HEADER HYDROLASE 05-MAR-19 6QWI TITLE STRUCTURE OF BETA-GLUCOSIDASE A FROM PAENIBACILLUS POLYMYXA COMPLEXED TITLE 2 WITH MULTIVALENT INHIBITORS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-GLUCOSIDASE A; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BGA,AMYGDALASE,BETA-D-GLUCOSIDE GLUCOHYDROLASE,CELLOBIASE, COMPND 5 GENTIOBIASE; COMPND 6 EC: 3.2.1.21; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PAENIBACILLUS POLYMYXA; SOURCE 3 ORGANISM_TAXID: 1406; SOURCE 4 GENE: BGLA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PQE-80L KEYWDS HYDROLASE, BETA-GLUCOSIDASE, GLYCOSIDASE, CARBOHYDRATE, CARBOHYDRATE KEYWDS 2 METABOLISM, POLISACCHARIDE DEGRADATION, COMPLEX, INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR E.JIMENEZ-ORTEGA,J.SANZ-APARICIO REVDAT 2 24-JAN-24 6QWI 1 REMARK REVDAT 1 03-JUL-19 6QWI 0 JRNL AUTH M.MARTINEZ-BAILEN,E.JIMENEZ-ORTEGA,A.T.CARMONA,I.ROBINA, JRNL AUTH 2 J.SANZ-APARICIO,D.TALENS-PERALES,J.POLAINA,C.MATASSINI, JRNL AUTH 3 F.CARDONA,A.J.MORENO-VARGAS JRNL TITL STRUCTURAL BASIS OF THE INHIBITION OF GH1 BETA-GLUCOSIDASES JRNL TITL 2 BY MULTIVALENT PYRROLIDINE IMINOSUGARS. JRNL REF BIOORG.CHEM. V. 89 03026 2019 JRNL REFN ISSN 0045-2068 JRNL PMID 31226649 JRNL DOI 10.1016/J.BIOORG.2019.103026 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 75.6 REMARK 3 NUMBER OF REFLECTIONS : 25865 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1405 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.92 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1951 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.33 REMARK 3 BIN R VALUE (WORKING SET) : 0.2930 REMARK 3 BIN FREE R VALUE SET COUNT : 99 REMARK 3 BIN FREE R VALUE : 0.3280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7294 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 147 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.01 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.42000 REMARK 3 B22 (A**2) : -0.42000 REMARK 3 B33 (A**2) : 0.85000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.396 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.251 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.537 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7568 ; 0.006 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 6568 ; 0.003 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10292 ; 1.381 ; 1.645 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15190 ; 1.259 ; 1.580 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 894 ; 6.426 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 458 ;32.087 ;22.227 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1160 ;16.423 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 50 ;21.540 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 926 ; 0.058 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8642 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1780 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3582 ; 2.486 ; 4.616 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3581 ; 2.472 ; 4.616 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4473 ; 3.911 ; 6.923 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4474 ; 3.911 ; 6.924 