HEADER ANTIMICROBIAL PROTEIN 05-MAR-19 6QWC TITLE CRYSTAL STRUCTURE OF KPC-4 COMPLEXED WITH RELEBACTAM (1 HOUR SOAK) COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.5.2.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 GENE: BLAKPC-4, BLAKPC-2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) KEYWDS INHIBITOR, RELEBACTAM, DIAZABICYCLOOCTANE, ANTIBIOTIC RESISTANCE., KEYWDS 2 ANTIMICROBIAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.L.TOOKE,P.HINCHLIFFE,J.SPENCER REVDAT 4 13-NOV-24 6QWC 1 REMARK REVDAT 3 24-JAN-24 6QWC 1 REMARK REVDAT 2 02-OCT-19 6QWC 1 JRNL REVDAT 1 21-AUG-19 6QWC 0 JRNL AUTH C.L.TOOKE,P.HINCHLIFFE,P.A.LANG,A.J.MULHOLLAND,J.BREM, JRNL AUTH 2 C.J.SCHOFIELD,J.SPENCER JRNL TITL MOLECULAR BASIS OF CLASS A BETA-LACTAMASE INHIBITION BY JRNL TITL 2 RELEBACTAM. JRNL REF ANTIMICROB.AGENTS CHEMOTHER. V. 63 2019 JRNL REFN ESSN 1098-6596 JRNL PMID 31383664 JRNL DOI 10.1128/AAC.00564-19 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 65971 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.142 REMARK 3 R VALUE (WORKING SET) : 0.140 REMARK 3 FREE R VALUE : 0.164 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 3315 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.9193 - 3.7489 1.00 2802 160 0.1679 0.2007 REMARK 3 2 3.7489 - 2.9759 1.00 2693 157 0.1396 0.1608 REMARK 3 3 2.9759 - 2.5998 1.00 2667 144 0.1236 0.1430 REMARK 3 4 2.5998 - 2.3621 1.00 2625 146 0.1150 0.1099 REMARK 3 5 2.3621 - 2.1928 1.00 2613 145 0.1109 0.1085 REMARK 3 6 2.1928 - 2.0636 1.00 2638 128 0.1121 0.1444 REMARK 3 7 2.0636 - 1.9602 1.00 2610 160 0.1143 0.1353 REMARK 3 8 1.9602 - 1.8749 1.00 2594 138 0.1191 0.1607 REMARK 3 9 1.8749 - 1.8027 1.00 2613 129 0.1255 0.1534 REMARK 3 10 1.8027 - 1.7405 1.00 2612 140 0.1281 0.1466 REMARK 3 11 1.7405 - 1.6861 1.00 2573 142 0.1309 0.1616 REMARK 3 12 1.6861 - 1.6379 1.00 2629 103 0.1284 0.1749 REMARK 3 13 1.6379 - 1.5948 1.00 2613 134 0.1319 0.1622 REMARK 3 14 1.5948 - 1.5559 1.00 2598 127 0.1375 0.1689 REMARK 3 15 1.5559 - 1.5205 1.00 2566 155 0.1459 0.1724 REMARK 3 16 1.5205 - 1.4881 1.00 2612 123 0.1513 0.2006 REMARK 3 17 1.4881 - 1.4584 1.00 2551 141 0.1628 0.2019 REMARK 3 18 1.4584 - 1.4308 1.00 2595 127 0.1687 0.2082 REMARK 3 19 1.4308 - 1.4053 1.00 2569 147 0.1792 0.1996 REMARK 3 20 1.4053 - 1.3815 1.00 2584 130 0.1861 0.2245 REMARK 3 21 1.3815 - 1.3592 1.00 2528 150 0.2201 0.2479 REMARK 3 22 1.3592 - 1.3383 1.00 2593 127 0.2222 0.2810 REMARK 3 23 1.3383 - 1.3186 1.00 2604 127 0.2157 0.2664 REMARK 3 24 1.3186 - 1.3000 1.00 2574 135 0.2249 0.2655 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.020 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2281 REMARK 3 ANGLE : 0.993 3135 REMARK 3 CHIRALITY : 0.075 341 REMARK 3 PLANARITY : 0.007 411 REMARK 3 DIHEDRAL : 15.308 820 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QWC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1292101007. