HEADER HYDROLASE 13-MAR-19 6R0K TITLE X-RAY STRUCTURE OF DANIO RERIO HISTONE DEACETYLASE 6 (HDAC6) CD2 IN TITLE 2 COMPLEX WITH A INHIBITOR SS208 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE DEACETYLASE 6; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 GENE: HDAC6; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEKS KEYWDS PROTEIN DEACETYLASE, HISTONE DEACETYLASE 6, ZINC-BINDING, ISOXAZOLE- KEYWDS 2 3-HYDROXAMATE ANALOGUES, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.BARINKA,K.USTINOVA,L.MOTLOVA,J.PAVLICEK REVDAT 2 24-JAN-24 6R0K 1 LINK REVDAT 1 09-OCT-19 6R0K 0 JRNL AUTH S.SHEN,M.HADLEY,K.USTINOVA,J.PAVLICEK,T.KNOX,S.NOONEPALLE, JRNL AUTH 2 M.T.TAVARES,C.A.ZIMPRICH,G.ZHANG,M.B.ROBERS,C.BARINKA, JRNL AUTH 3 A.P.KOZIKOWSKI,A.VILLAGRA JRNL TITL DISCOVERY OF A NEW ISOXAZOLE-3-HYDROXAMATE-BASED HISTONE JRNL TITL 2 DEACETYLASE 6 INHIBITOR SS-208 WITH ANTITUMOR ACTIVITY IN JRNL TITL 3 SYNGENEIC MELANOMA MOUSE MODELS. JRNL REF J.MED.CHEM. V. 62 8557 2019 JRNL REFN ISSN 0022-2623 JRNL PMID 31414801 JRNL DOI 10.1021/ACS.JMEDCHEM.9B00946 REMARK 2 REMARK 2 RESOLUTION. 1.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 136766 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.500 REMARK 3 FREE R VALUE TEST SET COUNT : 2100 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 9537 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.3440 REMARK 3 BIN FREE R VALUE SET COUNT : 146 REMARK 3 BIN FREE R VALUE : 0.3290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2764 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 49 REMARK 3 SOLVENT ATOMS : 396 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.63000 REMARK 3 B22 (A**2) : 2.54000 REMARK 3 B33 (A**2) : -0.91000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.033 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.033 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.035 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.898 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.977 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3124 ; 0.009 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4249 ; 1.646 ; 1.631 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 401 ; 6.557 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 176 ;33.141 ;20.795 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 508 ;12.834 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;17.036 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 391 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2500 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1534 ; 0.839 ; 1.408 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1936 ; 1.269 ; 2.096 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1589 ; 1.434 ; 1.584 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5053 ; 4.384 ;20.904 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 442 A 2476 REMARK 3 ORIGIN FOR THE GROUP (A): -16.1231 22.7022 -4.4311 REMARK 3 T TENSOR REMARK 3 T11: 0.0177 T22: 0.0054 REMARK 3 T33: 0.0125 T12: -0.0003 REMARK 3 T13: -0.0032 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 0.2202 L22: 0.0700 REMARK 3 L33: 0.1814 L12: 0.0069 REMARK 3 L13: 0.0044 L23: -0.0667 REMARK 3 S TENSOR REMARK 3 S11: 0.0121 S12: -0.0012 S13: 0.0172 REMARK 3 S21: -0.0010 S22: 0.0045 S23: -0.0128 REMARK 3 S31: 0.0115 S32: -0.0284 S33: -0.0166 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 6R0K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1292101231. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JAN-19 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918 REMARK 200 MONOCHROMATOR : SI111 DCM WITH SAGITAL BENDER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : POINTLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 138875 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.1300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.96000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.790 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 5EEK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19 % PEG 3350, 0.2 M KSCN, 0,1 M BIS REMARK 280 TRIS PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 42.01400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.94300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.01400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.94300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SCN A2006 LIES ON A SPECIAL POSITION. REMARK 375 C SCN A2006 LIES ON A SPECIAL POSITION. REMARK 375 N SCN A2006 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 440 REMARK 465 SER A 441 REMARK 465 ASP A 770 REMARK 465 HIS A 771 REMARK 465 LEU A 772 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 469 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 TYR A 678 CB - CG - CD2 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 460 89.35 -152.63 REMARK 500 THR A 600 -92.94 -131.21 REMARK 500 TYR A 637 -53.39 -127.41 REMARK 500 LEU A 685 -63.53 -125.59 REMARK 500 ALA A 702 76.22 -100.64 REMARK 500 GLU A 742 -110.61 -113.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A2002 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 610 O REMARK 620 2 ASP A 610 OD1 72.3 REMARK 620 3 ASP A 612 O 99.2 97.0 REMARK 620 4 HIS A 614 O 165.2 92.9 80.5 REMARK 620 5 SER A 633 OG 83.5 108.9 153.3 103.4 REMARK 620 6 LEU A 634 O 78.5 146.3 71.1 115.0 83.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A2001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 612 OD1 REMARK 620 2 HIS A 614 ND1 97.6 REMARK 620 3 ASP A 705 OD2 104.4 97.6 REMARK 620 4 JNN A2004 O1 165.8 91.0 85.4 REMARK 620 5 JNN A2004 O1 164.0 91.7 87.0 1.9 REMARK 620 6 JNN A2004 O2 89.1 94.7 160.2 78.9 77.2 REMARK 620 7 JNN A2004 O2 91.7 101.5 153.1 75.5 73.7 7.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A2003 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 623 O REMARK 620 2 ASP A 626 O 77.8 REMARK 620 3 VAL A 629 O 118.8 78.1 REMARK 620 4 TYR A 662 O 155.6 114.8 85.1 REMARK 620 5 HOH A2212 O 81.3 85.0 149.6 79.3 REMARK 620 6 HOH A2254 O 69.3 145.9 125.7 93.2 81.