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3986 ; 2.622 ; 4.833 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3987 ; 2.622 ; 4.833 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5819 ; 4.292 ; 7.152 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 8712 ; 6.566 ;52.883 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 8708 ; 6.562 ;52.889 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 448 B 1 448 15452 0.09 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6QWI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1292100899. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979260 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL-CUT, CRYOCOOLED REMARK 200 OPTICS : KB FOCUSING MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 7.0.057 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27295 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 48.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 76.4 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.14100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.1 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : 0.68900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 7.0.057 REMARK 200 STARTING MODEL: 1E4I REMARK 200 REMARK 200 REMARK: PRISMATIC CRYSTALS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13% (V/V) PEG 3350, 0.2M SODIUM REMARK 280 NITRATE, 3% 2-METHYL-2,4-PENTANEDIOL (MPD) AND 0.1 M BISTRIS REMARK 280 PROPANE, PH 7.5 AND 0.56 MM 6-CYCLOHEXYLHEXYL BETA-D-MALTOSIDE. REMARK 280 CRYOPROTECTANT MOTHER LIQUOR SUPPLEMENTED WITH 25% GLYCEROL., REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 73.04800 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 73.04800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 73.04800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 73.04800 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 73.04800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 73.04800 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 73.04800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 73.04800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 146.09600 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 73.04800 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 -73.04800 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 73.04800 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 73.04800 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 705 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 54 -123.41 47.93 REMARK 500 TRP A 122 3.21 86.91 REMARK 500 ASP A 123 50.21 -90.03 REMARK 500 ALA A 171 -71.23 -90.27 REMARK 500 SER A 247 -71.90 -115.16 REMARK 500 TYR A 296 -52.93 -135.77 REMARK 500 ALA A 307 60.49 -105.36 REMARK 500 TRP A 406 -118.63 51.43 REMARK 500 ALA B 54 -122.86 46.33 REMARK 500 TRP B 122 5.69 90.05 REMARK 500 ASP B 123 20.79 -72.92 REMARK 500 ALA B 171 -71.05 -89.01 REMARK 500 SER B 247 -70.90 -115.87 REMARK 500 TYR B 296 -54.50 -136.14 REMARK 500 ALA B 307 62.16 -103.63 REMARK 500 GLN B 367 59.86 -99.29 REMARK 500 TRP B 406 -118.58 50.58 REMARK 500 ARG B 447 -138.21 -160.