HEADER TRANSCRIPTION 13-MAR-19 6R0N TITLE HISTONE FOLD DOMAIN OF ATNF-YB2/NF-YC3 IN I2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NF-YB2; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: NF-YC3; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: AXX17_AT5G46140; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 10 ORGANISM_COMMON: THALE CRESS; SOURCE 11 ORGANISM_TAXID: 3702; SOURCE 12 GENE: AXX17_AT1G49320; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NF-Y, TRANSCRIPTION FACTOR, ARABIDOPSIS, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR A.CHAVES-SANJUAN,N.GNESUTTA,A.BERNARDINI,F.FORNARA,M.NARDINI, AUTHOR 2 R.MANTOVANI REVDAT 4 24-JAN-24 6R0N 1 REMARK REVDAT 3 03-MAR-21 6R0N 1 JRNL REVDAT 2 30-DEC-20 6R0N 1 JRNL REVDAT 1 30-SEP-20 6R0N 0 JRNL AUTH A.CHAVES-SANJUAN,N.GNESUTTA,A.GOBBINI,D.MARTIGNAGO, JRNL AUTH 2 A.BERNARDINI,F.FORNARA,R.MANTOVANI,M.NARDINI JRNL TITL STRUCTURAL DETERMINANTS FOR NF-Y SUBUNIT ORGANIZATION AND JRNL TITL 2 NF-Y/DNA ASSOCIATION IN PLANTS. JRNL REF PLANT J. V. 105 49 2021 JRNL REFN ESSN 1365-313X JRNL PMID 33098724 JRNL DOI 10.1111/TPJ.15038 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 11898 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.850 REMARK 3 FREE R VALUE TEST SET COUNT : 577 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.3500 - 3.3300 1.00 2876 160 0.1587 0.1732 REMARK 3 2 3.3300 - 2.6500 1.00 2836 143 0.2375 0.2616 REMARK 3 3 2.6500 - 2.3100 0.99 2813 130 0.2421 0.2529 REMARK 3 4 2.3100 - 2.1000 0.98 2796 144 0.3177 0.3277 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.214 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.196 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 1441 REMARK 3 ANGLE : 1.345 1934 REMARK 3 CHIRALITY : 0.070 217 REMARK 3 PLANARITY : 0.008 247 REMARK 3 DIHEDRAL : 28.257 568 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 26 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.5970 -22.2907 15.3620 REMARK 3 T TENSOR REMARK 3 T11: 1.1110 T22: 1.0379 REMARK 3 T33: 1.1623 T12: -0.1078 REMARK 3 T13: 0.0142 T23: 0.2611 REMARK 3 L TENSOR REMARK 3 L11: 0.2217 L22: 0.6654 REMARK 3 L33: 0.1859 L12: -0.3098 REMARK 3 L13: -0.1755 L23: 0.3536 REMARK 3 S TENSOR REMARK 3 S11: -0.0921 S12: 1.2096 S13: 0.4612 REMARK 3 S21: -0.6606 S22: 0.0385 S23: 2.0867 REMARK 3 S31: -1.1048 S32: -1.3103 S33: -0.0037 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 34 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.5737 -27.9089 22.4151 REMARK 3 T TENSOR REMARK 3 T11: 0.7181 T22: 0.6210 REMARK 3 T33: 0.7338 T12: -0.0763 REMARK 3 T13: -0.0228 T23: 0.0831 REMARK 3 L TENSOR REMARK 3 L11: 0.4613 L22: 0.1188 REMARK 3 L33: 0.5280 L12: 0.0475 REMARK 3 L13: 0.1781 L23: 0.1621 REMARK 3 S TENSOR REMARK 3 S11: -0.0504 S12: 0.3823 S13: -1.8763 REMARK 3 S21: -0.3030 S22: 0.5690 S23: -0.2015 REMARK 3 S31: 1.9072 S32: 0.3095 S33: 0.0135 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 44 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.7182 -12.1837 15.8735 REMARK 3 T TENSOR REMARK 3 T11: 0.4164 T22: 0.4632 REMARK 3 T33: 0.4767 T12: 0.0363 REMARK 3 T13: -0.0064 T23: 0.0538 REMARK 3 L TENSOR REMARK 3 L11: 2.5670 L22: 2.3126 REMARK 3 L33: 1.8408 L12: -0.8534 REMARK 3 L13: 1.2479 L23: 0.1804 REMARK 3 S TENSOR REMARK 3 S11: -0.2226 S12: -0.0549 S13: -0.0074 REMARK 3 S21: 0.4333 S22: 0.2782 S23: -0.1386 REMARK 