HEADER ANTIMICROBIAL PROTEIN 05-MAR-19 6QWA
TITLE CRYSTAL STRUCTURE OF KPC-3 COMPLEXED WITH RELEBACTAM (16 HOUR SOAK)
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: BETA-LACTAMASE;
COMPND 3 CHAIN: A;
COMPND 4 EC: 3.5.2.6;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE;
SOURCE 3 ORGANISM_TAXID: 573;
SOURCE 4 GENE: BLA, BLAKPC-3, KPC3, DXF97_27070;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3)
KEYWDS INHIBITOR, RELEBACTAM, DIAZABICYCLOOCTANE, ANTIBIOTIC RESISTANCE.,
KEYWDS 2 ANTIMICROBIAL PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR C.L.TOOKE,P.HINCHLIFFE,J.SPENCER
REVDAT 4 13-NOV-24 6QWA 1 REMARK
REVDAT 3 24-JAN-24 6QWA 1 REMARK
REVDAT 2 02-OCT-19 6QWA 1 JRNL
REVDAT 1 21-AUG-19 6QWA 0
JRNL AUTH C.L.TOOKE,P.HINCHLIFFE,P.A.LANG,A.J.MULHOLLAND,J.BREM,
JRNL AUTH 2 C.J.SCHOFIELD,J.SPENCER
JRNL TITL MOLECULAR BASIS OF CLASS A BETA-LACTAMASE INHIBITION BY
JRNL TITL 2 RELEBACTAM.
JRNL REF ANTIMICROB.AGENTS CHEMOTHER. V. 63 2019
JRNL REFN ESSN 1098-6596
JRNL PMID 31383664
JRNL DOI 10.1128/AAC.00564-19
REMARK 2
REMARK 2 RESOLUTION. 1.06 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX (1.12_2829: ???)
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.06
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.81
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340
REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7
REMARK 3 NUMBER OF REFLECTIONS : 118930
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.122
REMARK 3 R VALUE (WORKING SET) : 0.121
REMARK 3 FREE R VALUE : 0.143
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030
REMARK 3 FREE R VALUE TEST SET COUNT : 5987
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 55.8835 - 3.2935 1.00 4067 235 0.1519 0.1769
REMARK 3 2 3.2935 - 2.6141 1.00 3897 237 0.1357 0.1558
REMARK 3 3 2.6141 - 2.2837 1.00 3917 189 0.1180 0.1478
REMARK 3 4 2.2837 - 2.0749 1.00 3838 214 0.1109 0.1238
REMARK 3 5 2.0749 - 1.9261 1.00 3834 210 0.1072 0.1259
REMARK 3 6 1.9261 - 1.8126 1.00 3829 223 0.1052 0.1194
REMARK 3 7 1.8126 - 1.7218 1.00 3796 222 0.0986 0.1155
REMARK 3 8 1.7218 - 1.6468 1.00 3792 217 0.0922 0.1070
REMARK 3 9 1.6468 - 1.5834 1.00 3806 186 0.0888 0.1020
REMARK 3 10 1.5834 - 1.5288 0.99 3774 233 0.0936 0.1229
REMARK 3 11 1.5288 - 1.4810 0.99 3754 201 0.0885 0.1096
REMARK 3 12 1.4810 - 1.4386 0.99 3806 172 0.0953 0.1171
REMARK 3 13 1.4386 - 1.4008 0.99 3774 204 0.0967 0.1246
REMARK 3 14 1.4008 - 1.3666 0.99 3745 202 0.1029 0.1263
REMARK 3 15 1.3666 - 1.3355 0.99 3774 194 0.1042 0.1378
REMARK 3 16 1.3355 - 1.3071 0.99 3722 195 0.1076 0.1216
REMARK 3 17 1.3071 - 1.2809 0.99 3764 202 0.1119 0.1477
REMARK 3 18 1.2809 - 1.2568 0.98 3745 177 0.1124 0.1376
REMARK 3 19 1.2568 - 1.2343 0.98 3709 186 0.1153 0.1390
REMARK 3 20 1.2343 - 1.2134 0.98 3709 205 0.1169 0.1338
REMARK 3 21 1.2134 - 1.1938 0.98 3725 182 0.1247 0.1367
REMARK 3 22 1.1938 - 1.1755 0.98 3702 205 0.1262 0.1612
REMARK 3 23 1.1755 - 1.1582 0.98 3668 191 0.1308 0.1461
REMARK 3 24 1.1582 - 1.1419 0.98 3715 192 0.1321 0.1717
REMARK 3 25 1.1419 - 1.1264 0.98 3703 191 0.1413 0.1526
REMARK 3 26 1.1264 - 1.1118 0.98 3682 184 0.1520 0.1599
REMARK 3 27 1.1118 - 1.0979 0.97 3697 166 0.1567 0.1749
REMARK 3 28 1.0979 - 1.0847 0.97 3660 213 0.1718 0.1906
REMARK 3 29 1.0847 - 1.0720 0.97 3653 172 0.1895 0.2264
REMARK 3 30 1.0720 - 1.0600 0.97 3686 187 0.2027 0.2278
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : NULL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.070
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 12.600
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.010 2225
REMARK 3 ANGLE : 1.357 3047
REMARK 3 CHIRALITY : 0.098 341
REMARK 3 PLANARITY : 0.013 400
REMARK 3 DIHEDRAL : 13.231 812
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6QWA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-MAR-19.
