HEADER TRANSFERASE 12-MAR-19 6QZZ TITLE FULL LENGTH OPHA V404E IN COMPLEX WITH SAH COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDE N-METHYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PEPTIDE N-METHYLTRANSFERASE; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OMPHALOTUS OLEARIUS; SOURCE 3 ORGANISM_COMMON: JACK O'LANTERN; SOURCE 4 ORGANISM_TAXID: 72120; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: OMPHALOTUS OLEARIUS; SOURCE 9 ORGANISM_COMMON: JACK O'LANTERN; SOURCE 10 ORGANISM_TAXID: 72120; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS PEPTIDE BOND N-METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.SONG,J.H.NAISMITH REVDAT 5 24-JAN-24 6QZZ 1 REMARK REVDAT 4 15-NOV-23 6QZZ 1 LINK ATOM REVDAT 3 29-JUL-20 6QZZ 1 JRNL REVDAT 2 24-JUN-20 6QZZ 1 JRNL REVDAT 1 01-APR-20 6QZZ 0 JRNL AUTH H.SONG,J.R.FAHRIG-KAMARAUSKAITE,E.MATABARO,H.KASPAR, JRNL AUTH 2 S.L.SHIRRAN,C.ZACH,A.PACE,B.A.STEFANOV,J.H.NAISMITH, JRNL AUTH 3 M.KUNZLER JRNL TITL SUBSTRATE PLASTICITY OF A FUNGAL PEPTIDE JRNL TITL 2 ALPHA-N-METHYLTRANSFERASE. JRNL REF ACS CHEM.BIOL. V. 15 1901 2020 JRNL REFN ESSN 1554-8937 JRNL PMID 32491837 JRNL DOI 10.1021/ACSCHEMBIO.0C00237 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 80.05 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 104622 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 5568 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7547 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.3490 REMARK 3 BIN FREE R VALUE SET COUNT : 449 REMARK 3 BIN FREE R VALUE : 0.3650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6083 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 324 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.75000 REMARK 3 B22 (A**2) : -0.91000 REMARK 3 B33 (A**2) : 0.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.112 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.106 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.091 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.390 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6353 ; 0.007 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5872 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8660 ; 1.393 ; 1.648 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13646 ; 1.270 ; 1.574 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 792 ; 6.783 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 316 ;33.060 ;22.310 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1014 ;13.355 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;16.221 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 829 ; 0.063 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7159 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1284 