HEADER TRANSFERASE 08-MAR-19 6QYF TITLE 4'-PHOSPHOPANTETHEINYL TRANSFERASE PPTAB FROM MYCOBACTERIUM ABSCESSUS TITLE 2 AT PH 4.6 WITH MG2+ AND COA. COMPND MOL_ID: 1; COMPND 2 MOLECULE: POSSIBLE 4'-PHOSPHOPANTETHEINYL TRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTEROIDES ABSCESSUS ATCC 19977; SOURCE 3 ORGANISM_TAXID: 561007; SOURCE 4 GENE: MAB_3117C; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET26B KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.C.NGUYEN,L.MOUREY,J.D.PEDELACQ REVDAT 3 24-JAN-24 6QYF 1 REMARK REVDAT 2 11-NOV-20 6QYF 1 JRNL REVDAT 1 25-MAR-20 6QYF 0 JRNL AUTH M.C.NGUYEN,O.SAUREL,C.CARIVENC,S.GAVALDA,S.SAITTA,M.P.TRAN, JRNL AUTH 2 A.MILON,C.CHALUT,C.GUILHOT,L.MOUREY,J.D.PEDELACQ JRNL TITL CONFORMATIONAL FLEXIBILITY OF COENZYME A AND ITS IMPACT ON JRNL TITL 2 THE POST-TRANSLATIONAL MODIFICATION OF ACYL CARRIER PROTEINS JRNL TITL 3 BY 4'-PHOSPHOPANTETHEINYL TRANSFERASES. JRNL REF FEBS J. V. 287 4729 2020 JRNL REFN ISSN 1742-464X JRNL PMID 32128972 JRNL DOI 10.1111/FEBS.15273 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 56311 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.145 REMARK 3 R VALUE (WORKING SET) : 0.145 REMARK 3 FREE R VALUE : 0.158 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.810 REMARK 3 FREE R VALUE TEST SET COUNT : 3018 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.0000 - 3.9200 0.89 4382 124 0.1419 0.1362 REMARK 3 2 3.9200 - 3.1100 0.98 4813 138 0.1301 0.1315 REMARK 3 3 3.1100 - 2.7200 1.00 4879 143 0.1360 0.1764 REMARK 3 4 2.7200 - 2.4700 0.97 4734 135 0.1389 0.1847 REMARK 3 5 2.4700 - 2.2900 0.94 4611 133 0.1314 0.1283 REMARK 3 6 2.2900 - 2.1600 0.99 4843 138 0.1255 0.1342 REMARK 3 7 2.1600 - 2.0500 1.00 4908 141 0.1307 0.1325 REMARK 3 8 2.0500 - 1.9600 1.00 4858 142 0.1350 0.1309 REMARK 3 9 1.9600 - 1.8900 1.00 4919 141 0.1454 0.1693 REMARK 3 10 1.8900 - 1.8200 1.00 4871 145 0.1408 0.1673 REMARK 3 11 1.8200 - 1.7600 1.00 4873 139 0.1425 0.1496 REMARK 3 12 1.7600 - 1.7100 0.99 4826 138 0.1458 0.1926 REMARK 3 13 1.7100 - 1.6700 0.99 4929 143 0.1437 0.1732 REMARK 3 14 1.6700 - 1.6300 0.99 4797 141 0.1491 0.1833 REMARK 3 15 1.6300 - 1.5900 0.99 4815 143 0.1493 0.1599 REMARK 3 16 1.5900 - 1.5600 0.99 4845 137 0.1644 0.1816 REMARK 3 17 1.5600 - 1.5300 0.99 4846 141 0.1747 0.1988 REMARK 3 18 1.5300 - 1.5000 0.99 4840 140 0.1825 0.2219 REMARK 3 19 1.5000 - 1.4700 0.98 4772 134 0.2086 0.2325 REMARK 3 20 1.4700 - 1.4500 0.96 4716 139 0.2182 0.1838 REMARK 3 21 1.4500 - 1.4200 0.90 4381 128 0.2527 0.2925 REMARK 3 22 1.4200 - 1.4000 0.83 3993 115 0.2834 0.3624 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 5 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.5448 96.1694 129.9900 REMARK 3 T TENSOR REMARK 3 T11: 0.1591 T22: 0.1257 REMARK 3 T33: 0.1498 T12: 0.0400 REMARK 3 T13: -0.0042 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 3.8796 L22: 4.6376 REMARK 3 L33: 2.1767 L12: 2.2388 REMARK 3 L13: 1.6416 L23: -1.1804 REMARK 3 S TENSOR REMARK 3 S11: 0.0467 S12: 0.1645 S13: -0.4275 REMARK 3 S21: 0.0187 S22: -0.0237 S23: -0.2676 REMARK 3 S31: 0.6822 S32: 0.1741 S33: -0.0026 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 22 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.5450 