REMARK 100 THE DEPOSITION ID IS D_1292101015.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 04-AUG-18
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : DIAMOND
REMARK 200 BEAMLINE : I04
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.86
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : AIMLESS
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 118930
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.060
REMARK 200 RESOLUTION RANGE LOW (A) : 60.130
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9
REMARK 200 DATA REDUNDANCY : 13.10
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.0000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.06
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.08
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 5UL8
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 42.57
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M AMMONIUM SULPHATE, 5% ETHANOL,
REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294.15K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z
REMARK 290 3555 -X+1/2,Y+1/2,-Z
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 30.06400
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.35850
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.06400
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.35850
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 770 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 10700 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 375
REMARK 375 SPECIAL POSITION
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL
REMARK 375 POSITIONS.
REMARK 375
REMARK 375 ATOM RES CSSEQI
REMARK 375 HOH A 495 LIES ON A SPECIAL POSITION.
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 4
REMARK 465 GLY A 5
REMARK 465 SER A 6
REMARK 465 SER A 7
REMARK 465 HIS A 8
REMARK 465 HIS A 9
REMARK 465 HIS A 10
REMARK 465 HIS A 11
REMARK 465 HIS A 12
REMARK 465 HIS A 13
REMARK 465 SER A 14
REMARK 465 SER A 15
REMARK 465 GLY A 16
REMARK 465 LEU A 17
REMARK 465 VAL A 18
REMARK 465 PRO A 19
REMARK 465 ARG A 20
REMARK 465 GLY A 21
REMARK 465 SER A 22
REMARK 465 HIS A 23
REMARK 465 MET A 24
REMARK 465 GLN A 295
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O HOH A 435 O HOH A 657 1.93
REMARK 500 O HOH A 405 O HOH A 637 2.03
REMARK 500 O HOH A 673 O HOH A 682 2.09
REMARK 500 O HOH A 741 O HOH A 757 2.10
REMARK 500 O HOH A 469 O HOH A 695 2.11
REMARK 500 O HOH A 419 O HOH A 462 2.12
REMARK 500 O HOH A 600 O HOH A 656 2.17
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 O HOH A 541 O HOH A 603 4456 2.12
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 ARG A 266 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 CYS A 69 -143.62 54.51
REMARK 500 TRP A 105 67.29 66.35
REMARK 500 ARG A 220 -124.55 -115.31
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: PLANAR GROUPS
REMARK 500
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS
REMARK 500 AN RMSD GREATER THAN THIS VALUE
