A 95 GLU A 96 HOH A 403 HOH A 410 SITE 2 AC2 9 HOH A 412 HOH A 420 HOH A 421 HOH A 570 SITE 3 AC2 9 HOH A 585 SITE 1 AC3 2 ARG A 61 HOH A 691 SITE 1 AC4 9 ARG A 153 LYS A 197 HOH A 439 HOH A 509 SITE 2 AC4 9 HOH A 518 HOH A 533 HOH A 589 HOH A 591 SITE 3 AC4 9 HOH A 758 SITE 1 AC5 4 ARG A 39 GLU A 271 SER A 272 ARG A 274 CRYST1 44.538 45.563 117.915 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022453 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021948 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008481 0.00000