117.4055 137.2083 REMARK 3 T TENSOR REMARK 3 T11: 0.0710 T22: 0.0990 REMARK 3 T33: 0.0957 T12: 0.0004 REMARK 3 T13: -0.0068 T23: -0.0142 REMARK 3 L TENSOR REMARK 3 L11: 1.9747 L22: 4.8726 REMARK 3 L33: 2.5152 L12: -0.3581 REMARK 3 L13: 0.0943 L23: -0.9180 REMARK 3 S TENSOR REMARK 3 S11: 0.0076 S12: 0.0120 S13: 0.2002 REMARK 3 S21: -0.0069 S22: -0.0585 S23: -0.1707 REMARK 3 S31: -0.1522 S32: 0.1880 S33: 0.0533 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 43 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.6740 111.3188 134.4066 REMARK 3 T TENSOR REMARK 3 T11: 0.0712 T22: 0.0602 REMARK 3 T33: 0.0903 T12: -0.0121 REMARK 3 T13: -0.0107 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 4.5640 L22: 3.8059 REMARK 3 L33: 5.2422 L12: -2.0821 REMARK 3 L13: -1.7736 L23: 1.9967 REMARK 3 S TENSOR REMARK 3 S11: -0.1150 S12: -0.1504 S13: 0.0187 REMARK 3 S21: 0.1304 S22: 0.1597 S23: -0.0823 REMARK 3 S31: 0.0446 S32: 0.2158 S33: -0.0213 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.0967 107.7232 124.7903 REMARK 3 T TENSOR REMARK 3 T11: 0.0831 T22: 0.0911 REMARK 3 T33: 0.1012 T12: 0.0057 REMARK 3 T13: 0.0014 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 2.0811 L22: 1.0601 REMARK 3 L33: 1.9183 L12: 0.0334 REMARK 3 L13: -0.4996 L23: 0.5767 REMARK 3 S TENSOR REMARK 3 S11: -0.0371 S12: 0.0774 S13: 0.0606 REMARK 3 S21: -0.0776 S22: 0.0350 S23: -0.1133 REMARK 3 S31: -0.0529 S32: 0.1430 S33: 0.0018 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.2066 102.5093 131.8400 REMARK 3 T TENSOR REMARK 3 T11: 0.1034 T22: 0.1202 REMARK 3 T33: 0.0957 T12: 0.0002 REMARK 3 T13: 0.0275 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 3.4456 L22: 1.7452 REMARK 3 L33: 2.6253 L12: 0.5748 REMARK 3 L13: -1.8335 L23: 0.6554 REMARK 3 S TENSOR REMARK 3 S11: 0.0735 S12: 0.0825 S13: 0.0550 REMARK 3 S21: -0.0433 S22: -0.0219 S23: 0.0804 REMARK 3 S31: -0.2297 S32: -0.2920 S33: -0.0017 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 129 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.9383 99.1045 121.2310 REMARK 3 T TENSOR REMARK 3 T11: 0.0856 T22: 0.1216 REMARK 3 T33: 0.0851 T12: -0.0031 REMARK 3 T13: 0.0049 T23: -0.0280 REMARK 3 L TENSOR REMARK 3 L11: 1.7981 L22: 1.2643 REMARK 3 L33: 2.1715 L12: 0.3458 REMARK 3 L13: -0.2745 L23: -0.5855 REMARK 3 S TENSOR REMARK 3 S11: -0.0614 S12: 0.2499 S13: -0.1002 REMARK 3 S21: -0.0853 S22: 0.0464 S23: 0.0022 REMARK 3 S31: 0.0898 S32: -0.0887 S33: 0.0221 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 209 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.4199 97.1344 123.5642 REMARK 3 T TENSOR REMARK 3 T11: 0.0906 T22: 0.0943 REMARK 3 T33: 0.1342 T12: -0.0099 REMARK 3 T13: 0.0015 T23: -0.0265 REMARK 3 L TENSOR REMARK 3 L11: 4.3634 L22: 2.5554 REMARK 3 L33: 6.0588 L12: -0.4060 REMARK 3 L13: -3.9570 L23: 0.4050 REMARK 3 S TENSOR REMARK 3 S11: -0.0399 S12: 0.2449 S13: -0.1369 REMARK 3 S21: -0.1402 S22: 0.0146 S23: -0.2181 REMARK 3 S31: 0.1737 S32: 0.0456 S33: 0.0605 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QYF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1292101003. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.967700 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : TRUNCATE REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56325 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 28.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4U89 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NA ACETATE 30 % PEG 4K 0.2 M NH4 REMARK 280 ACETATE, PH 4.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 31.54000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.11300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.54000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.11300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 886 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 VAL A 3 REMARK 465 THR A 4 REMARK 465 ALA A 223 REMARK 465 ALA A 224 REMARK 465 LEU A 225 REMARK 465 GLU A 226 REMARK 465 HIS A 227 REMARK 465 HIS A 228 REMARK 465 HIS A 229 REMARK 465 HIS A 230 REMARK 465 HIS A 231 REMARK 465 HIS A 232 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 606 O HOH A 728 2.16 REMARK 500 O HOH A 606 O HOH A 774 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 443 O HOH A 652 44710 2.01 REMARK 500 O HOH A 651 O HOH A 651 2575 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 874 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A 875 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A 876 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A 877 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A 878 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A 879 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH A 880 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH A 881 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH A 882 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH A 883 DISTANCE = 6.44 ANGSTROMS REMARK 525 HOH A 884 DISTANCE = 6.65 ANGSTROMS REMARK 525 HOH A 885 DISTANCE = 6.74 ANGSTROMS REMARK 525 HOH A 886 DISTANCE = 6.90 ANGSTROMS REMARK 525 HOH A 887 DISTANCE = 7.17 ANGSTROMS REMARK 525 HOH A 888 DISTANCE = 7.64 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 111 OD2 REMARK 620 2 ALA A 112 O 80.8 REMARK 620 3 GLU A 113 OE2 88.4 100.6 REMARK 620 4 COA A 301 O5A 83.0 162.6 85.2 REMARK 620 5 HOH A 639 O 164.5 96.6 107.1 97.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue COA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6QWU RELATED DB: PDB REMARK 900 PPTAB AT PH 5.5 WITH MN2+ AND COA REMARK 900 RELATED ID: 6QXQ RELATED DB: PDB REMARK 900 PPTAB AT PH 7 WITH MN2+ AND COA REMARK 900 RELATED ID: 6QXR RELATED DB: PDB REMARK 900 PPTAB AT PH 8.5 WITH MN2+ AND COA REMARK 900 RELATED ID: 6QYG RELATED DB: PDB REMARK 900 PPTAB AT PH 8.5 WITH MG2+ AND COA REMARK 900 RELATED ID: 6RCX RELATED DB: PDB REMARK 900 PPTAB-ACP COMPLEX AT PH 6.5 WITH MN2+ AND COA DBREF 6QYF A 1 219 UNP B1MD73 B1MD73_MYCA9 1 219 SEQADV 6QYF LYS A 220 UNP B1MD73 EXPRESSION TAG SEQADV 6QYF LEU A 221 UNP B1MD73 EXPRESSION TAG SEQADV 6QYF ALA A 222 UNP B1MD73 EXPRESSION TAG SEQADV 6QYF ALA A 223 UNP B1MD73 EXPRESSION TAG SEQADV 6QYF ALA A 224 UNP B1MD73 EXPRESSION TAG SEQADV 6QYF LEU A 225 UNP B1MD73 EXPRESSION TAG SEQADV 6QYF GLU A 226 UNP B1MD73 EXPRESSION TAG SEQADV 6QYF HIS A 227 UNP B1MD73 EXPRESSION TAG SEQADV 6QYF HIS A 228 