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI RMS TYPE
REMARK 500 ARG A 153 0.10 SIDE CHAIN
REMARK 500 ARG A 284 0.09 SIDE CHAIN
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH A 768 DISTANCE = 6.03 ANGSTROMS
REMARK 525 HOH A 769 DISTANCE = 6.14 ANGSTROMS
REMARK 525 HOH A 770 DISTANCE = 6.23 ANGSTROMS
REMARK 525 HOH A 771 DISTANCE = 6.26 ANGSTROMS
REMARK 525 HOH A 772 DISTANCE = 6.33 ANGSTROMS
REMARK 525 HOH A 773 DISTANCE = 6.47 ANGSTROMS
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 303
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EOH A 304
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue MK7 A 305
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue JJT A 306
DBREF 6QWA A 25 295 UNP Q93DC4 Q93DC4_KLEPN 25 293
SEQADV 6QWA MET A 4 UNP Q93DC4 INITIATING METHIONINE
SEQADV 6QWA GLY A 5 UNP Q93DC4 EXPRESSION TAG
SEQADV 6QWA SER A 6 UNP Q93DC4 EXPRESSION TAG
SEQADV 6QWA SER A 7 UNP Q93DC4 EXPRESSION TAG
SEQADV 6QWA HIS A 8 UNP Q93DC4 EXPRESSION TAG
SEQADV 6QWA HIS A 9 UNP Q93DC4 EXPRESSION TAG
SEQADV 6QWA HIS A 10 UNP Q93DC4 EXPRESSION TAG
SEQADV 6QWA HIS A 11 UNP Q93DC4 EXPRESSION TAG
SEQADV 6QWA HIS A 12 UNP Q93DC4 EXPRESSION TAG
SEQADV 6QWA HIS A 13 UNP Q93DC4 EXPRESSION TAG
SEQADV 6QWA SER A 14 UNP Q93DC4 EXPRESSION TAG
SEQADV 6QWA SER A 15 UNP Q93DC4 EXPRESSION TAG
SEQADV 6QWA GLY A 16 UNP Q93DC4 EXPRESSION TAG
SEQADV 6QWA LEU A 17 UNP Q93DC4 EXPRESSION TAG
SEQADV 6QWA VAL A 18 UNP Q93DC4 EXPRESSION TAG
SEQADV 6QWA PRO A 19 UNP Q93DC4 EXPRESSION TAG
SEQADV 6QWA ARG A 20 UNP Q93DC4 EXPRESSION TAG
SEQADV 6QWA GLY A 21 UNP Q93DC4 EXPRESSION TAG
SEQADV 6QWA SER A 22 UNP Q93DC4 EXPRESSION TAG
SEQADV 6QWA HIS A 23 UNP Q93DC4 EXPRESSION TAG
SEQADV 6QWA MET A 24 UNP Q93DC4 EXPRESSION TAG
SEQRES 1 A 290 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY
SEQRES 2 A 290 LEU VAL PRO ARG GLY SER HIS MET LEU THR ASN LEU VAL
SEQRES 3 A 290 ALA GLU PRO PHE ALA LYS LEU GLU GLN ASP PHE GLY GLY
SEQRES 4 A 290 SER ILE GLY VAL TYR ALA MET ASP THR GLY SER GLY ALA
SEQRES 5 A 290 THR VAL SER TYR ARG ALA GLU GLU ARG PHE PRO LEU CYS
SEQRES 6 A 290 SER SER PHE LYS GLY PHE LEU ALA ALA ALA VAL LEU ALA
SEQRES 7 A 290 ARG SER GLN GLN GLN ALA GLY LEU LEU ASP THR PRO ILE
SEQRES 8 A 290 ARG TYR GLY LYS ASN ALA LEU VAL PRO TRP SER PRO ILE
SEQRES 9 A 290 SER GLU LYS TYR LEU THR THR GLY MET THR VAL ALA GLU
SEQRES 10 A 290 LEU SER ALA ALA ALA VAL GLN TYR SER ASP ASN ALA ALA
SEQRES 11 A 290 ALA ASN LEU LEU LEU LYS GLU LEU GLY GLY PRO ALA GLY
SEQRES 12 A 290 LEU THR ALA PHE MET ARG SER ILE GLY ASP THR THR PHE
SEQRES 13 A 290 ARG LEU ASP ARG TRP GLU LEU GLU LEU ASN SER ALA ILE
SEQRES 14 A 290 PRO GLY ASP ALA ARG ASP THR SER SER PRO ARG ALA VAL
SEQRES 15 A 290 THR GLU SER LEU GLN LYS LEU THR LEU GLY SER ALA LEU
SEQRES 16 A 290 ALA ALA PRO GLN ARG GLN GLN PHE VAL ASP TRP LEU LYS
SEQRES 17 A 290 GLY ASN THR THR GLY ASN HIS ARG ILE ARG ALA ALA VAL
SEQRES 18 A 290 PRO ALA ASP TRP ALA VAL GLY ASP LYS THR GLY THR CYS
