HEADER FLAVOPROTEIN 14-MAR-19 6R1E TITLE STRUCTURE OF DODECIN FROM STREPTOMYCES COELICOLOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: DODECIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: N-FORMYLATED N-TERMINUS SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES COELICOLOR (STRAIN ATCC BAA-471 / SOURCE 3 A3(2) / M145); SOURCE 4 ORGANISM_TAXID: 100226; SOURCE 5 GENE: SCO0915; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: GOLD(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A(+) KEYWDS FLAVIN STORAGE, DODECAMER, PROTEIN COMPLEX, FLAVOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.-O.ESSEN,B.SANDER REVDAT 5 31-JAN-24 6R1E 1 REMARK REVDAT 4 07-DEC-22 6R1E 1 REMARK SEQADV REVDAT 3 09-OCT-19 6R1E 1 JRNL REVDAT 2 07-AUG-19 6R1E 1 JRNL REVDAT 1 27-MAR-19 6R1E 0 JRNL AUTH F.BOURDEAUX,P.LUDWIG,K.PAITHANKAR,B.SANDER,L.O.ESSEN, JRNL AUTH 2 M.GRININGER,M.MACK JRNL TITL COMPARATIVE BIOCHEMICAL AND STRUCTURAL ANALYSIS OF THE JRNL TITL 2 FLAVIN-BINDING DODECINS FROMSTREPTOMYCES JRNL TITL 3 DAVAONENSISANDSTREPTOMYCES COELICOLORREVEALS STRIKING JRNL TITL 4 DIFFERENCES WITH REGARD TO MULTIMERIZATION. JRNL REF MICROBIOLOGY (READING, V. 165 1095 2019 JRNL REF 2 ENGL.) JRNL REFN ESSN 1465-2080 JRNL PMID 31339487 JRNL DOI 10.1099/MIC.0.000835 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0218 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 11.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 11583 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.300 REMARK 3 FREE R VALUE TEST SET COUNT : 277 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 853 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2200 REMARK 3 BIN FREE R VALUE SET COUNT : 0 REMARK 3 BIN FREE R VALUE : 0.0000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2232 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 354 REMARK 3 SOLVENT ATOMS : 90 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.907 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.307 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.235 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.074 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.926 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.887 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2624 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2252 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3604 ; 1.847 ; 2.078 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5184 ; 0.887 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 276 ; 6.793 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 120 ;28.299 ;23.667 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 384 ;17.382 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;13.775 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 386 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2736 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 548 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1124 ; 2.585 ; 5.133 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1123 ; 2.586 ; 5.130 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1396 ; 4.058 ; 7.669 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1397 ; 4.057 ; 7.673 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1500 ; 2.603 ; 5.327 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1477 ; 2.611 ; 5.322 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2173 ; 3.961 ; 7.915 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3140 ; 6.489 ;54.284 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3128 ; 6.486 ;54.221 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 6 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 15 84 B 15 84 2074 0.03 0.05 REMARK 3 2 A 15 84 C 15 84 2085 0.00 0.05 REMARK 3 3 A 15 84 D 15 84 2074 0.04 0.05 REMARK 3 4 B 15 84 C 15 84 2074 0.03 0.05 REMARK 3 5 B 15 84 D 15 84 2069 0.04 0.05 REMARK 3 6 C 15 84 D 15 84 2074 0.04 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6R1E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1292101268. