HEADER OXIDOREDUCTASE 11-MAR-19 6QZN TITLE H30 MNSOD-3 MUTANT III COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE [MN] 2, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 EC: 1.15.1.1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: RESIDUE 128 IS S-HYDROXYCYSTEINE INSTEAD OF CYSTEINE; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: SUPEROXIDE DISMUTASE [MN] 2, MITOCHONDRIAL; COMPND 10 CHAIN: C; COMPND 11 EC: 1.15.1.1; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: RESIDUE 128 IS S-HYDROXYCYSTEINE INSTEAD OF CYSTEINE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 3 ORGANISM_TAXID: 6239; SOURCE 4 GENE: SOD-3, C08A9.1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 9 ORGANISM_TAXID: 6239; SOURCE 10 GENE: SOD-3, C08A9.1; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SUPEROXIDE, MUTATION, DISMUTASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR R.BONETTA,C.H.TRINH,G.J.HUNTER,T.HUNTER REVDAT 3 13-NOV-24 6QZN 1 REMARK REVDAT 2 24-JAN-24 6QZN 1 LINK REVDAT 1 19-FEB-20 6QZN 0 JRNL AUTH R.BONETTA,C.H.TRINH,G.J.HUNTER,T.HUNTER JRNL TITL H30 MNSOD-3 MUTANT II JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 54898 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2967 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.64 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.68 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3988 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.2440 REMARK 3 BIN FREE R VALUE SET COUNT : 219 REMARK 3 BIN FREE R VALUE : 0.2650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3146 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 274 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.51000 REMARK 3 B22 (A**2) : 0.51000 REMARK 3 B33 (A**2) : -1.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.096 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.095 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.073 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.779 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3253 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3080 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4409 ; 1.548 ; 1.931 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7096 ; 0.954 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 393 ; 5.558 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 163 ;32.028 ;25.215 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 565 ;13.793 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ; 8.962 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 463 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3698 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 776 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1560 ; 0.729 ; 1.506 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1559 ; 0.728 ; 1.504 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1948 ; 1.155 ; 2.253 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1949 ; 1.155 ; 2.255 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1693 ; 1.093 ; 1.641 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1690 ; 1.090 ; 1.630 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2452 ; 1.706 ; 2.384 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4016 ; 5.951 ;13.181 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3899 ; 5.845 ;12.557 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 194 REMARK 3 ORIGIN FOR THE GROUP (A): 26.5640 5.8850 -0.4530 REMARK 3 T TENSOR REMARK 3 T11: 0.1505 T22: 0.1130 REMARK 3 T33: 0.1902 T12: 0.0402 REMARK 3 T13: 0.0689 T23: 0.0826 REMARK 3 L TENSOR REMARK 3 L11: 1.4059 L22: 2.2230 REMARK 3 L33: 3.1977 L12: 0.4878 REMARK 3 L13: -0.0269 L23: -1.6183 REMARK 3 S TENSOR REMARK 3 S11: 0.0123 S12: -0.1328 S13: -0.0903 REMARK 3 S21: -0.3587 S22: -0.3511 S23: -0.4329 REMARK 3 S31: 0.5686 S32: 0.4294 S33: 0.3389 