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3177 ; 4.410 ; 3.055 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3177 ; 4.410 ; 3.055 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3973 ; 5.382 ; 4.549 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3974 ; 5.382 ; 4.549 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3176 ; 5.867 ; 3.534 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3176 ; 5.867 ; 3.535 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4688 ; 7.929 ; 5.110 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7060 ; 9.723 ;37.778 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6986 ; 9.723 ;37.410 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 7 501 B 7 412 12030 0.08 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 501 REMARK 3 ORIGIN FOR THE GROUP (A): -27.5113 0.3144 -21.3551 REMARK 3 T TENSOR REMARK 3 T11: 0.0277 T22: 0.0933 REMARK 3 T33: 0.0883 T12: -0.0099 REMARK 3 T13: -0.0163 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 0.4481 L22: 2.4121 REMARK 3 L33: 0.7729 L12: 0.0601 REMARK 3 L13: 0.0596 L23: -0.2078 REMARK 3 S TENSOR REMARK 3 S11: -0.0449 S12: -0.0097 S13: 0.0017 REMARK 3 S21: 0.0852 S22: 0.1168 S23: -0.4032 REMARK 3 S31: -0.0151 S32: -0.0422 S33: -0.0720 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 7 B 501 REMARK 3 ORIGIN FOR THE GROUP (A): -27.5998 -0.8479 -21.6563 REMARK 3 T TENSOR REMARK 3 T11: 0.0279 T22: 0.0875 REMARK 3 T33: 0.0828 T12: -0.0108 REMARK 3 T13: 0.0021 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.4165 L22: 2.3486 REMARK 3 L33: 0.6828 L12: -0.1047 REMARK 3 L13: 0.0822 L23: -0.1938 REMARK 3 S TENSOR REMARK 3 S11: -0.0586 S12: 0.0185 S13: 0.0185 REMARK 3 S21: -0.0862 S22: 0.1297 S23: -0.3807 REMARK 3 S31: 0.0393 S32: -0.0474 S33: -0.0711 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.10 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6QZZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1292101200. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 110277 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 80.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.76600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5N0O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.3-0.4 M KSCN, 0.1 M BICINE PH 9, 1.8 REMARK 280 -2.3 M SODIUM MALONATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 82.00100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.86150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 82.00100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.86150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -90.