HEADER LIGASE 14-MAR-19 6R1O TITLE CRYSTAL STRUCTURE OF E. COLI SERYL-TRNA SYNTHETASE COMPLEXED TO A TITLE 2 SERYL SULFAMOYL ADENOSINE DERIVATIVE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE--TRNA LIGASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SERYL-TRNA SYNTHETASE,SERRS,SERYL-TRNA(SER/SEC) SYNTHETASE; COMPND 5 EC: 6.1.1.11; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: SERS, ECVG_02257; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AMINOACYL-TRNA SYNTHETASE, CLASS II, PROTEIN SYNTHESIS, INHIBITOR, KEYWDS 2 LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR R.SALIMRAJ,R.CAIN,D.I.ROPER REVDAT 3 24-JAN-24 6R1O 1 REMARK REVDAT 2 10-FEB-21 6R1O 1 REMARK REVDAT 1 22-JAN-20 6R1O 0 JRNL AUTH R.CAIN,R.SALIMRAJ,A.S.PUNEKAR,D.BELLINI,C.W.G.FISHWICK, JRNL AUTH 2 L.CZAPLEWSKI,D.J.SCOTT,G.HARRIS,C.G.DOWSON,A.J.LLOYD, JRNL AUTH 3 D.I.ROPER JRNL TITL STRUCTURE-GUIDED ENHANCEMENT OF SELECTIVITY OF CHEMICAL JRNL TITL 2 PROBE INHIBITORS TARGETING BACTERIAL SERYL-TRNA SYNTHETASE. JRNL REF J.MED.CHEM. V. 62 9703 2019 JRNL REFN ISSN 0022-2623 JRNL PMID 31626547 JRNL DOI 10.1021/ACS.JMEDCHEM.9B01131 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 22215 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.840 REMARK 3 FREE R VALUE TEST SET COUNT : 1075 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.62 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.97 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 445 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2200 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 423 REMARK 3 BIN R VALUE (WORKING SET) : 0.2182 REMARK 3 BIN FREE R VALUE : 0.2527 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.94 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3251 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 143 REMARK 3 SOLVENT ATOMS : 131 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 69.36 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -11.77890 REMARK 3 B22 (A**2) : -11.77890 REMARK 3 B33 (A**2) : 23.55790 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.290 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.360 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.230 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.318 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.224 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.921 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3507 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4750 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1232 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 662 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3507 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 447 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : 6 ; 1.000 ; HARMONIC REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4165 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.09 