HEADER MEMBRANE PROTEIN 06-MAR-19 6QWR TITLE SOLID-STATE NMR STRUCTURE OF OUTER MEMBRANE PROTEIN ALKL IN DMPC LIPID TITLE 2 BILAYERS COMPND MOL_ID: 1; COMPND 2 MOLECULE: OUTER MEMBRANE PROTEIN ALKL; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS OLEOVORANS; SOURCE 3 ORGANISM_TAXID: 301; SOURCE 4 GENE: ALKL; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OUTER MEMBRANE PROTEIN, BETA BARREL, PORIN, TRANSPORTER, MEMBRANE KEYWDS 2 PROTEIN EXPDTA SOLID-STATE NMR NUMMDL 20 AUTHOR T.SCHUBEIS,L.B.ANDREAS,G.PINTACUDA REVDAT 5 14-JUN-23 6QWR 1 REMARK REVDAT 4 16-SEP-20 6QWR 1 JRNL REVDAT 3 02-SEP-20 6QWR 1 JRNL REVDAT 2 26-AUG-20 6QWR 1 JRNL REVDAT 1 18-MAR-20 6QWR 0 JRNL AUTH T.SCHUBEIS,T.LE MARCHAND,C.DADAY,W.KOPEC,K.TEKWANI MOVELLAN, JRNL AUTH 2 J.STANEK,T.S.SCHWARZER,K.CASTIGLIONE,B.L.DE GROOT, JRNL AUTH 3 G.PINTACUDA,L.B.ANDREAS JRNL TITL A BETA-BARREL FOR OIL TRANSPORT THROUGH LIPID MEMBRANES: JRNL TITL 2 DYNAMIC NMR STRUCTURES OF ALKL. JRNL REF PROC.NATL.ACAD.SCI.USA V. 117 21014 2020 JRNL REFN ESSN 1091-6490 JRNL PMID 32817429 JRNL DOI 10.1073/PNAS.2002598117 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QWR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1200013565. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5 W/W [U-13C; U-15N] OUTER REMARK 210 MEMBRANE PROTEIN ALKL, WATER; REMARK 210 0.5 W/W [U-13C; U-15N; U-2H] REMARK 210 OUTER MEMBRANE PROTEIN ALKL, REMARK 210 WATER REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HCANH; 3D HCONH; 3D REMARK 210 HCOCACONH; 3D HCACBCANH; 3D REMARK 210 HCACBCACONH; 3D HNCAHA; 3D REMARK 210 HNCOCAHA; 3D HCOCAHA; 3D REMARK 210 HCONCAHA; 3D HCCH-TOCSY; 3D HNHH REMARK 210 BASS-SD; 3D HNNH BASS-SD; 3D REMARK 210 HCCH BASS-SD; 3D HNHH RFDR; 3D REMARK 210 HCHH RFDR; 3D HCOCANH; 4D HNNH REMARK 210 RFDR REMARK 210 SPECTROMETER FIELD STRENGTH : 1000 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, SPARKY, CCPNMR REMARK 210 ANALYSIS, TALOS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 217 REMARK 217 SOLID STATE NMR STUDY REMARK 217 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLID REMARK 217 STATE NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 217 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 217 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 HIS A 212 REMARK 465 HIS A 213 REMARK 465 HIS A 214 REMARK 465 HIS A 215 REMARK 465 HIS A 216 REMARK 465 HIS A 217 REMARK 465 HIS A 218 REMARK 465 HIS A 219 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 