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 0 C 194 REMARK 3 ORIGIN FOR THE GROUP (A): -8.5570 -2.4420 14.0950 REMARK 3 T TENSOR REMARK 3 T11: 0.0102 T22: 0.1515 REMARK 3 T33: 0.1989 T12: 0.0127 REMARK 3 T13: 0.0175 T23: 0.0800 REMARK 3 L TENSOR REMARK 3 L11: 1.2083 L22: 1.2343 REMARK 3 L33: 2.2096 L12: -0.1700 REMARK 3 L13: 0.5651 L23: -0.5948 REMARK 3 S TENSOR REMARK 3 S11: -0.0057 S12: -0.3213 S13: -0.1336 REMARK 3 S21: 0.1065 S22: 0.1388 S23: 0.2710 REMARK 3 S31: -0.0788 S32: -0.4735 S33: -0.1331 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6QZN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1292101196. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.09 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57915 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.640 REMARK 200 RESOLUTION RANGE LOW (A) : 57.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.64 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3DC5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BICINE AMMONIUM SULFATE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.78500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 40.95000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 40.95000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 34.39250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 40.95000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 40.95000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 103.17750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 40.95000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.95000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 34.39250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 40.95000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.95000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 103.17750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 68.78500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 349 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 346 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 155 CB - CG - OD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 ARG C 98 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 141 -121.91 61.15 REMARK 500 TYR A 161 -16.56 -140.64 REMARK 500 LYS A 166 -130.30 52.47 REMARK 500 ASP C 84 79.91 -108.00 REMARK 500 ASN C 141 -122.64 57.82 REMARK 500 TYR C 161 -18.36 -147.83 REMARK 500 LYS C 166 -135.84 57.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 26 NE2 REMARK 620 2 HIS A 74 NE2 88.7 REMARK 620 3 ASP A 155 OD2 86.3 112.0 REMARK 620 4 HIS A 159 NE2 90.2 135.2 112.6 REMARK 620 5 HOH A 348 O 175.0 94.0 88.8 90.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 26 NE2 REMARK 620 2 HIS C 74 NE2 91.6 REMARK 620 3 ASP C 155 OD2 85.4 111.1 REMARK 620 4 HIS C 159 NE2 91.8 136.6 112.3 REMARK 620 5 HOH C 308 O 176.5 90.4 91.2 88.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 202 DBREF 6QZN A 1 194 UNP P41977 SODM2_CAEEL 25 218 DBREF 6QZN C 1 194 UNP P41977 SODM2_CAEEL 25 218 SEQADV 6QZN GLN A 30 UNP P41977 HIS 54 ENGINEERED MUTATION SEQADV 6QZN MET C 0 UNP P41977 INITIATING METHIONINE SEQADV 6QZN GLN C 30 UNP P41977 HIS 54 CONFLICT SEQRES 1 A 194 LYS HIS THR LEU PRO ASP LEU PRO PHE ASP TYR ALA ASP SEQRES 2 A 194 LEU GLU PRO VAL ILE SER HIS GLU ILE MET GLN LEU HIS SEQRES 3 A 194 HIS GLN LYS GLN HIS ALA THR TYR VAL ASN ASN LEU ASN SEQRES 4 A 194 GLN ILE GLU GLU LYS LEU HIS GLU ALA VAL SER LYS GLY SEQRES 5 A 194 ASN LEU LYS GLU ALA ILE ALA LEU GLN PRO ALA LEU LYS SEQRES 6 A 194 PHE ASN GLY GLY GLY HIS ILE ASN HIS SER ILE PHE TRP SEQRES 7 A 194 THR ASN LEU ALA LYS ASP GLY GLY GLU PRO SER LYS GLU SEQRES 8 A 194 LEU MET ASP THR ILE LYS ARG ASP PHE GLY SER LEU ASP SEQRES 9 A 194 ASN LEU GLN LYS ARG LEU SER ASP ILE THR ILE ALA VAL SEQRES 10 A 194 GLN GLY SER GLY TRP GLY TRP LEU GLY TYR CSO LYS LYS SEQRES 11 A 194 ASP LYS ILE LEU