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.38 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.69 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|1 - 26} REMARK 3 ORIGIN FOR THE GROUP (A): -9.4498 34.6929 -6.8173 REMARK 3 T TENSOR REMARK 3 T11: 0.1174 T22: -0.1432 REMARK 3 T33: -0.1005 T12: 0.2451 REMARK 3 T13: -0.0510 T23: 0.0853 REMARK 3 L TENSOR REMARK 3 L11: 6.2346 L22: 5.7764 REMARK 3 L33: 1.2535 L12: -1.9136 REMARK 3 L13: 0.5925 L23: 0.8626 REMARK 3 S TENSOR REMARK 3 S11: -0.1133 S12: 0.4257 S13: 0.4850 REMARK 3 S21: 0.0991 S22: -0.0688 S23: 0.2034 REMARK 3 S31: -0.4357 S32: -0.3338 S33: 0.1821 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|27 - 64} REMARK 3 ORIGIN FOR THE GROUP (A): -28.9582 38.3542 14.7650 REMARK 3 T TENSOR REMARK 3 T11: 0.0853 T22: -0.2858 REMARK 3 T33: -0.0636 T12: 0.0175 REMARK 3 T13: -0.0346 T23: 0.1555 REMARK 3 L TENSOR REMARK 3 L11: 3.8922 L22: 3.2477 REMARK 3 L33: 0.5858 L12: -2.5682 REMARK 3 L13: 2.2599 L23: 1.9066 REMARK 3 S TENSOR REMARK 3 S11: 0.2305 S12: -0.2217 S13: -0.1199 REMARK 3 S21: 0.4897 S22: -0.3596 S23: -0.1330 REMARK 3 S31: -0.0012 S32: -0.0001 S33: 0.1292 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|65 - 102} REMARK 3 ORIGIN FOR THE GROUP (A): -29.8446 30.9308 15.1070 REMARK 3 T TENSOR REMARK 3 T11: 0.1378 T22: -0.1916 REMARK 3 T33: -0.0496 T12: -0.0187 REMARK 3 T13: 0.0538 T23: 0.1851 REMARK 3 L TENSOR REMARK 3 L11: 2.4688 L22: 2.2580 REMARK 3 L33: 0.0000 L12: -0.7454 REMARK 3 L13: 1.5428 L23: 1.8874 REMARK 3 S TENSOR REMARK 3 S11: 0.2665 S12: -0.2102 S13: -0.4079 REMARK 3 S21: 0.4176 S22: -0.3835 S23: 0.0379 REMARK 3 S31: 0.6777 S32: -0.1423 S33: 0.1170 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {A|103 - 216} REMARK 3 ORIGIN FOR THE GROUP (A): 8.2701 8.2868 -11.1671 REMARK 3 T TENSOR REMARK 3 T11: -0.0860 T22: 0.0256 REMARK 3 T33: -0.0349 T12: -0.0397 REMARK 3 T13: -0.0485 T23: 0.0280 REMARK 3 L TENSOR REMARK 3 L11: 0.3832 L22: 1.3931 REMARK 3 L33: 1.7491 L12: -0.2193 REMARK 3 L13: -0.2246 L23: 0.1370 REMARK 3 S TENSOR REMARK 3 S11: -0.0732 S12: 0.2100 S13: 0.0290 REMARK 3 S21: -0.2717 S22: 0.0360 S23: 0.1379 REMARK 3 S31: -0.2237 S32: 0.0937 S33: 0.0371 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: {A|217 - 285} REMARK 3 ORIGIN FOR THE GROUP (A): -0.1814 10.3751 1.4583 REMARK 3 T TENSOR REMARK 3 T11: -0.1647 T22: -0.0215 REMARK 3 T33: 0.0196 T12: 0.0237 REMARK 3 T13: -0.0125 T23: 0.0312 REMARK 3 L TENSOR REMARK 3 L11: 1.1313 L22: 2.6049 REMARK 3 L33: 2.1873 L12: 0.3787 REMARK 3 L13: -0.0758 L23: 0.1304 REMARK 3 S TENSOR REMARK 3 S11: -0.0409 S12: -0.0997 S13: 0.0444 REMARK 3 S21: 0.0038 S22: 0.0034 S23: 0.3831 REMARK 3 S31: -0.2833 S32: -0.1673 S33: 0.0375 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: {A|286 - 405} REMARK 3 ORIGIN FOR THE GROUP (A): 9.1043 19.6357 -7.5734 REMARK 3 T TENSOR REMARK 3 T11: -0.0078 T22: -0.0554 