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.78 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75907 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 55.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.32 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5UL8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M AMMONIUM SULPHATE, 5% ETHANOL, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 30.09650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.48750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.09650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.48750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 306 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 495 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 4 REMARK 465 GLY A 5 REMARK 465 SER A 6 REMARK 465 SER A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 HIS A 11 REMARK 465 HIS A 12 REMARK 465 HIS A 13 REMARK 465 SER A 14 REMARK 465 SER A 15 REMARK 465 GLY A 16 REMARK 465 LEU A 17 REMARK 465 VAL A 18 REMARK 465 PRO A 19 REMARK 465 ARG A 20 REMARK 465 GLY A 21 REMARK 465 SER A 22 REMARK 465 HIS A 23 REMARK 465 MET A 24 REMARK 465 GLN A 295 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE22 GLN A 191 O HOH A 404 1.52 REMARK 500 O HOH A 401 O HOH A 611 1.84 REMARK 500 O HOH A 596 O HOH A 605 1.86 REMARK 500 O GLY A 294 O HOH A 401 1.90 REMARK 500 O HOH A 602 O HOH A 633 2.02 REMARK 500 O HOH A 412 O HOH A 604 2.04 REMARK 500 O HOH A 437 O HOH A 598 2.04 REMARK 500 O HOH A 514 O HOH A 597 2.06 REMARK 500 O1 SO4 A 301 O HOH A 402 2.08 REMARK 500 O HOH A 561 O HOH A 606 2.09 REMARK 500 O HOH A 530 O HOH A 590 2.11 REMARK 500 O HOH A 570 O HOH A 638 2.12 REMARK 500 O HOH A 587 O HOH A 606 2.13 REMARK 500 O HOH A 536 O HOH A 629 2.15 REMARK 500 O HOH A 490 O HOH A 611 2.15 REMARK 500 N LEU A 25 O HOH A 403 2.18 REMARK 500 O HOH A 457 O HOH A 638 2.19 REMARK 500 O HOH A 610 O HOH A 620 2.19 REMARK 500 O HOH A 591 O HOH A 644 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 526 O HOH A 574 4556 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 69 -142.68 53.19 REMARK 500 ARG A 220 -124.98 -115.