SEQRES 19 A 290 GLY VAL TYR GLY THR ALA ASN ASP TYR ALA VAL VAL TRP
SEQRES 20 A 290 PRO THR GLY ARG ALA PRO ILE VAL LEU ALA VAL TYR THR
SEQRES 21 A 290 ARG ALA PRO ASN LYS ASP ASP LYS TYR SER GLU ALA VAL
SEQRES 22 A 290 ILE ALA ALA ALA ALA ARG LEU ALA LEU GLU GLY LEU GLY
SEQRES 23 A 290 VAL ASN GLY GLN
HET SO4 A 301 5
HET SO4 A 302 5
HET GOL A 303 14
HET EOH A 304 9
HET MK7 A 305 43
HET JJT A 306 37
HETNAM SO4 SULFATE ION
HETNAM GOL GLYCEROL
HETNAM EOH ETHANOL
HETNAM MK7 (2S,5R)-1-FORMYL-N-(PIPERIDIN-4-YL)-5-[(SULFOOXY)
HETNAM 2 MK7 AMINO]PIPERIDINE-2-CARBOXAMIDE
HETNAM JJT (2~{S})-5-AZANYLIDENE-2-(PIPERIDIN-4-YLCARBAMOYL)
HETNAM 2 JJT PIPERIDINE-1-CARBOXYLIC ACID
HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL
HETSYN MK7 MK-7655, BOUND FORM
FORMUL 2 SO4 2(O4 S 2-)
FORMUL 4 GOL C3 H8 O3
FORMUL 5 EOH C2 H6 O
FORMUL 6 MK7 C12 H22 N4 O6 S
FORMUL 7 JJT C12 H20 N4 O3
FORMUL 8 HOH *373(H2 O)
HELIX 1 AA1 PRO A 32 GLY A 41 1 10
HELIX 2 AA2 SER A 71 GLN A 85 1 15
HELIX 3 AA3 GLY A 98 LEU A 102 5 5
HELIX 4 AA4 ILE A 108 LEU A 113 5 6
HELIX 5 AA5 VAL A 119 TYR A 129 1 11
HELIX 6 AA6 ASP A 131 LEU A 142 1 12
HELIX 7 AA7 GLY A 143 ILE A 155 1 13
HELIX 8 AA8 LEU A 167 SER A 171 5 5
HELIX 9 AA9 SER A 182 LEU A 195 1 14
HELIX 10 AB1 ALA A 200 GLY A 213 1 14
HELIX 11 AB2 ARG A 220 VAL A 225 5 6
HELIX 12 AB3 SER A 275 LEU A 290 1 16
SHEET 1 AA1 5 THR A 56 TYR A 60 0
SHEET 2 AA1 5 SER A 43 ASP A 50 -1 N VAL A 46 O TYR A 60
SHEET 3 AA1 5 ILE A 259 ARG A 266 -1 O ARG A 266 N SER A 43
SHEET 4 AA1 5 ALA A 244 TRP A 251 -1 N VAL A 250 O ILE A 259
SHEET 5 AA1 5 ALA A 230 THR A 237 -1 N ALA A 230 O TRP A 251
SHEET 1 AA2 2 PHE A 66 PRO A 67 0
SHEET 2 AA2 2 THR A 180 SER A 181 -1 O SER A 181 N PHE A 66
SHEET 1 AA3 2 PRO A 94 ILE A 95 0
SHEET 2 AA3 2 MET A 117 THR A 118 -1 O MET A 117 N ILE A 95
SSBOND 1 CYS A 69 CYS A 238 1555 1555 2.07
LINK OG SER A 70 C8 AMK7 A 305 1555 1555 1.36
LINK OG SER A 70 C05BJJT A 306 1555 1555 1.35
CISPEP 1 GLU A 166 LEU A 167 0 6.47
SITE 1 AC1 6 SER A 275 GLU A 276 ALA A 277 EOH A 304
SITE 2 AC1 6 HOH A 511 HOH A 576
SITE 1 AC2 11 SER A 70 SER A 130 THR A 216 LYS A 234
SITE 2 AC2 11 THR A 235 GLY A 236 THR A 237 MK7 A 305
SITE 3 AC2 11 JJT A 306 HOH A 439 HOH A 552
SITE 1 AC3 8 GLN A 205 VAL A 208 LYS A 212 ALA A 230
SITE 2 AC3 8 TRP A 251 HOH A 417 HOH A 427 HOH A 489
SITE 1 AC4 3 TYR A 274 SO4 A 301 HOH A 727
SITE 1 AC5 18 SER A 70 LYS A 73 TRP A 105 SER A 130
SITE 2 AC5 18 ASN A 132 THR A 216 LYS A 234 THR A 235
SITE 3 AC5 18 GLY A 236 THR A 237 SO4 A 302 JJT A 306
SITE 4 AC5 18 HOH A 412 HOH A 439 HOH A 476 HOH A 536
SITE 5 AC5 18 HOH A 543 HOH A 552
SITE 1 AC6 12 SER A 70 LYS A 73 TRP A 105 SER A 130
SITE 2 AC6 12 ASN A 132 GLY A 236 THR A 237 SO4 A 302
SITE 3 AC6 12 MK7 A 305 HOH A 412 HOH A 476 HOH A 536
CRYST1 60.128 78.717 55.806 90.00 90.00 90.00 P 21 21 2 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.016631 0.000000 0.000000 0.00000
SCALE2 0.000000 0.012704 0.000000 0.00000
SCALE3 0.000000 0.000000 0.017919 0.00000