REMARK 3 T33: -0.0919 T12: -0.0518 REMARK 3 T13: -0.0383 T23: 0.0272 REMARK 3 L TENSOR REMARK 3 L11: 0.9628 L22: 1.9747 REMARK 3 L33: 2.0355 L12: -0.4333 REMARK 3 L13: -0.4846 L23: 0.4528 REMARK 3 S TENSOR REMARK 3 S11: 0.0538 S12: 0.1361 S13: 0.1448 REMARK 3 S21: -0.1613 S22: -0.0358 S23: 0.0437 REMARK 3 S31: -0.5580 S32: 0.0534 S33: -0.0180 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: {A|406 - 431} REMARK 3 ORIGIN FOR THE GROUP (A): 25.6537 -2.0136 -15.6106 REMARK 3 T TENSOR REMARK 3 T11: -0.1429 T22: 0.2188 REMARK 3 T33: -0.0796 T12: -0.0093 REMARK 3 T13: 0.0618 T23: -0.0286 REMARK 3 L TENSOR REMARK 3 L11: 0.8276 L22: 4.9090 REMARK 3 L33: 1.9132 L12: -0.7731 REMARK 3 L13: -0.1680 L23: 1.7653 REMARK 3 S TENSOR REMARK 3 S11: -0.0774 S12: 0.1884 S13: -0.2499 REMARK 3 S21: -0.3538 S22: 0.0759 S23: -0.5985 REMARK 3 S31: 0.3921 S32: 0.4093 S33: 0.0015 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6R1O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1292100805. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.980 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22345 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.596 REMARK 200 RESOLUTION RANGE LOW (A) : 158.858 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 28.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2DQ3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE PH 5.5 0.8 M REMARK 280 LITHIUM SULFATE 0.05 M AMMONIUM SULFATE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 105.90533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 211.81067 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 158.85800 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 264.76333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 52.95267 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 105.90533 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 211.81067 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 264.76333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 158.85800 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 52.95267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 275 REMARK 465 ARG A 276 REMARK 465 ASP A 277 REMARK 465 THR A 278 REMARK 465 ARG A 279 REMARK 465 SER A 378 REMARK 465 ASP A 379 REMARK 465 LEU A 432 REMARK 465 ALA A 433 REMARK 465 LEU A 434 REMARK 465 VAL A 435 REMARK 465 PRO A 436 REMARK 465 ARG A 437 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 10 OE1 OE2 REMARK 470 GLU A 16 CD OE1 OE2 REMARK 470 LYS A 24 CG CD CE NZ REMARK 470 LYS A 29 CD CE NZ REMARK 470 ARG A 37 NH1 NH2 REMARK 470 LYS A 38 CD CE NZ REMARK 470 GLN A 41 OE1 REMARK 470 GLN A 48 OE1 NE2 REMARK 470 ARG A 51 NH2 REMARK 470 LYS A 56 CD CE NZ REMARK 470 SER A 57 OG REMARK 470 ILE A 58 CG1 CG2 CD1 REMARK 470 GLN A 60 CD OE1 NE2 REMARK 470 LYS A 62 CG CD CE NZ REMARK 470 ARG A 64 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 68 CG1 CG2 