3 S31: -0.5521 S32: -0.4263 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 101 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.1187 -15.1092 11.3344 REMARK 3 T TENSOR REMARK 3 T11: 0.5463 T22: 0.7482 REMARK 3 T33: 0.5799 T12: 0.0257 REMARK 3 T13: -0.0679 T23: 0.1175 REMARK 3 L TENSOR REMARK 3 L11: 1.6254 L22: 1.0697 REMARK 3 L33: 0.8082 L12: 0.6879 REMARK 3 L13: 0.2571 L23: -0.6781 REMARK 3 S TENSOR REMARK 3 S11: -0.4083 S12: -0.2648 S13: 0.0623 REMARK 3 S21: 0.3685 S22: -0.1795 S23: -0.4739 REMARK 3 S31: 0.0879 S32: 2.1751 S33: -0.0166 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 69 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.9411 -16.1393 6.3686 REMARK 3 T TENSOR REMARK 3 T11: 0.4882 T22: 0.5420 REMARK 3 T33: 0.5753 T12: -0.0280 REMARK 3 T13: -0.0009 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 2.2769 L22: 1.7780 REMARK 3 L33: 2.1502 L12: 1.5058 REMARK 3 L13: -0.1014 L23: 1.1089 REMARK 3 S TENSOR REMARK 3 S11: 0.3047 S12: 0.5795 S13: -0.2293 REMARK 3 S21: -0.1990 S22: -0.4319 S23: 0.2788 REMARK 3 S31: 0.1240 S32: -0.4056 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 91 THROUGH 135 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.7497 -18.7464 28.1869 REMARK 3 T TENSOR REMARK 3 T11: 0.6134 T22: 0.5650 REMARK 3 T33: 0.4950 T12: 0.0864 REMARK 3 T13: 0.0122 T23: 0.0798 REMARK 3 L TENSOR REMARK 3 L11: 2.3387 L22: 2.5891 REMARK 3 L33: 1.6770 L12: 0.6135 REMARK 3 L13: 1.7016 L23: -0.7512 REMARK 3 S TENSOR REMARK 3 S11: 0.0868 S12: -0.7216 S13: -0.1781 REMARK 3 S21: 0.7942 S22: 0.0103 S23: 0.1739 REMARK 3 S31: -0.3425 S32: -0.0171 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 136 THROUGH 148 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.0596 -8.9858 28.0997 REMARK 3 T TENSOR REMARK 3 T11: 1.3342 T22: 1.0735 REMARK 3 T33: 0.7984 T12: 0.2894 REMARK 3 T13: 0.0569 T23: -0.0227 REMARK 3 L TENSOR REMARK 3 L11: 0.1077 L22: 0.1010 REMARK 3 L33: 0.1918 L12: -0.1076 REMARK 3 L13: -0.0648 L23: 0.0292 REMARK 3 S TENSOR REMARK 3 S11: -0.2710 S12: -2.2722 S13: 1.0263 REMARK 3 S21: 1.2781 S22: 0.2839 S23: 0.4371 REMARK 3 S31: -0.9874 S32: -0.2165 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6R0N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1292101206. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999996 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11924 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 49.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.300 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5G49 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM NACL, 50 MM TRIS-HCL PH 8.0 AND REMARK 280 2 MM DTT, MICRODIALYSIS, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 10.63848 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.70800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 48.26171 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 10.63848 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 28.70800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 48.26171 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 336 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 339 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 203 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 20 REMARK 465 SER A 21 REMARK 465 HIS A 22 REMARK 465 MET A 23 REMARK 465 SER A 24 REMARK 465 PRO A 25 