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 642 DISTANCE = 7.05 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JJW A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JJW B 501 DBREF 6QWI A 1 448 UNP P22073 BGLA_PAEPO 1 448 DBREF 6QWI B 1 448 UNP P22073 BGLA_PAEPO 1 448 SEQADV 6QWI LYS A 96 UNP P22073 GLU 96 CONFLICT SEQADV 6QWI ALA A 385 UNP P22073 THR 385 CONFLICT SEQADV 6QWI SER A 411 UNP P22073 ASN 411 CONFLICT SEQADV 6QWI ILE A 416 UNP P22073 MET 416 CONFLICT SEQADV 6QWI LYS A 437 UNP P22073 ASN 437 CONFLICT SEQADV 6QWI GLY A 440 UNP P22073 SER 440 CONFLICT SEQADV 6QWI LYS B 96 UNP P22073 GLU 96 CONFLICT SEQADV 6QWI ALA B 385 UNP P22073 THR 385 CONFLICT SEQADV 6QWI SER B 411 UNP P22073 ASN 411 CONFLICT SEQADV 6QWI ILE B 416 UNP P22073 MET 416 CONFLICT SEQADV 6QWI LYS B 437 UNP P22073 ASN 437 CONFLICT SEQADV 6QWI GLY B 440 UNP P22073 SER 440 CONFLICT SEQRES 1 A 448 MET THR ILE PHE GLN PHE PRO GLN ASP PHE MET TRP GLY SEQRES 2 A 448 THR ALA THR ALA ALA TYR GLN ILE GLU GLY ALA TYR GLN SEQRES 3 A 448 GLU ASP GLY ARG GLY LEU SER ILE TRP ASP THR PHE ALA SEQRES 4 A 448 HIS THR PRO GLY LYS VAL PHE ASN GLY ASP ASN GLY ASN SEQRES 5 A 448 VAL ALA CYS ASP SER TYR HIS ARG TYR GLU GLU ASP ILE SEQRES 6 A 448 ARG LEU MET LYS GLU LEU GLY ILE ARG THR TYR ARG PHE SEQRES 7 A 448 SER VAL SER TRP PRO ARG ILE PHE PRO ASN GLY ASP GLY SEQRES 8 A 448 GLU VAL ASN GLN LYS GLY LEU ASP TYR TYR HIS ARG VAL SEQRES 9 A 448 VAL ASP LEU LEU ASN ASP ASN GLY ILE GLU PRO PHE CYS SEQRES 10 A 448 THR LEU TYR HIS TRP ASP LEU PRO GLN ALA LEU GLN ASP SEQRES 11 A 448 ALA GLY GLY TRP GLY ASN ARG ARG THR ILE GLN ALA PHE SEQRES 12 A 448 VAL GLN PHE ALA GLU THR MET PHE ARG GLU PHE HIS GLY SEQRES 13 A 448 LYS ILE GLN HIS TRP LEU THR PHE ASN GLU PRO TRP CYS SEQRES 14 A 448 ILE ALA PHE LEU SER ASN MET LEU GLY VAL HIS ALA PRO SEQRES 15 A 448 GLY LEU THR ASN LEU GLN THR ALA ILE ASP VAL GLY HIS SEQRES 16 A 448 HIS LEU LEU VAL ALA HIS GLY LEU SER VAL ARG ARG PHE SEQRES 17 A 448 ARG GLU LEU GLY THR SER GLY GLN ILE GLY ILE ALA PRO SEQRES 18 A 448 ASN VAL SER TRP ALA VAL PRO TYR SER THR SER GLU GLU SEQRES 19 A 448 ASP LYS ALA ALA CYS ALA ARG THR ILE SER LEU HIS SER SEQRES 20 A 448 ASP TRP PHE LEU GLN PRO ILE TYR GLN GLY SER TYR PRO SEQRES 21 A 448 GLN PHE LEU VAL ASP TRP PHE ALA GLU GLN GLY ALA THR SEQRES 22 A 448 VAL PRO ILE GLN ASP GLY ASP MET ASP ILE ILE GLY GLU SEQRES 23 A 448 PRO ILE ASP MET ILE GLY ILE ASN TYR TYR SER MET SER SEQRES 24 A 448 VAL ASN ARG PHE ASN PRO GLU ALA GLY PHE LEU GLN SER SEQRES 25 A 448 GLU GLU ILE ASN MET GLY LEU PRO VAL THR ASP ILE GLY SEQRES 26 A 448 TRP PRO VAL GLU SER ARG GLY LEU TYR GLU VAL LEU HIS SEQRES 27 A 448 TYR LEU GLN LYS TYR GLY ASN ILE ASP ILE TYR ILE THR SEQRES 28 A 448 GLU ASN GLY ALA CYS ILE ASN ASP GLU VAL VAL ASN GLY SEQRES 29 A 448 LYS VAL GLN ASP ASP ARG ARG ILE SER TYR MET GLN GLN SEQRES 30 A 448 HIS LEU VAL GLN VAL HIS ARG ALA ILE HIS ASP GLY LEU SEQRES 31 A 448 HIS VAL LYS GLY TYR MET ALA TRP SER LEU LEU ASP ASN SEQRES 32 A 448 PHE GLU TRP ALA GLU GLY TYR SER MET ARG PHE GLY ILE SEQRES 33 A 448 ILE HIS VAL ASP PHE ARG THR GLN VAL ARG THR PRO LYS SEQRES 34 A 448 GLU SER TYR TYR TRP TYR ARG LYS VAL VAL GLY ASN ASN SEQRES 35 A 448 TRP LEU GLU THR ARG ARG SEQRES 1 B 448 MET THR ILE PHE GLN PHE PRO GLN ASP PHE MET TRP GLY