LYS ILE ALA THR CYS ALA ASN GLN ASP SEQRES 12 A 194 PRO LEU GLU GLY MET VAL PRO LEU PHE GLY ILE ASP VAL SEQRES 13 A 194 TRP GLU HIS ALA TYR TYR LEU GLN TYR LYS ASN VAL ARG SEQRES 14 A 194 PRO ASP TYR VAL HIS ALA ILE TRP LYS ILE ALA ASN TRP SEQRES 15 A 194 LYS ASN ILE SER GLU ARG PHE ALA ASN ALA ARG GLN SEQRES 1 C 195 MET LYS HIS THR LEU PRO ASP LEU PRO PHE ASP TYR ALA SEQRES 2 C 195 ASP LEU GLU PRO VAL ILE SER HIS GLU ILE MET GLN LEU SEQRES 3 C 195 HIS HIS GLN LYS GLN HIS ALA THR TYR VAL ASN ASN LEU SEQRES 4 C 195 ASN GLN ILE GLU GLU LYS LEU HIS GLU ALA VAL SER LYS SEQRES 5 C 195 GLY ASN LEU LYS GLU ALA ILE ALA LEU GLN PRO ALA LEU SEQRES 6 C 195 LYS PHE ASN GLY GLY GLY HIS ILE ASN HIS SER ILE PHE SEQRES 7 C 195 TRP THR ASN LEU ALA LYS ASP GLY GLY GLU PRO SER LYS SEQRES 8 C 195 GLU LEU MET ASP THR ILE LYS ARG ASP PHE GLY SER LEU SEQRES 9 C 195 ASP ASN LEU GLN LYS ARG LEU SER ASP ILE THR ILE ALA SEQRES 10 C 195 VAL GLN GLY SER GLY TRP GLY TRP LEU GLY TYR CSO LYS SEQRES 11 C 195 LYS ASP LYS ILE LEU LYS ILE ALA THR CYS ALA ASN GLN SEQRES 12 C 195 ASP PRO LEU GLU GLY MET VAL PRO LEU PHE GLY ILE ASP SEQRES 13 C 195 VAL TRP GLU HIS ALA TYR TYR LEU GLN TYR LYS ASN VAL SEQRES 14 C 195 ARG PRO ASP TYR VAL HIS ALA ILE TRP LYS ILE ALA ASN SEQRES 15 C 195 TRP LYS ASN ILE SER GLU ARG PHE ALA ASN ALA ARG GLN MODRES 6QZN CSO A 128 CYS MODIFIED RESIDUE MODRES 6QZN CSO C 128 CYS MODIFIED RESIDUE HET CSO A 128 7 HET CSO C 128 7 HET MN A 201 1 HET MN C 201 1 HET SO4 C 202 5 HETNAM CSO S-HYDROXYCYSTEINE HETNAM MN MANGANESE (II) ION HETNAM SO4 SULFATE ION FORMUL 1 CSO 2(C3 H7 N O3 S) FORMUL 3 MN 2(MN 2+) FORMUL 5 SO4 O4 S 2- FORMUL 6 HOH *274(H2 O) HELIX 1 AA1 SER A 19 LYS A 29 1 11 HELIX 2 AA2 LYS A 29 LYS A 51 1 23 HELIX 3 AA3 ASN A 53 LEU A 60 1 8 HELIX 4 AA4 LEU A 60 ASN A 80 1 21 HELIX 5 AA5 SER A 89 GLY A 101 1 13 HELIX 6 AA6 SER A 102 ALA A 116 1 15 HELIX 7 AA7 TRP A 157 ALA A 160 5 4 HELIX 8 AA8 TYR A 161 LYS A 166 1 6 HELIX 9 AA9 VAL A 168 ILE A 176 1 9 HELIX 10 AB1 TRP A 177 ALA A 180 5 4 HELIX 11 AB2 ASN A 181 ARG A 193 1 13 HELIX 12 AB3 SER C 19 LYS C 29 1 11 HELIX 13 AB4 LYS C 29 GLY C 52 1 24 HELIX 14 AB5 ASN C 53 LEU C 60 1 8 HELIX 15 AB6 LEU C 60 ASN C 80 1 21 HELIX 16 AB7 SER C 89 GLY C 101 1 13 HELIX 17 AB8 SER C 102 ALA C 116 1 15 HELIX 18 AB9 TRP C 157 ALA C 160 5 4 HELIX 19 AC1 TYR C 161 LYS C 166 1 6 HELIX 20 AC2 VAL C 168 TRP C 177 1 10 HELIX 21 AC3 LYS C 178 ALA C 180 5 3 HELIX 22 AC4 ASN C 181 ARG C 193 1 13 SHEET 1 AA1 3 ILE A 133 ALA A 140 0 SHEET 2 AA1 3 GLY A 121 CSO A 128 -1 N CSO A 128 O ILE A 133 SHEET 3 AA1 3 VAL A 149 ASP A 155 -1 O ILE A 154 N GLY A 123 SHEET 1 AA2 3 ILE C 133 ALA C 140 0 SHEET 2 AA2 3 GLY C 121 CSO C 128 -1 N CSO C 128 O ILE C 133 SHEET 3 AA2 3 VAL C 149 ASP C 155 -1 O LEU C 151 N LEU C 125 LINK C TYR A 127 N CSO A 128 1555 1555 1.33 LINK C CSO A 128 N LYS A 129 1555 1555 1.33 LINK C TYR C 127 N CSO C 128 1555 1555 1.33 LINK C CSO C 128 N LYS C 129 1555 1555 1.33 LINK NE2 HIS A 26 MN MN A 201 1555 1555 2.19 LINK NE2 HIS A 74 MN MN A 201 1555 1555 2.23 LINK OD2 ASP A 155 MN MN A 201 1555 1555 1.86 LINK NE2 HIS A 159 MN MN A 201 1555 1555 2.15 LINK MN MN A 201 O HOH A 348 1555 1555 2.11 LINK NE2 HIS C 26 MN MN C 201 1555 1555 2.12 LINK NE2 HIS C 74 MN MN C 201 1555 1555 2.24 LINK OD2 ASP C 155 MN MN C 201 1555 1555 1.99 LINK NE2 HIS C 159 MN MN C 201 1555 1555 2.15 LINK MN MN C 201 O HOH C 308 1555 1555 2.17 CISPEP 1 GLU A 15 PRO A 16 0 18.34 CISPEP 2 GLU C 15 PRO C 16 0 2.11 SITE 1 AC1 5 HIS A 26 HIS A 74 ASP A 155 HIS A 159 SITE 2 AC1 5 HOH A 348 SITE 1 AC2 5 HIS C 26 HIS C 74 ASP C 155 HIS C 159 SITE 2 AC2 5 HOH C 308 SITE 1 AC3 4 LYS C 29 ASN C 167 VAL C 168 HOH C 304 CRYST1 81.900 81.900 137.570 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012210 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012210 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007269 0.00000