CD1 REMARK 470 LEU A 71 CG CD1 CD2 REMARK 470 ARG A 72 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 73 CG CD1 CD2 REMARK 470 ASN A 76 ND2 REMARK 470 LYS A 77 CD CE NZ REMARK 470 GLU A 80 OE2 REMARK 470 GLU A 81 OE1 REMARK 470 LYS A 86 NZ REMARK 470 LYS A 115 CG CD CE NZ REMARK 470 LYS A 166 NZ REMARK 470 GLU A 224 OE2 REMARK 470 GLU A 225 OE1 OE2 REMARK 470 SER A 273 OG REMARK 470 TYR A 274 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 283 CD NE CZ NH1 NH2 REMARK 470 LYS A 325 NZ REMARK 470 LYS A 377 C O CB CG CD CE NZ REMARK 470 LYS A 381 CG CD CE NZ REMARK 470 GLU A 417 OE1 OE2 REMARK 470 GLU A 431 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 67 98.78 -69.90 REMARK 500 THR A 158 -72.73 -132.33 REMARK 500 ALA A 227 -48.32 -29.55 REMARK 500 THR A 237 145.63 -172.89 REMARK 500 LEU A 281 38.02 -79.48 REMARK 500 LEU A 281 40.76 -79.48 REMARK 500 ILE A 282 -70.93 -81.40 REMARK 500 TRP A 363 -134.41 57.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 JPE A 502 REMARK 610 JPE A 503 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JPE A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JPE A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JPE A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 513 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 514 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 515 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 516 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 517 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 518 DBREF1 6R1O A 1 430 UNP A0A1X3JK72_ECOLX DBREF2 6R1O A A0A1X3JK72 1 430 SEQADV 6R1O GLU A 431 UNP A0A1X3JK7 EXPRESSION TAG SEQADV 6R1O LEU A 432 UNP A0A1X3JK7 EXPRESSION TAG SEQADV 6R1O ALA A 433 UNP A0A1X3JK7 EXPRESSION TAG SEQADV 6R1O LEU A 434 UNP A0A1X3JK7 EXPRESSION TAG SEQADV 6R1O VAL A 435 UNP A0A1X3JK7 EXPRESSION TAG SEQADV 6R1O PRO A 436 UNP A0A1X3JK7 EXPRESSION TAG SEQADV 6R1O ARG A 437 UNP A0A1X3JK7 EXPRESSION TAG SEQRES 1 A 437 MET LEU ASP PRO ASN LEU LEU ARG ASN GLU PRO ASP ALA SEQRES 2 A 437 VAL ALA GLU LYS LEU ALA ARG ARG GLY PHE LYS LEU ASP SEQRES 3 A 437 VAL ASP LYS LEU GLY ALA LEU GLU GLU ARG ARG LYS VAL SEQRES 4 A 437 LEU GLN VAL LYS THR GLU ASN LEU GLN ALA GLU ARG ASN SEQRES 5 A 437 SER ARG SER LYS SER ILE GLY GLN ALA LYS ALA ARG GLY SEQRES 6 A 437 GLU ASP ILE GLU PRO LEU ARG LEU GLU VAL ASN LYS LEU SEQRES 7 A 437 GLY GLU GLU LEU ASP ALA ALA LYS ALA GLU LEU ASP ALA SEQRES 8 A 437 LEU GLN ALA GLU ILE ARG ASP ILE ALA LEU THR ILE PRO SEQRES 9 A 437 ASN LEU PRO ALA ASP GLU VAL PRO VAL GLY LYS ASP GLU SEQRES 10 A 437 ASN ASP ASN VAL GLU VAL SER ARG TRP GLY THR PRO ARG SEQRES 11 A 437 GLU PHE ASP PHE GLU VAL ARG ASP HIS VAL THR LEU GLY SEQRES 12 A 437 GLU MET HIS SER GLY LEU ASP PHE ALA ALA ALA VAL LYS SEQRES 13 A 437 LEU THR GLY SER ARG PHE VAL VAL MET LYS GLY GLN ILE SEQRES 14 A 437 ALA ARG MET HIS ARG ALA LEU SER GLN PHE MET LEU ASP