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : ENRAF-NONIUS FR591 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54179 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11644 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 11.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 5.750 REMARK 200 R MERGE (I) : 0.03600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 28.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.40300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.720 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2YIZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG4000, 0.1 M NAOAC, 0.2 M AS, REMARK 280 16.5 MG/ML SCDODECIN, PH 4.8, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 46.47250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 26.83091 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 75.94833 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 46.47250 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 26.83091 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 75.94833 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 46.47250 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 26.83091 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 75.94833 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 46.47250 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 26.83091 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 75.94833 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 46.47250 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 26.83091 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 75.94833 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 46.47250 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 26.83091 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 75.94833 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 53.66182 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 151.89667 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 53.66182 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 151.89667 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 53.66182 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 151.89667 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 53.66182 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 151.89667 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 53.66182 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 151.89667 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 53.66182 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 151.89667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 47750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -651.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -92.94500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -46.47250 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -80.49273 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 B 105 LIES ON A SPECIAL POSITION. REMARK 375 O3 SO4 B 105 LIES ON A SPECIAL POSITION. REMARK 375 S SO4 B 106 LIES ON A SPECIAL POSITION. REMARK 375 O3 SO4 B 106 LIES ON A SPECIAL POSITION. REMARK 375 S SO4 C 106 LIES ON A SPECIAL POSITION. REMARK 375 O2 SO4 C 106 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 16 99.96 -46.40 REMARK 500 GLN A 58 144.05 -172.14 REMARK 500 SER B 16 100.34 -46.42 REMARK 500 SER C 16 100.34 -46.41 REMARK 500 GLN C 58 144.10 -172.45 REMARK 500 SER D 16 99.75 -45.78 REMARK 500 GLN D 58 144.24 -172.