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 654 DISTANCE = 5.98 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MK7 A 310 DBREF 6QWC A 25 295 UNP B1PL86 B1PL86_KLEPN 25 293 SEQADV 6QWC MET A 4 UNP B1PL86 INITIATING METHIONINE SEQADV 6QWC GLY A 5 UNP B1PL86 EXPRESSION TAG SEQADV 6QWC SER A 6 UNP B1PL86 EXPRESSION TAG SEQADV 6QWC SER A 7 UNP B1PL86 EXPRESSION TAG SEQADV 6QWC HIS A 8 UNP B1PL86 EXPRESSION TAG SEQADV 6QWC HIS A 9 UNP B1PL86 EXPRESSION TAG SEQADV 6QWC HIS A 10 UNP B1PL86 EXPRESSION TAG SEQADV 6QWC HIS A 11 UNP B1PL86 EXPRESSION TAG SEQADV 6QWC HIS A 12 UNP B1PL86 EXPRESSION TAG SEQADV 6QWC HIS A 13 UNP B1PL86 EXPRESSION TAG SEQADV 6QWC SER A 14 UNP B1PL86 EXPRESSION TAG SEQADV 6QWC SER A 15 UNP B1PL86 EXPRESSION TAG SEQADV 6QWC GLY A 16 UNP B1PL86 EXPRESSION TAG SEQADV 6QWC LEU A 17 UNP B1PL86 EXPRESSION TAG SEQADV 6QWC VAL A 18 UNP B1PL86 EXPRESSION TAG SEQADV 6QWC PRO A 19 UNP B1PL86 EXPRESSION TAG SEQADV 6QWC ARG A 20 UNP B1PL86 EXPRESSION TAG SEQADV 6QWC GLY A 21 UNP B1PL86 EXPRESSION TAG SEQADV 6QWC SER A 22 UNP B1PL86 EXPRESSION TAG SEQADV 6QWC HIS A 23 UNP B1PL86 EXPRESSION TAG SEQADV 6QWC MET A 24 UNP B1PL86 EXPRESSION TAG SEQRES 1 A 290 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 290 LEU VAL PRO ARG GLY SER HIS MET LEU THR ASN LEU VAL SEQRES 3 A 290 ALA GLU PRO PHE ALA LYS LEU GLU GLN ASP PHE GLY GLY SEQRES 4 A 290 SER ILE GLY VAL TYR ALA MET ASP THR GLY SER GLY ALA SEQRES 5 A 290 THR VAL SER TYR ARG ALA GLU GLU ARG PHE PRO LEU CYS SEQRES 6 A 290 SER SER PHE LYS GLY PHE LEU ALA ALA ALA VAL LEU ALA SEQRES 7 A 290 ARG SER GLN GLN GLN ALA GLY LEU LEU ASP THR PRO ILE SEQRES 8 A 290 ARG TYR GLY LYS ASN ALA LEU VAL ARG TRP SER PRO ILE SEQRES 9 A 290 SER GLU LYS TYR LEU THR THR GLY MET THR VAL ALA GLU SEQRES 10 A 290 LEU SER ALA ALA ALA VAL GLN TYR SER ASP ASN ALA ALA SEQRES 11 A 290 ALA ASN LEU LEU LEU LYS GLU LEU GLY GLY PRO ALA GLY SEQRES 12 A 290 LEU THR ALA PHE MET ARG SER ILE GLY ASP THR THR PHE SEQRES 13 A 290 ARG LEU ASP ARG TRP GLU LEU GLU LEU ASN SER ALA ILE SEQRES 14 A 290 PRO GLY ASP ALA ARG ASP THR SER SER PRO ARG ALA VAL SEQRES 15 A 290 THR GLU SER LEU GLN LYS LEU THR LEU GLY SER ALA LEU SEQRES 16 A 290 ALA ALA PRO GLN ARG GLN GLN PHE VAL ASP TRP LEU LYS SEQRES 17 A 290 GLY ASN THR THR GLY ASN HIS ARG ILE ARG ALA ALA VAL SEQRES 18 A 290 PRO ALA ASP TRP ALA VAL GLY ASP LYS THR GLY THR CYS SEQRES 19 A 290 GLY GLY TYR GLY THR ALA ASN ASP TYR ALA VAL VAL TRP SEQRES 20 A 290 PRO THR GLY ARG ALA PRO ILE VAL LEU ALA VAL TYR THR SEQRES 21 A 290 ARG ALA PRO ASN LYS ASP ASP LYS HIS SER GLU ALA VAL SEQRES 22 A 290 ILE ALA ALA ALA ALA ARG LEU ALA LEU GLU GLY LEU GLY SEQRES 23 A 290 VAL ASN GLY GLN HET SO4 A 301 5 HET SO4 A 302 5 HET SO4 A 303 5 HET SO4 A 304 5 HET SO4 A 305 5 HET SO4 A 