REMARK 465 MET B 54 REMARK 465 THR B 55 REMARK 465 GLN B 56 REMARK 465 PHE B 57 REMARK 465 LYS B 58 REMARK 465 GLU B 59 REMARK 465 ILE B 60 REMARK 465 GLU B 61 REMARK 465 LYS B 62 REMARK 465 THR B 63 REMARK 465 THR B 64 REMARK 465 ASP B 65 REMARK 465 PHE B 66 REMARK 465 LYS B 67 REMARK 465 ASN B 68 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 30 O LYS B 78 1.93 REMARK 500 NZ LYS A 43 O HOH A 301 2.00 REMARK 500 OD2 ASP A 54 CE LYS B 126 2.11 REMARK 500 OD1 ASP A 89 O HOH A 302 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O ASN B 119 NZ LYS B 120 2656 1.80 REMARK 500 NH1 ARG A 39 OD1 ASP B 144 4545 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 83 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG B 121 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG B 87 -106.45 -115.93 REMARK 500 LYS B 120 56.84 34.05 REMARK 500 ILE B 138 -6.00 -56.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 203 DBREF1 6R0N A 24 116 UNP A0A178UPH7_ARATH DBREF2 6R0N A A0A178UPH7 24 116 DBREF1 6R0N B 55 148 UNP A0A178WGU5_ARATH DBREF2 6R0N B A0A178WGU5 55 148 SEQADV 6R0N GLY A 20 UNP A0A178UPH EXPRESSION TAG SEQADV 6R0N SER A 21 UNP A0A178UPH EXPRESSION TAG SEQADV 6R0N HIS A 22 UNP A0A178UPH EXPRESSION TAG SEQADV 6R0N MET A 23 UNP A0A178UPH EXPRESSION TAG SEQADV 6R0N MET B 54 UNP A0A178WGU INITIATING METHIONINE SEQRES 1 A 97 GLY SER HIS MET SER PRO ARG GLU GLN ASP ARG PHE LEU SEQRES 2 A 97 PRO ILE ALA ASN VAL SER ARG ILE MET LYS LYS ALA LEU SEQRES 3 A 97 PRO ALA ASN ALA LYS ILE SER LYS ASP ALA LYS GLU THR SEQRES 4 A 97 MET GLN GLU CYS VAL SER GLU PHE ILE SER PHE VAL THR SEQRES 5 A 97 GLY GLU ALA SER ASP LYS CYS GLN LYS GLU LYS ARG LYS SEQRES 6 A 97 THR ILE ASN GLY ASP ASP LEU LEU TRP ALA MET THR THR SEQRES 7 A 97 LEU GLY PHE GLU ASP TYR VAL GLU PRO LEU LYS VAL TYR SEQRES 8 A 97 LEU GLN ARG PHE ARG GLU SEQRES 1 B 95 MET THR GLN PHE LYS GLU ILE GLU LYS THR THR ASP PHE SEQRES 2 B 95 LYS ASN HIS SER LEU PRO LEU ALA ARG ILE LYS LYS ILE SEQRES 3 B 95 MET LYS ALA ASP GLU ASP VAL ARG MET ILE SER ALA GLU SEQRES 4 B 95 ALA PRO VAL VAL PHE ALA ARG ALA CYS GLU MET PHE ILE SEQRES 5 B 95 LEU GLU LEU THR LEU ARG SER TRP ASN HIS THR GLU GLU SEQRES 6 B 95 ASN LYS ARG ARG THR LEU GLN LYS ASN ASP ILE ALA ALA SEQRES 7 B 95 ALA VAL THR ARG THR ASP ILE PHE ASP PHE LEU VAL ASP SEQRES 8 B 95 ILE VAL PRO ARG HET GOL A 201 6 HET GOL A 202 6 HET GOL A 203 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 3(C3 H8 O3) FORMUL 6 HOH *58(H2 O) HELIX 1 AA1 PRO A 33 LEU A 45 1 13 HELIX 2 AA2 SER A 52 GLU A 81 1 30 HELIX 3 AA3 ASN A 87 LEU A 98 1 12 HELIX 4 AA4 PHE A 100 GLU A 116 1 17 HELIX 5 AA5 PRO B 72 ALA B 82 1 11 HELIX 6 AA6 ALA B 91 ASN B 119 1 29 HELIX 7 AA7 GLN B 125 THR B 136 1 12 HELIX 8 AA8 ASP B 137 VAL B 143 5 7 SHEET 1 AA1 2 LYS A 50 ILE A 51 0 SHEET 2 AA1 2 THR B 123 LEU B 124 1 O LEU B 124 N LYS A 50 SHEET 1 AA2 2 THR A 85 ILE A 86 0 SHEET 2 AA2 2 MET B 88 ILE B 89 1 O MET B 88 N ILE A 86 SITE 1 AC1 8 LYS A 50 ILE A 51 SER A 52 LYS A 53 SITE 2 AC1 8 PHE A 69 GLY A 72 GLU A 73 ASP A 76 SITE 1 AC2 3 ASP A 89 LYS A 108 HOH A 327 SITE 1 AC3 5 ARG A 26 GLN A 28 GLU A 57 GLN A 60 SITE 2 AC3 5 GLU A 61 CRYST1 37.194 57.416 97.827 90.00 99.36 90.00 I 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026886 0.000000 0.004434 0.00000 SCALE2 0.000000 0.017417 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010360 0.00000