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 222 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH D 223 DISTANCE = 6.19 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue COA A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue COA B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue COA C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN C 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL C 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA C 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue COA D 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL D 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA D 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide FOR B 14 and MET B REMARK 800 15 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide FOR C 14 and MET C REMARK 800 15 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide FOR D 14 and MET D REMARK 800 15 DBREF 6R1E A 15 84 UNP Q9RCZ5 Q9RCZ5_STRCO 15 84 DBREF 6R1E B 15 84 UNP Q9RCZ5 Q9RCZ5_STRCO 15 84 DBREF 6R1E C 15 84 UNP Q9RCZ5 Q9RCZ5_STRCO 15 84 DBREF 6R1E D 15 84 UNP Q9RCZ5 Q9RCZ5_STRCO 15 84 SEQADV 6R1E FOR A 14 UNP Q9RCZ5 MODIFIED RESIDUE SEQADV 6R1E FOR B 14 UNP Q9RCZ5 MODIFIED RESIDUE SEQADV 6R1E FOR C 14 UNP Q9RCZ5 MODIFIED RESIDUE SEQADV 6R1E FOR D 14 UNP Q9RCZ5 MODIFIED RESIDUE SEQRES 1 A 71 FOR MET SER ASN HIS THR TYR ARG VAL THR GLU VAL VAL SEQRES 2 A 71 GLY THR SER PRO ASP GLY VAL ASP GLN ALA VAL ARG ASN SEQRES 3 A 71 ALA VAL THR ARG ALA SER GLN THR LEU ARG LYS LEU ASP SEQRES 4 A 71 TRP PHE GLU VAL THR GLN VAL ARG GLY GLN ILE GLU ASP SEQRES 5 A 71 GLY GLN VAL ALA HIS TRP GLN VAL GLY LEU LYS LEU GLY SEQRES 6 A 71 PHE ARG LEU GLU GLU SER SEQRES 1 B 71 FOR MET SER ASN HIS THR TYR ARG VAL THR GLU VAL VAL SEQRES 2 B 71 GLY THR SER PRO ASP GLY VAL ASP GLN ALA VAL ARG ASN SEQRES 3 B 71 ALA VAL THR ARG ALA SER GLN THR LEU ARG LYS LEU ASP SEQRES 4 B 71 TRP PHE GLU VAL THR GLN VAL ARG GLY GLN ILE GLU ASP SEQRES 5 B 71 GLY GLN VAL ALA HIS TRP GLN VAL GLY LEU LYS LEU GLY SEQRES 6 B 71 PHE ARG LEU GLU GLU SER SEQRES 1 C 71 FOR MET SER ASN HIS THR TYR ARG VAL THR GLU VAL VAL SEQRES 2 C 71 GLY THR SER PRO ASP GLY VAL ASP GLN ALA VAL ARG ASN SEQRES 3 C 71 ALA VAL THR ARG ALA SER GLN THR LEU ARG LYS LEU ASP SEQRES 4 C 71 TRP PHE GLU VAL THR GLN VAL ARG GLY GLN ILE GLU ASP SEQRES 5 C 71 GLY GLN VAL ALA HIS TRP GLN VAL GLY LEU LYS LEU GLY SEQRES 6 C 71 PHE ARG LEU GLU GLU SER SEQRES 1 D 71 FOR MET SER ASN HIS THR TYR ARG VAL THR GLU VAL VAL SEQRES 2 D 71 GLY THR SER PRO ASP GLY VAL ASP GLN ALA VAL ARG ASN SEQRES 3 D 71 ALA VAL THR ARG ALA SER GLN THR LEU ARG LYS LEU ASP SEQRES 4 D 71 TRP PHE GLU VAL THR GLN VAL ARG GLY GLN ILE GLU ASP SEQRES 5 D 71 GLY GLN VAL ALA HIS TRP GLN VAL GLY LEU LYS LEU GLY SEQRES 6 D 71 PHE ARG LEU GLU GLU SER HET FOR A 14 2 HET FOR B 14 2 HET FOR C 14 2 HET FOR D 14 2 HET FMN A 101 31 HET FMN A 102 31 HET COA A 103 48 HET CL A 104 1 HET NA A 105 1 HET SO4 A 106 5 HET SO4 A 107 5 HET FMN B 101 31 HET COA B 102 48 HET CL B 103 1 HET NA B 104 1 HET SO4 B 105 5 HET SO4 B 106 5 HET COA C 101 48 HET FMN C 102 31 HET CL C 103 1 HET NA C 104 1 HET SO4 C 105 5 HET SO4 C 106 5 HET COA D 101 48 HET CL D 102 1 HET NA D 103 1 HETNAM FOR FORMYL GROUP HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM COA COENZYME A HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETNAM SO4 SULFATE ION HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 1 FOR 4(C H2 O) FORMUL 5 FMN 4(C17 H21 N4 O9 P) FORMUL 7 COA 4(C21 