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JNN A 2004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SCN A 2005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SCN A 2006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SCN A 2007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SCN A 2008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SCN A 2009 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SCN A 2010 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SCN A 2011 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SCN A 2012 DBREF 6R0K A 440 798 UNP F8W4B7 F8W4B7_DANRE 440 798 SEQRES 1 A 359 SER SER PRO ILE THR GLY LEU VAL TYR ASP GLN ARG MET SEQRES 2 A 359 MET LEU HIS HIS ASN MET TRP ASP SER HIS HIS PRO GLU SEQRES 3 A 359 LEU PRO GLN ARG ILE SER ARG ILE PHE SER ARG HIS GLU SEQRES 4 A 359 GLU LEU ARG LEU LEU SER ARG CYS HIS ARG ILE PRO ALA SEQRES 5 A 359 ARG LEU ALA THR GLU GLU GLU LEU ALA LEU CYS HIS SER SEQRES 6 A 359 SER LYS HIS ILE SER ILE ILE LYS SER SER GLU HIS MET SEQRES 7 A 359 LYS PRO ARG ASP LEU ASN ARG LEU GLY ASP GLU TYR ASN SEQRES 8 A 359 SER ILE PHE ILE SER ASN GLU SER TYR THR CYS ALA LEU SEQRES 9 A 359 LEU ALA ALA GLY SER CYS PHE ASN SER ALA GLN ALA ILE SEQRES 10 A 359 LEU THR GLY GLN VAL ARG ASN ALA VAL ALA ILE VAL ARG SEQRES 11 A 359 PRO PRO GLY HIS HIS ALA GLU LYS ASP THR ALA CYS GLY SEQRES 12 A 359 PHE CYS PHE PHE ASN THR ALA ALA LEU THR ALA ARG TYR SEQRES 13 A 359 ALA GLN SER ILE THR ARG GLU SER LEU ARG VAL LEU ILE SEQRES 14 A 359 VAL ASP TRP ASP VAL HIS HIS GLY ASN GLY THR GLN HIS SEQRES 15 A 359 ILE PHE GLU GLU ASP ASP SER VAL LEU TYR ILE SER LEU SEQRES 16 A 359 HIS ARG TYR GLU ASP GLY ALA PHE PHE PRO ASN SER GLU SEQRES 17 A 359 ASP ALA ASN TYR ASP LYS VAL GLY LEU GLY LYS GLY ARG SEQRES 18 A 359 GLY TYR ASN VAL ASN ILE PRO TRP ASN GLY GLY LYS MET SEQRES 19 A 359 GLY ASP PRO GLU TYR MET ALA ALA PHE HIS HIS LEU VAL SEQRES 20 A 359 MET PRO ILE ALA ARG GLU PHE ALA PRO GLU LEU VAL LEU SEQRES 21 A 359 VAL SER ALA GLY PHE ASP ALA ALA ARG GLY ASP PRO LEU SEQRES 22 A 359 GLY GLY PHE GLN VAL THR PRO GLU GLY TYR ALA HIS LEU SEQRES 23 A 359 THR HIS GLN LEU MET SER LEU ALA ALA GLY ARG VAL LEU SEQRES 24 A 359 ILE ILE LEU GLU GLY GLY TYR ASN LEU THR SER ILE SER SEQRES 25 A 359 GLU SER MET SER MET CYS THR SER MET LEU LEU GLY ASP SEQRES 26 A 359 SER PRO PRO SER LEU ASP HIS LEU THR PRO LEU LYS THR SEQRES 27 A 359 SER ALA THR VAL SER ILE ASN ASN VAL LEU ARG ALA HIS SEQRES 28 A 359 ALA PRO PHE TRP SER SER LEU ARG HET ZN A2001 1 HET K A2002 1 HET K A2003 1 HET JNN A2004 44 HET SCN A2005 3 HET SCN A2006 6 HET SCN A2007 3 HET SCN A2008 6 HET SCN A2009 6 HET SCN A2010 3 HET SCN A2011 3 HET SCN A2012 3 HETNAM ZN ZINC ION HETNAM K POTASSIUM ION HETNAM JNN 5-[2-[(3,4-DICHLOROPHENYL)CARBONYLAMINO]ETHYL]-~{N}- HETNAM 2 JNN OXIDANYL-1,2-OXAZOLE-3-CARBOXAMIDE HETNAM SCN THIOCYANATE ION FORMUL 2 ZN ZN 2+ FORMUL 3 K 2(K 1+) FORMUL 5 JNN C13 H11 CL2 N3 O4 FORMUL 6 SCN 8(C N S 1-) FORMUL 14 HOH *396(H2 O) HELIX 1 AA1 ASP A 449 HIS A 455 5 7 HELIX 2 AA2 PRO A 467 LEU A 480 1 14 HELIX 3 AA3 LEU A 482 CYS A 486 5 5 HELIX 4 AA4 THR A 495 ALA A 500 1 6 HELIX 5 AA5 SER A 504 SER A 514 1 11 HELIX 6 AA6 GLU A 515 MET A 517 5 3 HELIX 7 AA7 LYS A 518 ASP A 527 1 10 