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 2 REMARK 465 THR A 3 REMARK 465 SER A 4 REMARK 465 THR A 5 REMARK 465 GLN A 6 REMARK 465 ASP A 384 REMARK 465 ALA A 385 REMARK 465 ALA A 386 REMARK 465 ARG A 387 REMARK 465 GLU A 388 REMARK 465 SER A 389 REMARK 465 GLY A 390 REMARK 465 GLU A 391 REMARK 465 GLU A 392 REMARK 465 ALA A 393 REMARK 465 SER A 394 REMARK 465 GLN A 395 REMARK 465 SER A 412 REMARK 465 VAL A 413 REMARK 465 MET A 414 REMARK 465 SER A 415 REMARK 465 THR A 416 REMARK 465 GLU A 417 REMARK 465 GLY B 2 REMARK 465 THR B 3 REMARK 465 SER B 4 REMARK 465 THR B 5 REMARK 465 GLN B 6 REMARK 465 ALA B 385 REMARK 465 ALA B 386 REMARK 465 ARG B 387 REMARK 465 GLU B 388 REMARK 465 SER B 389 REMARK 465 GLY B 390 REMARK 465 GLU B 391 REMARK 465 GLU B 392 REMARK 465 ALA B 393 REMARK 465 SER B 394 REMARK 465 GLN B 395 REMARK 465 ASN B 396 REMARK 465 GLY B 397 REMARK 465 PHE B 398 REMARK 465 VAL B 413 REMARK 465 MET B 414 REMARK 465 SER B 415 REMARK 465 THR B 416 REMARK 465 GLU B 417 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO A 399 OH TYR B 98 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 201 C GLU A 201 O 0.170 REMARK 500 GLU B 201 C GLU B 201 O 0.164 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 22 -57.13 70.45 REMARK 500 CYS A 175 49.44 -140.24 REMARK 500 ASP A 180 -155.47 -115.63 REMARK 500 ASP A 187 98.37 -68.81 REMARK 500 LEU A 266 43.09 -81.77 REMARK 500 PRO A 268 92.41 -51.47 REMARK 500 THR A 320 -167.36 -126.07 REMARK 500 ASP A 344 85.22 -159.08 REMARK 500 ASP A 354 5.96 81.64 REMARK 500 ILE B 22 -57.61 71.14 REMARK 500 PRO B 145 60.81 -119.66 REMARK 500 CYS B 175 50.19 -141.66 REMARK 500 ASP B 180 -155.29 -115.55 REMARK 500 ASP B 187 98.32 -66.03 REMARK 500 LEU B 266 44.68 -81.89 REMARK 500 PRO B 268 91.15 -53.78 REMARK 500 TYR B 295 72.95 -119.97 REMARK 500 THR B 320 -168.82 -123.93 REMARK 500 ASP B 344 84.70 -159.37 REMARK 500 ASP B 354 6.68 81.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 266 LEU A 267 -139.12 REMARK 500 PHE B 186 ASP B 187 147.96 REMARK 500 LEU B 266 LEU B 267 -140.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH B 501 DBREF 6QZZ A 2 417 PDB 6QZZ 6QZZ 2 417 DBREF 6QZZ B 2 417 PDB 6QZZ 6QZZ 2 417 SEQRES 1 A 416 GLY THR SER THR GLN THR LYS ALA GLY SER LEU THR ILE SEQRES 2 A 416 VAL GLY THR GLY ILE GLU SER ILE GLY GLN MET THR LEU SEQRES 3 A 416 GLN ALA LEU SER TYR ILE GLU ALA ALA ALA LYS VAL PHE SEQRES 4 A 416 TYR CYS VAL ILE ASP PRO ALA THR GLU ALA PHE ILE LEU SEQRES 5 A 416 THR LYS ASN LYS ASN CYS VAL ASP LEU TYR GLN TYR TYR SEQRES 6 A 416 ASP ASN GLY LYS SER ARG LEU ASN THR TYR THR GLN MET SEQRES 7 A 416 SER GLU LEU MET VAL ARG GLU VAL ARG LYS GLY LEU ASP SEQRES 8 A 416 VAL VAL GLY VAL PHE TYR GLY HIS PRO GLY VAL PHE VAL SEQRES 9 A 416 ASN PRO SER HIS ARG ALA LEU ALA ILE ALA LYS SER GLU SEQRES 10 A 416 