UNP B1MD73 EXPRESSION TAG SEQADV 6QYF HIS A 229 UNP B1MD73 EXPRESSION TAG SEQADV 6QYF HIS A 230 UNP B1MD73 EXPRESSION TAG SEQADV 6QYF HIS A 231 UNP B1MD73 EXPRESSION TAG SEQADV 6QYF HIS A 232 UNP B1MD73 EXPRESSION TAG SEQRES 1 A 232 MET PRO VAL THR ASP GLN LEU ILE ALA SER VAL VAL PRO SEQRES 2 A 232 GLU LEU LEU PRO SER ALA GLU LEU TYR GLU ASP PRO PRO SEQRES 3 A 232 GLY LEU GLU PRO LEU PRO GLU GLU GLU PRO LEU ILE ALA SEQRES 4 A 232 LYS SER VAL ALA LYS ARG ARG ASN GLU PHE ILE THR VAL SEQRES 5 A 232 ARG TYR CYS ALA ARG GLN ALA LEU SER VAL LEU GLY ILE SEQRES 6 A 232 PRO GLU VAL PRO ILE LEU LYS GLY ASP LYS GLY GLN PRO SEQRES 7 A 232 LEU TRP PRO ASP GLY ILE VAL GLY SER MET THR HIS THR SEQRES 8 A 232 GLU GLY PHE ARG GLY ALA VAL VAL GLY ARG THR GLY GLU SEQRES 9 A 232 VAL ARG SER VAL GLY ILE ASP ALA GLU PRO HIS ASP VAL SEQRES 10 A 232 LEU PRO ASN GLY VAL LEU LYS SER ILE ALA LEU PRO VAL SEQRES 11 A 232 GLU ARG ASP GLU LEU ASP ALA LEU PRO ALA GLY THR HIS SEQRES 12 A 232 TRP ASP ARG LEU LEU PHE CYS ALA LYS GLU THR THR TYR SEQRES 13 A 232 LYS ALA TRP PHE PRO LEU THR ALA ARG TRP LEU GLY PHE SEQRES 14 A 232 GLU ASP ALA HIS ILE THR ILE ASP PRO ASP GLY THR PHE SEQRES 15 A 232 THR SER ARG ILE LEU VAL ASP GLY ARG ALA ASN ASP GLY SEQRES 16 A 232 THR VAL LEU SER ALA PHE ASP GLY ARG TRP ILE ILE ASP SEQRES 17 A 232 LYS GLY LEU ILE LEU THR ALA ILE VAL VAL PRO LYS LEU SEQRES 18 A 232 ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS HET COA A 301 80 HET MG A 302 1 HETNAM COA COENZYME A HETNAM MG MAGNESIUM ION FORMUL 2 COA C21 H36 N7 O16 P3 S FORMUL 3 MG MG 2+ FORMUL 4 HOH *488(H2 O) HELIX 1 AA1 LEU A 7 VAL A 11 5 5 HELIX 2 AA2 LEU A 31 ALA A 39 5 9 HELIX 3 AA3 VAL A 42 LEU A 63 1 22 HELIX 4 AA4 GLY A 121 ALA A 127 1 7 HELIX 5 AA5 LEU A 128 LEU A 138 1 11 HELIX 6 AA6 HIS A 143 ALA A 164 1 22 HELIX 7 AA7 GLY A 168 GLU A 170 5 3 SHEET 1 AA1 3 SER A 18 LEU A 21 0 SHEET 2 AA1 3 PHE A 94 ARG A 101 -1 O ARG A 95 N LEU A 21 SHEET 3 AA1 3 ILE A 84 THR A 91 -1 N THR A 91 O PHE A 94 SHEET 1 AA2 5 VAL A 105 PRO A 114 0 SHEET 2 AA2 5 LEU A 211 PRO A 219 -1 O ILE A 212 N GLU A 113 SHEET 3 AA2 5 ALA A 200 ASP A 208 -1 N ILE A 206 O LEU A 213 SHEET 4 AA2 5 THR A 181 ILE A 186 -1 N PHE A 182 O GLY A 203 SHEET 5 AA2 5 ALA A 172 ASP A 177 -1 N ASP A 177 O THR A 181 LINK OD2 ASP A 111 MG MG A 302 1555 1555 2.53 LINK O ALA A 112 MG MG A 302 1555 1555 2.41 LINK OE2 GLU A 113 MG MG A 302 1555 1555 2.54 LINK O5A COA A 301 MG MG A 302 1555 1555 2.41 LINK MG MG A 302 O HOH A 639 1555 1555 2.20 SITE 1 AC1 32 ARG A 45 ARG A 53 LYS A 72 LYS A 75 SITE 2 AC1 32 GLY A 76 GLN A 77 PRO A 78 MET A 88 SITE 3 AC1 32 THR A 89 HIS A 90 ASP A 111 GLU A 113 SITE 4 AC1 32 LYS A 152 GLU A 153 TYR A 156 LYS A 157 SITE 5 AC1 32 PHE A 160 TRP A 166 LEU A 167 GLY A 168 SITE 6 AC1 32 PHE A 169 MG A 302 HOH A 402 HOH A 426 SITE 7 AC1 32 HOH A 452 HOH A 495 HOH A 508 HOH A 509 SITE 8 AC1 32 HOH A 563 HOH A 564 HOH A 603 HOH A 644 SITE 1 AC2 5 ASP A 111 ALA A 112 GLU A 113 COA A 301 SITE 2 AC2 5 HOH A 639 CRYST1 63.080 82.226 55.996 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015853 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012162 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017858 0.00000