306 5 HET SO4 A 307 5 HET SO4 A 308 5 HET GOL A 309 12 HET MK7 A 310 43 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM MK7 (2S,5R)-1-FORMYL-N-(PIPERIDIN-4-YL)-5-[(SULFOOXY) HETNAM 2 MK7 AMINO]PIPERIDINE-2-CARBOXAMIDE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN MK7 MK-7655, BOUND FORM FORMUL 2 SO4 8(O4 S 2-) FORMUL 10 GOL C3 H8 O3 FORMUL 11 MK7 C12 H22 N4 O6 S FORMUL 12 HOH *254(H2 O) HELIX 1 AA1 PRO A 32 GLY A 41 1 10 HELIX 2 AA2 SER A 71 GLN A 85 1 15 HELIX 3 AA3 GLY A 98 LEU A 102 5 5 HELIX 4 AA4 ILE A 108 LEU A 113 5 6 HELIX 5 AA5 VAL A 119 TYR A 129 1 11 HELIX 6 AA6 ASP A 131 LEU A 142 1 12 HELIX 7 AA7 GLY A 143 ILE A 155 1 13 HELIX 8 AA8 LEU A 167 SER A 171 5 5 HELIX 9 AA9 SER A 182 LEU A 195 1 14 HELIX 10 AB1 ALA A 200 GLY A 213 1 14 HELIX 11 AB2 ARG A 220 VAL A 225 5 6 HELIX 12 AB3 SER A 275 LEU A 290 1 16 SHEET 1 AA1 5 THR A 56 TYR A 60 0 SHEET 2 AA1 5 SER A 43 ASP A 50 -1 N VAL A 46 O TYR A 60 SHEET 3 AA1 5 ILE A 259 ARG A 266 -1 O TYR A 264 N GLY A 45 SHEET 4 AA1 5 ALA A 244 TRP A 251 -1 N VAL A 250 O ILE A 259 SHEET 5 AA1 5 ALA A 230 THR A 237 -1 N ALA A 230 O TRP A 251 SHEET 1 AA2 2 PHE A 66 PRO A 67 0 SHEET 2 AA2 2 THR A 180 SER A 181 -1 O SER A 181 N PHE A 66 SHEET 1 AA3 2 PRO A 94 ILE A 95 0 SHEET 2 AA3 2 MET A 117 THR A 118 -1 O MET A 117 N ILE A 95 SSBOND 1 CYS A 69 CYS A 238 1555 1555 2.06 LINK OG SER A 70 C8 AMK7 A 310 1555 1555 1.38 CISPEP 1 GLU A 166 LEU A 167 0 8.67 SITE 1 AC1 6 SER A 275 GLU A 276 ALA A 277 HOH A 402 SITE 2 AC1 6 HOH A 466 HOH A 507 SITE 1 AC2 5 GLY A 239 LYS A 273 HIS A 274 HOH A 408 SITE 2 AC2 5 HOH A 411 SITE 1 AC3 4 GLN A 86 ARG A 104 TRP A 105 HOH A 446 SITE 1 AC4 7 GLN A 86 GLN A 87 ALA A 88 ARG A 104 SITE 2 AC4 7 TRP A 105 MK7 A 310 HOH A 414 SITE 1 AC5 5 ASP A 92 ARG A 178 HOH A 459 HOH A 509 SITE 2 AC5 5 HOH A 565 SITE 1 AC6 5 ILE A 173 TYR A 241 LYS A 270 HOH A 416 SITE 2 AC6 5 HOH A 484 SITE 1 AC7 6 THR A 26 ARG A 184 PRO A 226 ALA A 227 SITE 2 AC7 6 HOH A 405 HOH A 514 SITE 1 AC8 8 ILE A 108 TYR A 112 MET A 117 GLU A 121 SITE 2 AC8 8 ALA A 146 ASP A 163 HOH A 410 HOH A 550 SITE 1 AC9 5 GLN A 205 LYS A 212 ALA A 230 TRP A 251 SITE 2 AC9 5 HOH A 485 SITE 1 AD1 18 CYS A 69 SER A 70 LYS A 73 ALA A 88 SITE 2 AD1 18 TRP A 105 SER A 130 ASN A 132 THR A 216 SITE 3 AD1 18 LYS A 234 THR A 235 GLY A 236 THR A 237 SITE 4 AD1 18 CYS A 238 SO4 A 304 HOH A 417 HOH A 438 SITE 5 AD1 18 HOH A 486 HOH A 531 CRYST1 60.193 78.975 55.743 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016613 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012662 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017939 0.00000