GLY TYR ARG ALA ARG MET LEU PRO GLY VAL SER ALA GLU SEQRES 11 A 416 ASP CYS LEU PHE ALA ASP LEU CYS ILE ASP PRO SER ASN SEQRES 12 A 416 PRO GLY CYS LEU THR TYR GLU ALA SER ASP PHE LEU ILE SEQRES 13 A 416 ARG ASP ARG PRO VAL SER ILE HIS SER HIS LEU VAL LEU SEQRES 14 A 416 PHE GLN VAL GLY CYS VAL GLY ILE ALA ASP PHE ASN PHE SEQRES 15 A 416 THR GLY PHE ASP ASN ASN LYS PHE GLY VAL LEU VAL ASP SEQRES 16 A 416 ARG LEU GLU GLN GLU TYR GLY ALA GLU HIS PRO VAL VAL SEQRES 17 A 416 HIS TYR ILE ALA ALA MET MET PRO HIS GLN ASP PRO VAL SEQRES 18 A 416 THR ASP LYS TYR THR VAL ALA GLN LEU ARG GLU PRO GLU SEQRES 19 A 416 ILE ALA LYS ARG VAL GLY GLY VAL SER THR PHE TYR ILE SEQRES 20 A 416 PRO PRO LYS ALA ARG LYS ALA SER ASN LEU ASP ILE ILE SEQRES 21 A 416 ARG ARG LEU GLU LEU LEU PRO ALA GLY GLN VAL PRO ASP SEQRES 22 A 416 LYS LYS ALA ARG ILE TYR PRO ALA ASN GLN TRP GLU PRO SEQRES 23 A 416 ASP VAL PRO GLU VAL GLU PRO TYR ARG PRO SER ASP GLN SEQRES 24 A 416 ALA ALA ILE ALA GLN LEU ALA ASP HIS ALA PRO PRO GLU SEQRES 25 A 416 GLN TYR GLN PRO LEU ALA THR SER LYS ALA MET SER ASP SEQRES 26 A 416 VAL MET THR LYS LEU ALA LEU ASP PRO LYS ALA LEU ALA SEQRES 27 A 416 ASP TYR LYS ALA ASP HIS ARG ALA PHE ALA GLN SER VAL SEQRES 28 A 416 PRO ASP LEU THR PRO GLN GLU ARG ALA ALA LEU GLU LEU SEQRES 29 A 416 GLY ASP SER TRP ALA ILE ARG CYS ALA MET LYS ASN MET SEQRES 30 A 416 PRO SER SER LEU LEU ASP ALA ALA ARG GLU SER GLY GLU SEQRES 31 A 416 GLU ALA SER GLN ASN GLY PHE PRO TRP MVA ILE VAL GLU SEQRES 32 A 416 GLY VAL ILE GLY VAL ILE GLY SER VAL MET SER THR GLU SEQRES 1 B 416 GLY THR SER THR GLN THR LYS ALA GLY SER LEU THR ILE SEQRES 2 B 416 VAL GLY THR GLY ILE GLU SER ILE GLY GLN MET THR LEU SEQRES 3 B 416 GLN ALA LEU SER TYR ILE GLU ALA ALA ALA LYS VAL PHE SEQRES 4 B 416 TYR CYS VAL ILE ASP PRO ALA THR GLU ALA PHE ILE LEU SEQRES 5 B 416 THR LYS ASN LYS ASN CYS VAL ASP LEU TYR GLN TYR TYR SEQRES 6 B 416 ASP ASN GLY LYS SER ARG LEU ASN THR TYR THR GLN MET SEQRES 7 B 416 SER GLU LEU MET VAL ARG GLU VAL ARG LYS GLY LEU ASP SEQRES 8 B 416 VAL VAL GLY VAL PHE TYR GLY HIS PRO GLY VAL PHE VAL SEQRES 9 B 416 ASN PRO SER HIS ARG ALA LEU ALA ILE ALA LYS SER GLU SEQRES 10 B 416 GLY TYR ARG ALA ARG MET LEU PRO GLY VAL SER ALA GLU SEQRES 11 B 416 ASP CYS LEU PHE ALA ASP LEU CYS ILE ASP PRO SER ASN SEQRES 12 B 416 PRO GLY CYS LEU THR TYR GLU ALA SER ASP PHE LEU ILE SEQRES 13 B 416 ARG ASP ARG PRO VAL SER ILE HIS SER HIS LEU VAL LEU SEQRES 14 B 416 PHE GLN VAL GLY CYS VAL GLY ILE ALA ASP PHE ASN PHE SEQRES 15 B 416 THR GLY PHE ASP ASN ASN LYS PHE GLY VAL LEU VAL ASP SEQRES 16 B 416 ARG LEU GLU GLN GLU TYR GLY ALA GLU HIS PRO VAL VAL SEQRES 17 B 416 HIS TYR ILE ALA ALA MET MET PRO HIS GLN ASP PRO VAL SEQRES 18 B 416 THR ASP LYS TYR THR VAL