SEQRES 2 B 448 THR ALA THR ALA ALA TYR GLN ILE GLU GLY ALA TYR GLN SEQRES 3 B 448 GLU ASP GLY ARG GLY LEU SER ILE TRP ASP THR PHE ALA SEQRES 4 B 448 HIS THR PRO GLY LYS VAL PHE ASN GLY ASP ASN GLY ASN SEQRES 5 B 448 VAL ALA CYS ASP SER TYR HIS ARG TYR GLU GLU ASP ILE SEQRES 6 B 448 ARG LEU MET LYS GLU LEU GLY ILE ARG THR TYR ARG PHE SEQRES 7 B 448 SER VAL SER TRP PRO ARG ILE PHE PRO ASN GLY ASP GLY SEQRES 8 B 448 GLU VAL ASN GLN LYS GLY LEU ASP TYR TYR HIS ARG VAL SEQRES 9 B 448 VAL ASP LEU LEU ASN ASP ASN GLY ILE GLU PRO PHE CYS SEQRES 10 B 448 THR LEU TYR HIS TRP ASP LEU PRO GLN ALA LEU GLN ASP SEQRES 11 B 448 ALA GLY GLY TRP GLY ASN ARG ARG THR ILE GLN ALA PHE SEQRES 12 B 448 VAL GLN PHE ALA GLU THR MET PHE ARG GLU PHE HIS GLY SEQRES 13 B 448 LYS ILE GLN HIS TRP LEU THR PHE ASN GLU PRO TRP CYS SEQRES 14 B 448 ILE ALA PHE LEU SER ASN MET LEU GLY VAL HIS ALA PRO SEQRES 15 B 448 GLY LEU THR ASN LEU GLN THR ALA ILE ASP VAL GLY HIS SEQRES 16 B 448 HIS LEU LEU VAL ALA HIS GLY LEU SER VAL ARG ARG PHE SEQRES 17 B 448 ARG GLU LEU GLY THR SER GLY GLN ILE GLY ILE ALA PRO SEQRES 18 B 448 ASN VAL SER TRP ALA VAL PRO TYR SER THR SER GLU GLU SEQRES 19 B 448 ASP LYS ALA ALA CYS ALA ARG THR ILE SER LEU HIS SER SEQRES 20 B 448 ASP TRP PHE LEU GLN PRO ILE TYR GLN GLY SER TYR PRO SEQRES 21 B 448 GLN PHE LEU VAL ASP TRP PHE ALA GLU GLN GLY ALA THR SEQRES 22 B 448 VAL PRO ILE GLN ASP GLY ASP MET ASP ILE ILE GLY GLU SEQRES 23 B 448 PRO ILE ASP MET ILE GLY ILE ASN TYR TYR SER MET SER SEQRES 24 B 448 VAL ASN ARG PHE ASN PRO GLU ALA GLY PHE LEU GLN SER SEQRES 25 B 448 GLU GLU ILE ASN MET GLY LEU PRO VAL THR ASP ILE GLY SEQRES 26 B 448 TRP PRO VAL GLU SER ARG GLY LEU TYR GLU VAL LEU HIS SEQRES 27 B 448 TYR LEU GLN LYS TYR GLY ASN ILE ASP ILE TYR ILE THR SEQRES 28 B 448 GLU ASN GLY ALA CYS ILE ASN ASP GLU VAL VAL ASN GLY SEQRES 29 B 448 LYS VAL GLN ASP ASP ARG ARG ILE SER TYR MET GLN GLN SEQRES 30 B 448 HIS LEU VAL GLN VAL HIS ARG ALA ILE HIS ASP GLY LEU SEQRES 31 B 448 HIS VAL LYS GLY TYR MET ALA TRP SER LEU LEU ASP ASN SEQRES 32 B 448 PHE GLU TRP ALA GLU GLY TYR SER MET ARG PHE GLY ILE SEQRES 33 B 448 ILE HIS VAL ASP PHE ARG THR GLN VAL ARG THR PRO LYS SEQRES 34 B 448 GLU SER TYR TYR TRP TYR ARG LYS VAL VAL GLY ASN ASN SEQRES 35 B 448 TRP LEU GLU THR ARG ARG HET JJW A 501 25 HET JJW B 501 25 HETNAM JJW (2~{S},3~{S},4~{R})-2-[[4-[4-(2-ETHOXYETHOXY)PHENYL]-1, HETNAM 2 JJW 2,3-TRIAZOL-1-YL]METHYL]PYRROLIDINE-3,4-DIOL FORMUL 3 JJW 2(C17 H24 N4 O4) FORMUL 5 HOH *147(H2 O) HELIX 1 AA1 ALA A 17 GLU A 22 1 6 HELIX 2 AA2 GLN A 26 ARG A 30 5 5 HELIX 3 AA3 SER A 33 HIS A 40 1 8 HELIX 4 AA4 VAL A 45 ASP A 49 5 5 HELIX 5 AA5 ASP A 56 GLY A 72 1 17 HELIX 6 AA6 SER A 81 PHE A 86 1 6 HELIX 7 AA7 ASN A 94 ASN A 111 1 18 HELIX 8 AA8 PRO A 125 ALA A 131 1 7 HELIX 9 AA9 GLY A 132 ASN A 136 5 5 HELIX 10 AB1 ARG A 137 PHE A 154 1 18 HELIX 11 AB2 GLU A 166 MET A 176 1 11 HELIX 12 AB3 ASN A 186 LEU A 211 1 26 HELIX 13 AB4 SER A 232 SER A 247 1 16 HELIX 14 AB5 SER A 247 GLY A 257 1 11 HELIX 15 AB6 PRO A 260 GLU A 269 1 10 HELIX 16 AB7 GLY A 279 GLY A 285 1 7 HELIX 17 AB8 SER A 330 LEU A 340 1 11 HELIX 18 AB9 GLN A 341 GLY A 344 5 4 HELIX 19 AC1 ASP A 368 ASP A 388 1 21 HELIX 20 AC2 GLU A 405 GLY A 