31 135.10 -174.48 REMARK 500 1 PRO A 43 -177.40 -69.70 REMARK 500 1 VAL A 75 67.44 -117.07 REMARK 500 1 GLU A 84 -176.59 -176.44 REMARK 500 1 ARG A 114 -74.08 -51.91 REMARK 500 1 TYR A 116 68.11 -118.36 REMARK 500 1 ASP A 130 95.65 -61.15 REMARK 500 1 LYS A 131 -78.01 -115.10 REMARK 500 1 THR A 132 83.72 -161.95 REMARK 500 1 SER A 137 91.64 -65.73 REMARK 500 1 SER A 138 75.41 51.87 REMARK 500 1 ASP A 143 -173.62 -58.68 REMARK 500 1 TRP A 161 100.49 -171.97 REMARK 500 1 ILE A 170 93.91 -177.35 REMARK 500 1 THR A 179 140.56 -173.00 REMARK 500 1 PRO A 182 -170.57 -69.81 REMARK 500 2 ASN A 2 55.84 -106.77 REMARK 500 2 GLU A 3 55.97 -144.94 REMARK 500 2 PRO A 43 -177.40 -69.76 REMARK 500 2 ALA A 45 -178.59 -67.81 REMARK 500 2 VAL A 75 73.24 -115.17 REMARK 500 2 ALA A 77 -169.88 -68.71 REMARK 500 2 GLU A 84 -176.80 -173.84 REMARK 500 2 ASP A 110 53.88 -100.42 REMARK 500 2 ARG A 114 176.87 -58.56 REMARK 500 2 ASP A 130 108.07 -48.93 REMARK 500 2 LYS A 131 -80.84 -111.52 REMARK 500 2 THR A 132 81.00 -161.52 REMARK 500 2 SER A 137 83.20 -65.59 REMARK 500 2 SER A 138 75.15 50.31 REMARK 500 2 ASP A 143 -174.86 -58.21 REMARK 500 2 SER A 160 172.12 -52.05 REMARK 500 2 ILE A 170 102.92 -179.34 REMARK 500 2 PRO A 182 -165.64 -69.77 REMARK 500 3 ASN A 4 -61.29 -95.17 REMARK 500 3 TYR A 5 72.05 58.82 REMARK 500 3 PRO A 6 -171.57 -69.74 REMARK 500 3 GLU A 31 130.05 179.18 REMARK 500 3 LEU A 32 170.12 -51.90 REMARK 500 3 PRO A 43 -172.45 -69.76 REMARK 500 3 ASP A 52 65.52 -115.49 REMARK 500 3 VAL A 75 75.41 -112.93 REMARK 500 3 ALA A 77 -167.93 -76.29 REMARK 500 3 GLU A 84 -176.44 -170.47 REMARK 500 3 LYS A 85 -70.12 -86.19 REMARK 500 3 GLU A 113 177.26 -59.63 REMARK 500 3 ARG A 114 -65.55 -99.31 REMARK 500 3 LYS A 131 -79.61 -89.16 REMARK 500 3 THR A 132 113.22 -163.22 REMARK 500 3 SER A 137 94.06 -54.28 REMARK 500 REMARK 500 THIS ENTRY HAS 329 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6QAM RELATED DB: PDB REMARK 900 SOLUTION NMR STRUCTURE OF SAME PROTEIN REMARK 900 RELATED ID: 34365 RELATED DB: BMRB REMARK 900 SOLID-STATE NMR STRUCTURE OF OUTER MEMBRANE PROTEIN ALKL IN DMPC REMARK 900 LIPID BILAYERS DBREF 6QWR A 2 204 UNP Q00595 ALKL_PSEOL 28 230 SEQADV 6QWR MET A 1 UNP Q00595 INITIATING METHIONINE SEQADV 6QWR LYS A 205 UNP Q00595 EXPRESSION TAG SEQADV 6QWR LEU A 206 UNP Q00595 EXPRESSION TAG SEQADV 6QWR ALA A 207 UNP Q00595 EXPRESSION TAG SEQADV 6QWR ALA A 208 UNP Q00595 EXPRESSION TAG SEQADV 6QWR ALA A 209 UNP Q00595 EXPRESSION TAG SEQADV 