HELIX 8 AA8 GLU A 537 THR A 558 1 22 HELIX 9 AA9 ASN A 587 ILE A 599 1 13 HELIX 10 AB1 GLY A 616 PHE A 623 1 8 HELIX 11 AB2 GLU A 638 ALA A 641 5 4 HELIX 12 AB3 SER A 646 ASN A 650 5 5 HELIX 13 AB4 LEU A 656 ARG A 660 5 5 HELIX 14 AB5 GLY A 674 LEU A 685 1 12 HELIX 15 AB6 LEU A 685 ALA A 694 1 10 HELIX 16 AB7 THR A 718 MET A 730 1 13 HELIX 17 AB8 SER A 731 GLY A 735 5 5 HELIX 18 AB9 ASN A 746 LEU A 762 1 17 HELIX 19 AC1 LYS A 776 ALA A 791 1 16 HELIX 20 AC2 TRP A 794 ARG A 798 5 5 SHEET 1 AA1 8 HIS A 487 ARG A 488 0 SHEET 2 AA1 8 THR A 444 VAL A 447 1 N THR A 444 O HIS A 487 SHEET 3 AA1 8 ASN A 563 ALA A 566 1 O ASN A 563 N GLY A 445 SHEET 4 AA1 8 VAL A 737 LEU A 741 1 O ILE A 739 N ALA A 566 SHEET 5 AA1 8 LEU A 697 ALA A 702 1 N VAL A 700 O ILE A 740 SHEET 6 AA1 8 VAL A 606 ASP A 610 1 N LEU A 607 O LEU A 699 SHEET 7 AA1 8 VAL A 629 ARG A 636 1 O ILE A 632 N ASP A 610 SHEET 8 AA1 8 ASN A 663 TRP A 668 1 O VAL A 664 N TYR A 631 LINK O ASP A 610 K K A2002 1555 1555 2.78 LINK OD1 ASP A 610 K K A2002 1555 1555 2.64 LINK OD1 ASP A 612 ZN ZN A2001 1555 1555 2.05 LINK O ASP A 612 K K A2002 1555 1555 2.52 LINK ND1 HIS A 614 ZN ZN A2001 1555 1555 2.09 LINK O HIS A 614 K K A2002 1555 1555 2.67 LINK O PHE A 623 K K A2003 1555 1555 2.77 LINK O ASP A 626 K K A2003 1555 1555 2.94 LINK O VAL A 629 K K A2003 1555 1555 2.67 LINK OG SER A 633 K K A2002 1555 1555 2.68 LINK O LEU A 634 K K A2002 1555 1555 2.64 LINK O TYR A 662 K K A2003 1555 1555 2.83 LINK OD2 ASP A 705 ZN ZN A2001 1555 1555 2.00 LINK ZN ZN A2001 O1 BJNN A2004 1555 1555 2.31 LINK ZN ZN A2001 O1 AJNN A2004 1555 1555 2.21 LINK ZN ZN A2001 O2 AJNN A2004 1555 1555 2.00 LINK ZN ZN A2001 O2 BJNN A2004 1555 1555 2.03 LINK K K A2003 O HOH A2212 1555 1555 2.68 LINK K K A2003 O HOH A2254 1555 1555 2.95 CISPEP 1 ARG A 569 PRO A 570 0 -3.80 CISPEP 2 PHE A 643 PRO A 644 0 8.71 SITE 1 AC1 4 ASP A 612 HIS A 614 ASP A 705 JNN A2004 SITE 1 AC2 5 ASP A 610 ASP A 612 HIS A 614 SER A 633 SITE 2 AC2 5 LEU A 634 SITE 1 AC3 6 PHE A 623 ASP A 626 VAL A 629 TYR A 662 SITE 2 AC3 6 HOH A2212 HOH A2254 SITE 1 AC4 16 HIS A 463 PRO A 464 SER A 531 HIS A 573 SITE 2 AC4 16 HIS A 574 GLY A 582 PHE A 583 ARG A 601 SITE 3 AC4 16 ASP A 612 HIS A 614 PHE A 643 ASP A 705 SITE 4 AC4 16 LEU A 712 TYR A 745 ZN A2001 HOH A2261 SITE 1 AC5 7 ASN A 457 HIS A 463 ARG A 520 SER A 531 SITE 2 AC5 7 ILE A 532 PHE A 533 SCN A2007 SITE 1 AC6 3 TRP A 459 PRO A 519 ASN A 523 SITE 1 AC7 7 ARG A 524 ASP A 527 ILE A 532 SCN A2005 SITE 2 AC7 7 HOH A2173 HOH A2233 HOH A2331 SITE 1 AC8 8 SER A 475 GLU A 478 ARG A 660 HOH A2115 SITE 2 AC8 8 HOH A2131 HOH A2265 HOH A2338 HOH A2444 SITE 1 AC9 8 GLN A 620 GLU A 624 LYS A 653 VAL A 654 SITE 2 AC9 8 GLY A 655 ASN A 663 HOH A2149 HOH A2359 SITE 1 AD1 6 GLN A 554 THR A 558 GLN A 560 ASP A 639 SITE 2 AD1 6 HOH A2283 HOH A2358 SITE 1 AD2 3 SER A 505 LYS A 506 SER A 731 SITE 1 AD3 3 ARG A 451 ALA A 491 HOH A2368 CRYST1 84.028 93.886 51.679 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011901 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010651 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019350 0.00000