409 5 5 HELIX 21 AC3 LYS A 429 GLY A 440 1 12 HELIX 22 AC4 ALA B 17 GLU B 22 1 6 HELIX 23 AC5 GLN B 26 ARG B 30 5 5 HELIX 24 AC6 SER B 33 HIS B 40 1 8 HELIX 25 AC7 VAL B 45 ASP B 49 5 5 HELIX 26 AC8 ASP B 56 GLY B 72 1 17 HELIX 27 AC9 SER B 81 PHE B 86 1 6 HELIX 28 AD1 ASN B 94 ASN B 111 1 18 HELIX 29 AD2 PRO B 125 ALA B 131 1 7 HELIX 30 AD3 GLY B 132 ASN B 136 5 5 HELIX 31 AD4 ARG B 137 PHE B 154 1 18 HELIX 32 AD5 GLU B 166 MET B 176 1 11 HELIX 33 AD6 ASN B 186 LEU B 211 1 26 HELIX 34 AD7 SER B 232 SER B 247 1 16 HELIX 35 AD8 SER B 247 GLY B 257 1 11 HELIX 36 AD9 PRO B 260 GLU B 269 1 10 HELIX 37 AE1 GLY B 279 GLY B 285 1 7 HELIX 38 AE2 SER B 330 LEU B 340 1 11 HELIX 39 AE3 GLN B 341 GLY B 344 5 4 HELIX 40 AE4 ASP B 368 HIS B 387 1 20 HELIX 41 AE5 GLU B 405 GLY B 409 5 5 HELIX 42 AE6 LYS B 429 ASN B 442 1 14 SHEET 1 AA1 2 THR A 2 GLN A 5 0 SHEET 2 AA1 2 TRP A 443 THR A 446 -1 O LEU A 444 N PHE A 4 SHEET 1 AA2 9 MET A 11 ALA A 15 0 SHEET 2 AA2 9 THR A 75 SER A 79 1 O THR A 75 N TRP A 12 SHEET 3 AA2 9 GLU A 114 TYR A 120 1 O THR A 118 N PHE A 78 SHEET 4 AA2 9 HIS A 160 ASN A 165 1 O LEU A 162 N LEU A 119 SHEET 5 AA2 9 GLN A 216 ALA A 220 1 O GLY A 218 N THR A 163 SHEET 6 AA2 9 MET A 290 ASN A 294 1 O GLY A 292 N ILE A 219 SHEET 7 AA2 9 ASP A 347 GLU A 352 1 O TYR A 349 N ILE A 293 SHEET 8 AA2 9 VAL A 392 TRP A 398 1 O LYS A 393 N ILE A 348 SHEET 9 AA2 9 MET A 11 ALA A 15 1 N MET A 11 O LYS A 393 SHEET 1 AA3 3 ALA A 226 PRO A 228 0 SHEET 2 AA3 3 SER A 299 PHE A 303 1 O ASN A 301 N VAL A 227 SHEET 3 AA3 3 SER A 312 ILE A 315 -1 O ILE A 315 N VAL A 300 SHEET 1 AA4 2 ILE A 417 VAL A 419 0 SHEET 2 AA4 2 ARG A 426 PRO A 428 -1 O THR A 427 N HIS A 418 SHEET 1 AA5 2 ILE B 3 GLN B 5 0 SHEET 2 AA5 2 TRP B 443 GLU B 445 -1 O LEU B 444 N PHE B 4 SHEET 1 AA6 9 MET B 11 ALA B 15 0 SHEET 2 AA6 9 THR B 75 SER B 79 1 O THR B 75 N TRP B 12 SHEET 3 AA6 9 GLU B 114 TYR B 120 1 O PHE B 116 N TYR B 76 SHEET 4 AA6 9 HIS B 160 ASN B 165 1 O LEU B 162 N LEU B 119 SHEET 5 AA6 9 GLN B 216 ALA B 220 1 O GLY B 218 N THR B 163 SHEET 6 AA6 9 MET B 290 ASN B 294 1 O GLY B 292 N ILE B 219 SHEET 7 AA6 9 ASP B 347 GLU B 352 1 O TYR B 349 N ILE B 293 SHEET 8 AA6 9 HIS B 391 TRP B 398 1 O LYS B 393 N ILE B 348 SHEET 9 AA6 9 MET B 11 ALA B 15 1 N MET B 11 O LYS B 393 SHEET 1 AA7 3 ALA B 226 PRO B 228 0 SHEET 2 AA7 3 SER B 299 PHE B 303 1 O SER B 299 N VAL B 227 SHEET 3 AA7 3 SER B 312 ILE B 315 -1 O ILE B 315 N VAL B 300 SHEET 1 AA8 2 ILE B 417 ASP B 420 0 SHEET 2 AA8 2 VAL B 425 PRO B 428 -1 O THR B 427 N HIS B 418 CISPEP 1 ALA A 181 PRO A 182 0 6.44 CISPEP 2 TRP A 398 SER A 399 0 13.46 CISPEP 3 ALA B 181 PRO B 182 0 6.47 CISPEP 4 TRP B 398 SER B 399 0 13.99 SITE 1 AC1 11 GLN A 20 HIS A 121 TRP A 122 ASN A 165 SITE 2 AC1 11 GLU A 166 LEU A 173 TYR A 296 GLU A 352 SITE 3 AC1 11 TRP A 398 GLU A 405 TRP A 406 SITE 1 AC2 11 GLN B 20 HIS B 121 TRP B 122 ASN B 165 SITE 2 AC2 11 GLU B 166 LEU B 173 GLU B 352 TRP B 398 SITE 3 AC2 11 GLU B 405 TRP B 406 HOH B 622 CRYST1 146.096 146.096 140.345 90.00 90.00 90.00 P 4 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006845 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006845 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007125 0.00000