ALA GLN LEU ARG GLU PRO GLU SEQRES 19 B 416 ILE ALA LYS ARG VAL GLY GLY VAL SER THR PHE TYR ILE SEQRES 20 B 416 PRO PRO LYS ALA ARG LYS ALA SER ASN LEU ASP ILE ILE SEQRES 21 B 416 ARG ARG LEU GLU LEU LEU PRO ALA GLY GLN VAL PRO ASP SEQRES 22 B 416 LYS LYS ALA ARG ILE TYR PRO ALA ASN GLN TRP GLU PRO SEQRES 23 B 416 ASP VAL PRO GLU VAL GLU PRO TYR ARG PRO SER ASP GLN SEQRES 24 B 416 ALA ALA ILE ALA GLN LEU ALA ASP HIS ALA PRO PRO GLU SEQRES 25 B 416 GLN TYR GLN PRO LEU ALA THR SER LYS ALA MET SER ASP SEQRES 26 B 416 VAL MET THR LYS LEU ALA LEU ASP PRO LYS ALA LEU ALA SEQRES 27 B 416 ASP TYR LYS ALA ASP HIS ARG ALA PHE ALA GLN SER VAL SEQRES 28 B 416 PRO ASP LEU THR PRO GLN GLU ARG ALA ALA LEU GLU LEU SEQRES 29 B 416 GLY ASP SER TRP ALA ILE ARG CYS ALA MET LYS ASN MET SEQRES 30 B 416 PRO SER SER LEU LEU ASP ALA ALA ARG GLU SER GLY GLU SEQRES 31 B 416 GLU ALA SER GLN ASN GLY PHE PRO TRP MVA ILE MVA EME SEQRES 32 B 416 GLY VAL ILE GLY VAL ILE GLY SER VAL MET SER THR GLU MODRES 6QZZ MVA A 401 VAL MODIFIED RESIDUE MODRES 6QZZ MVA B 401 VAL MODIFIED RESIDUE MODRES 6QZZ MVA B 403 VAL MODIFIED RESIDUE HET MVA A 401 8 HET MVA B 401 8 HET MVA B 403 8 HET EME B 404 10 HET SAH A 501 26 HET SAH B 501 26 HETNAM MVA N-METHYLVALINE HETNAM EME N-METHYL-L-GLUTAMIC ACID HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE FORMUL 1 MVA 3(C6 H13 N O2) FORMUL 2 EME C6 H11 N O4 FORMUL 3 SAH 2(C14 H20 N6 O5 S) FORMUL 5 HOH *324(H2 O) HELIX 1 AA1 THR A 26 ALA A 36 1 11 HELIX 2 AA2 ASP A 45 ASN A 56 1 12 HELIX 3 AA3 TYR A 63 TYR A 66 5 4 HELIX 4 AA4 SER A 71 LYS A 89 1 19 HELIX 5 AA5 VAL A 105 GLU A 118 1 14 HELIX 6 AA6 SER A 129 CYS A 139 1 11 HELIX 7 AA7 ALA A 152 ARG A 158 1 7 HELIX 8 AA8 GLN A 172 VAL A 176 5 5 HELIX 9 AA9 LYS A 190 GLY A 203 1 14 HELIX 10 AB1 ALA A 229 ARG A 232 5 4 HELIX 11 AB2 GLU A 233 LYS A 238 1 6 HELIX 12 AB3 ASN A 257 LEU A 264 1 8 HELIX 13 AB4 PRO A 268 VAL A 272 5 5 HELIX 14 AB5 ARG A 296 GLN A 305 1 10 HELIX 15 AB6 LEU A 306 HIS A 309 5 4 HELIX 16 AB7 SER A 321 ASP A 334 1 14 HELIX 17 AB8 ASP A 334 ASP A 344 1 11 HELIX 18 AB9 ASP A 344 VAL A 352 1 9 HELIX 19 AC1 THR A 356 GLY A 366 1 11 HELIX 20 AC2 ASP A 367 LYS A 376 1 10 HELIX 21 AC3 GLU A 404 GLY A 411 1 8 HELIX 22 AC4 THR B 26 ALA B 36 1 11 HELIX 23 AC5 ASP B 45 ASN B 56 1 12 HELIX 24 AC6 TYR B 63 TYR B 66 5 4 HELIX 25 AC7 SER B 71 LYS B 89 1 19 HELIX 26 AC8 VAL B 105 GLU B 118 1 14 HELIX 27 AC9 SER B 129 CYS B 139 1 11 HELIX 28 AD1 ALA B 152 ARG B 158 1 7 HELIX 29 AD2 GLN B 172 VAL B 176 5 5 HELIX 30 AD3 LYS B 190 GLY B 203 1 14 HELIX 31 AD4 ALA B 229 ARG B 232 5 4 HELIX 32 AD5 GLU B 233 LYS B 238 1 6 HELIX 33 AD6 ASN B 257 LEU B 264 1 8 HELIX 34 AD7 PRO B 268 VAL B 272 5 5 HELIX 35 AD8 ARG B 296 GLN B 305 1 10 HELIX 36 AD9 