H36 N7 O16 P3 S) FORMUL 8 CL 4(CL 1-) FORMUL 9 NA 4(NA 1+) FORMUL 10 SO4 6(O4 S 2-) FORMUL 27 HOH *90(H2 O) HELIX 1 AA1 GLY A 32 LEU A 48 1 17 HELIX 2 AA2 GLY B 32 LEU B 48 1 17 HELIX 3 AA3 GLY C 32 LEU C 48 1 17 HELIX 4 AA4 GLY D 32 LEU D 48 1 17 SHEET 1 A 3 TYR A 20 SER A 29 0 SHEET 2 A 3 TRP A 71 ARG A 80 -1 SHEET 3 A 3 LEU A 51 VAL A 56 -1 SHEET 1 B 2 GLN A 58 GLU A 64 0 SHEET 2 B 2 GLN A 67 GLY A 74 -1 SHEET 1 C 3 TYR B 20 SER B 29 0 SHEET 2 C 3 TRP B 71 ARG B 80 -1 SHEET 3 C 3 LEU B 51 VAL B 56 -1 SHEET 1 D 2 GLN B 58 GLU B 64 0 SHEET 2 D 2 GLN B 67 GLY B 74 -1 SHEET 1 E 3 TYR C 20 SER C 29 0 SHEET 2 E 3 TRP C 71 ARG C 80 -1 SHEET 3 E 3 LEU C 51 VAL C 56 -1 SHEET 1 F 2 GLN C 58 GLU C 64 0 SHEET 2 F 2 GLN C 67 GLY C 74 -1 SHEET 1 G 3 TYR D 20 SER D 29 0 SHEET 2 G 3 TRP D 71 ARG D 80 -1 SHEET 3 G 3 LEU D 51 VAL D 56 -1 SHEET 1 H 2 GLN D 58 GLU D 64 0 SHEET 2 H 2 GLN D 67 GLY D 74 -1 LINK C FOR A 14 N MET A 15 1555 1555 1.37 LINK C FOR B 14 N MET B 15 1555 1555 1.36 LINK C FOR C 14 N MET C 15 1555 1555 1.37 LINK C FOR D 14 N MET D 15 1555 1555 1.36 SITE 1 AC1 11 GLN A 72 ARG B 60 GLN B 62 GLN B 72 SITE 2 AC1 11 FMN B 101 MET D 15 HIS D 18 TYR D 20 SITE 3 AC1 11 ASP D 52 TRP D 53 ARG D 80 SITE 1 AC2 13 MET A 15 HIS A 18 TYR A 20 ASP A 52 SITE 2 AC2 13 TRP A 53 ARG A 80 HOH A 216 HOH A 217 SITE 3 AC2 13 GLN C 72 FMN C 102 ARG D 60 GLN D 62 SITE 4 AC2 13 GLN D 72 SITE 1 AC3 18 ARG A 43 THR A 47 LEU A 48 ARG A 49 SITE 2 AC3 18 PHE A 79 ARG A 80 GLU A 82 HOH A 218 SITE 3 AC3 18 ARG C 21 LEU C 81 COA C 101 ARG D 21 SITE 4 AC3 18 THR D 23 ALA D 44 LEU D 48 LEU D 81 SITE 5 AC3 18 COA D 101 HOH D 204 SITE 1 AC4 2 LYS A 50 HOH A 220 SITE 1 AC5 1 ASP A 65 SITE 1 AC6 3 LYS A 76 LYS C 76 LYS D 76 SITE 1 AC7 11 ARG A 60 GLN A 72 FMN A 101 MET B 15 SITE 2 AC7 11 HIS B 18 TYR B 20 ASP B 52 TRP B 53 SITE 3 AC7 11 GLN B 72 ARG B 80 HOH B 216 SITE 1 AC8 13 ARG B 21 THR B 23 ARG B 43 ALA B 44 SITE 2 AC8 13 THR B 47 LEU B 48 ARG B 49 PHE B 79 SITE 3 AC8 13 ARG B 80 LEU B 81 GLU B 82 HOH B 202 SITE 4 AC8 13 HOH B 217 SITE 1 AC9 1 LYS B 50 SITE 1 AD1 1 ASP B 65 SITE 1 AD2 3 ARG B 21 VAL B 22 GLU B 24 SITE 1 AD3 1 LYS B 76 SITE 1 AD4 18 ARG A 21 THR A 23 ALA A 44 LEU A 48 SITE 2 AD4 18 LEU A 81 COA A 103 HOH A 201 ARG C 43 SITE 3 AD4 18 THR C 47 LEU C 48 ARG C 49 PHE C 79 SITE 4 AD4 18 ARG C 80 GLU C 82 HOH C 216 ARG D 21 SITE 5 AD4 18 LEU D 81 COA D 101 SITE 1 AD5 11 FMN A 102 MET C 15 HIS C 18 TYR C 20 SITE 2 AD5 11 ASP C 52 TRP C 53 ARG C 60 GLN C 62 SITE 3 AD5 11 GLN C 72 ARG C 80 GLN D 72 SITE 1 AD6 1 LYS C 50 SITE 1 AD7 1 ASP C 65 SITE 1 AD8 13 ARG A 21 THR A 23 GLU A 24 HOH A 206 SITE 2 AD8 13 ARG C 21 VAL C 22 THR C 23 GLU C 24 SITE 3 AD8 13 HOH C 209 ARG D 21 THR D 23 GLU D 24 SITE 4 AD8 13 HOH D 207 SITE 1 AD9 17 ARG A 21 LEU A 81 COA A 103 ARG C 21 SITE 2 AD9 17 THR C 23 ALA C 44 LEU C 48 LEU C 81 SITE 3 AD9 17 COA C 101 HOH C 202 ARG D 43 THR D 47 SITE 4 AD9 17 ARG D 49 PHE D 79 ARG D 80 GLU D 82 SITE 5 AD9 17 HOH D 217 SITE 1 AE1 2 HOH B 220 LYS D 50 SITE 1 AE2 1 ASP D 65 SITE 1 AE3 8 SER B 16 ASN B 17 HIS B 18 TYR B 20 SITE 2 AE3 8 THR B 28 HIS B 70 GLN B 72 FMN B 101 SITE 1 AE4 9 SER C 16 ASN C 17 HIS C 18 TYR C 20 SITE 2 AE4 9 GLU C 64 FMN C 102 THR D 28 HIS D 70 SITE 3 AE4 9 GLN D 72 SITE 1 AE5 8 THR A 28 HIS A 70 GLN A 72 FMN A 101 SITE 2 AE5 8 SER D 16 ASN D 17 HIS D 18 TYR D 20 CRYST1 92.945 92.945 227.845 90.00 90.00 120.00 H 3 2 72 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010759 0.006212 0.000000 0.00000 SCALE2 0.000000 0.012423 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004389 0.00000 HETATM 1 C FOR A 14 -30.321 -21.550 -39.398 1.00 78.52 C HETATM 2 O FOR A 14 -31.320 -22.150 -38.993 1.00 72.42 O