6QWR LEU A 210 UNP Q00595 EXPRESSION TAG SEQADV 6QWR GLU A 211 UNP Q00595 EXPRESSION TAG SEQADV 6QWR HIS A 212 UNP Q00595 EXPRESSION TAG SEQADV 6QWR HIS A 213 UNP Q00595 EXPRESSION TAG SEQADV 6QWR HIS A 214 UNP Q00595 EXPRESSION TAG SEQADV 6QWR HIS A 215 UNP Q00595 EXPRESSION TAG SEQADV 6QWR HIS A 216 UNP Q00595 EXPRESSION TAG SEQADV 6QWR HIS A 217 UNP Q00595 EXPRESSION TAG SEQADV 6QWR HIS A 218 UNP Q00595 EXPRESSION TAG SEQADV 6QWR HIS A 219 UNP Q00595 EXPRESSION TAG SEQRES 1 A 219 MET ASN GLU ASN TYR PRO ALA LYS SER ALA GLY TYR ASN SEQRES 2 A 219 GLN GLY ASP TRP VAL ALA SER PHE ASN PHE SER LYS VAL SEQRES 3 A 219 TYR VAL GLY GLU GLU LEU GLY ASP LEU ASN VAL GLY GLY SEQRES 4 A 219 GLY ALA LEU PRO ASN ALA ASP VAL SER ILE GLY ASN ASP SEQRES 5 A 219 THR THR LEU THR PHE ASP ILE ALA TYR PHE VAL SER SER SEQRES 6 A 219 ASN ILE ALA VAL ASP PHE PHE VAL GLY VAL PRO ALA ARG SEQRES 7 A 219 ALA LYS PHE GLN GLY GLU LYS SER ILE SER SER LEU GLY SEQRES 8 A 219 ARG VAL SER GLU VAL ASP TYR GLY PRO ALA ILE LEU SER SEQRES 9 A 219 LEU GLN TYR HIS TYR ASP SER PHE GLU ARG LEU TYR PRO SEQRES 10 A 219 TYR VAL GLY VAL GLY VAL GLY ARG VAL LEU PHE PHE ASP SEQRES 11 A 219 LYS THR ASP GLY ALA LEU SER SER PHE ASP ILE LYS ASP SEQRES 12 A 219 LYS TRP ALA PRO ALA PHE GLN VAL GLY LEU ARG TYR ASP SEQRES 13 A 219 LEU GLY ASN SER TRP MET LEU ASN SER ASP VAL ARG TYR SEQRES 14 A 219 ILE PRO PHE LYS THR ASP VAL THR GLY THR LEU GLY PRO SEQRES 15 A 219 VAL PRO VAL SER THR LYS ILE GLU VAL ASP PRO PHE ILE SEQRES 16 A 219 LEU SER LEU GLY ALA SER TYR VAL PHE LYS LEU ALA ALA SEQRES 17 A 219 ALA LEU GLU HIS HIS HIS HIS HIS HIS HIS HIS HELIX 1 AA1 LYS A 85 GLY A 91 1 7 SHEET 1 AA111 ASP A 46 SER A 48 0 SHEET 2 AA111 ARG A 78 GLU A 84 -1 O GLN A 82 N SER A 48 SHEET 3 AA111 SER A 94 TYR A 107 -1 O VAL A 96 N ALA A 79 SHEET 4 AA111 TYR A 118 THR A 132 -1 O ARG A 125 N ALA A 101 SHEET 5 AA111 LYS A 144 TYR A 155 -1 O GLY A 152 N TYR A 118 SHEET 6 AA111 MET A 162 TYR A 169 -1 O LEU A 163 N TYR A 155 SHEET 7 AA111 PHE A 194 PHE A 204 -1 O ILE A 195 N ARG A 168 SHEET 8 AA111 ASP A 16 TYR A 27 -1 N TRP A 17 O PHE A 204 SHEET 9 AA111 THR A 56 PHE A 62 -1 O ALA A 60 N VAL A 18 SHEET 10 AA111 ILE A 67 VAL A 73 -1 O VAL A 69 N TYR A 61 SHEET 11 AA111 SER A 94 TYR A 107 -1 O ILE A 102 N PHE A 72 SHEET 1 AA2 3 ASP A 140 LYS A 142 0 SHEET 2 AA2 3 PHE A 172 THR A 177 -1 O ASP A 175 N LYS A 142 SHEET 3 AA2 3 THR A 187 VAL A 191 -1 O VAL A 191 N PHE A 172 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1