LEU B 306 HIS B 309 5 4 HELIX 37 AE1 SER B 321 ASP B 334 1 14 HELIX 38 AE2 ASP B 334 ASP B 344 1 11 HELIX 39 AE3 ASP B 344 VAL B 352 1 9 HELIX 40 AE4 THR B 356 GLY B 366 1 11 HELIX 41 AE5 ASP B 367 LYS B 376 1 10 HELIX 42 AE6 PRO B 379 ASP B 384 1 6 HELIX 43 AE7 ILE B 407 SER B 412 1 6 SHEET 1 AA1 5 CYS A 59 ASP A 61 0 SHEET 2 AA1 5 LYS A 38 CYS A 42 1 N VAL A 39 O VAL A 60 SHEET 3 AA1 5 ASP A 92 PHE A 97 1 O VAL A 96 N PHE A 40 SHEET 4 AA1 5 SER A 11 GLY A 16 1 N VAL A 15 O GLY A 95 SHEET 5 AA1 5 ARG A 121 MET A 124 1 O ARG A 123 N ILE A 14 SHEET 1 AA210 VAL A 222 THR A 227 0 SHEET 2 AA210 PRO A 207 ILE A 212 -1 N HIS A 210 O ASP A 224 SHEET 3 AA210 THR A 245 ILE A 248 -1 O TYR A 247 N VAL A 209 SHEET 4 AA210 HIS A 167 PHE A 171 -1 N LEU A 168 O ILE A 248 SHEET 5 AA210 CYS A 147 GLU A 151 1 N LEU A 148 O VAL A 169 SHEET 6 AA210 CYS B 147 GLU B 151 -1 O THR B 149 N CYS A 147 SHEET 7 AA210 HIS B 167 PHE B 171 1 O VAL B 169 N LEU B 148 SHEET 8 AA210 THR B 245 ILE B 248 -1 O ILE B 248 N LEU B 168 SHEET 9 AA210 PRO B 207 ILE B 212 -1 N VAL B 209 O TYR B 247 SHEET 10 AA210 VAL B 222 THR B 227 -1 O TYR B 226 N VAL B 208 SHEET 1 AA3 5 CYS B 59 ASP B 61 0 SHEET 2 AA3 5 LYS B 38 CYS B 42 1 N VAL B 39 O VAL B 60 SHEET 3 AA3 5 ASP B 92 PHE B 97 1 O VAL B 96 N PHE B 40 SHEET 4 AA3 5 SER B 11 GLY B 16 1 N VAL B 15 O GLY B 95 SHEET 5 AA3 5 ARG B 121 MET B 124 1 O ARG B 123 N ILE B 14 LINK C TRP A 400 N MVA A 401 1555 1555 1.36 LINK C MVA A 401 N ILE A 402 1555 1555 1.34 LINK C TRP B 400 N MVA B 401 1555 1555 1.37 LINK C MVA B 401 N ILE B 402 1555 1555 1.35 LINK C ILE B 402 N MVA B 403 1555 1555 1.34 LINK C MVA B 403 N EME B 404 1555 1555 1.35 LINK C EME B 404 N GLY B 405 1555 1555 1.34 CISPEP 1 ASN A 144 PRO A 145 0 4.49 CISPEP 2 ASN A 144 PRO A 145 0 4.62 CISPEP 3 TYR A 280 PRO A 281 0 -2.44 CISPEP 4 ASN B 144 PRO B 145 0 3.73 CISPEP 5 ASN B 144 PRO B 145 0 5.91 CISPEP 6 TYR B 280 PRO B 281 0 -2.98 SITE 1 AC1 22 ILE A 19 TYR A 98 GLY A 99 HIS A 100 SITE 2 AC1 22 VAL A 103 PHE A 104 VAL A 105 SER A 129 SITE 3 AC1 22 ALA A 130 PHE A 171 GLN A 172 TYR A 211 SITE 4 AC1 22 ILE A 212 ALA A 213 MET A 215 GLY A 242 SITE 5 AC1 22 VAL A 243 SER A 244 THR A 245 HOH A 620 SITE 6 AC1 22 HOH A 652 EME B 404 SITE 1 AC2 22 MVA A 401 ILE B 19 TYR B 98 GLY B 99 SITE 2 AC2 22 HIS B 100 VAL B 103 PHE B 104 VAL B 105 SITE 3 AC2 22 SER B 129 ALA B 130 PHE B 171 GLN B 172 SITE 4 AC2 22 TYR B 211 ILE B 212 ALA B 213 MET B 215 SITE 5 AC2 22 GLY B 242 VAL B 243 SER B 244 THR B 245 SITE 6 AC2 22 HOH B 637 HOH B 675 CRYST1 164.002 91.723 85.222 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006097 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010902 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011734 0.00000