SEQRES 15 A 437 LEU HIS THR GLU GLN HIS GLY TYR SER GLU ASN TYR VAL SEQRES 16 A 437 PRO TYR LEU VAL ASN GLN ASP THR LEU TYR GLY THR GLY SEQRES 17 A 437 GLN LEU PRO LYS PHE ALA GLY ASP LEU PHE HIS THR ARG SEQRES 18 A 437 PRO LEU GLU GLU GLU ALA ASP THR SER ASN TYR ALA LEU SEQRES 19 A 437 ILE PRO THR ALA GLU VAL PRO LEU THR ASN LEU VAL ARG SEQRES 20 A 437 GLY GLU ILE ILE ASP GLU ASP ASP LEU PRO ILE LYS MET SEQRES 21 A 437 THR ALA HIS THR PRO CYS PHE ARG SER GLU ALA GLY SER SEQRES 22 A 437 TYR GLY ARG ASP THR ARG GLY LEU ILE ARG MET HIS GLN SEQRES 23 A 437 PHE ASP LYS VAL GLU MET VAL GLN ILE VAL ARG PRO GLU SEQRES 24 A 437 ASP SER MET ALA ALA LEU GLU GLU MET THR GLY HIS ALA SEQRES 25 A 437 GLU LYS VAL LEU GLN LEU LEU GLY LEU PRO TYR ARG LYS SEQRES 26 A 437 ILE ILE LEU CYS THR GLY ASP MET GLY PHE GLY ALA CYS SEQRES 27 A 437 LYS THR TYR ASP LEU GLU VAL TRP ILE PRO ALA GLN ASN SEQRES 28 A 437 THR TYR ARG GLU ILE SER SER CYS SER ASN VAL TRP ASP SEQRES 29 A 437 PHE GLN ALA ARG ARG MET GLN ALA ARG CYS ARG SER LYS SEQRES 30 A 437 SER ASP LYS LYS THR ARG LEU VAL HIS THR LEU ASN GLY SEQRES 31 A 437 SER GLY LEU ALA VAL GLY ARG THR LEU VAL ALA VAL MET SEQRES 32 A 437 GLU ASN TYR GLN GLN ALA ASP GLY ARG ILE GLU VAL PRO SEQRES 33 A 437 GLU VAL LEU ARG PRO TYR MET ASN GLY LEU GLU TYR ILE SEQRES 34 A 437 GLY GLU LEU ALA LEU VAL PRO ARG HET JPE A 501 35 HET JPE A 502 17 HET JPE A 503 30 HET CL A 504 1 HET CL A 505 1 HET SO4 A 506 5 HET SO4 A 507 5 HET SO4 A 508 5 HET DMS A 509 4 HET DMS A 510 4 HET DMS A 511 4 HET DMS A 512 4 HET EDO A 513 4 HET EDO A 514 4 HET EDO A 515 4 HET EDO A 516 4 HET EDO A 517 4 HET TRS A 518 8 HETNAM JPE [(2~{R},3~{S},4~{R},5~{R})-5-(6-AZANYL-2-PYRIDIN-3-YL- HETNAM 2 JPE PURIN-9-YL)-3,4-BIS(OXIDANYL)OXOLAN-2-YL]METHYL ~{N}- HETNAM 3 JPE [(2~{S})-2-AZANYL-3-OXIDANYL-PROPANOYL]SULFAMATE HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION HETNAM DMS DIMETHYL SULFOXIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN EDO ETHYLENE GLYCOL HETSYN TRS TRIS BUFFER FORMUL 2 JPE 3(C18 H22 N8 O8 S) FORMUL 5 CL 2(CL 1-) FORMUL 7 SO4 3(O4 S 2-) FORMUL 10 DMS 4(C2 H6 O S) FORMUL 14 EDO 5(C2 H6 O2) FORMUL 19 TRS C4 H12 N O3 1+ FORMUL 20 HOH *131(H2 O) HELIX 1 AA1 ASP A 3 GLU A 10 1 8 HELIX 2 AA2 GLU A 10 ARG A 21 1 12 HELIX 3 AA3 ASP A 26 GLY A 65 1 40 HELIX 4 AA4 GLU A 69 LEU A 101 1 33 HELIX 5 AA5 ASP A 116 ASN A 120 5 5 HELIX 6 AA6 ASP A 138 HIS A 146 1 9 HELIX 7 AA7 PHE A 151 THR A 158 1 8 HELIX 8 AA8 LYS A 166 GLN A 187 1 22 HELIX 9 AA9 ASN A 200 THR A 207 1 8 HELIX 10 AB1 PHE A 213 LEU A 217 5 5 HELIX 11 AB2 LEU A 223 ALA A 227 5 5 HELIX 12 AB3 ALA A 238 LEU A 245 1 8 HELIX 13 AB4 ASP A 254 LEU A 256 5 3 HELIX 14 AB5 ASP A 300 LEU A 319 1 20 HELIX 15 AB6 CYS A 329 MET A 333 5 5 HELIX 16 AB7 PRO A 348 ASN A 351 5 4 HELIX 17 AB8 ASP A 364 GLN A 371 1 8 HELIX 18 AB9 VAL A 395 TYR A 406 1 12 HELIX 19 AC1 PRO A 416 ASN A 424 5 9 SHEET 1 AA1 8 VAL A 121 TRP A 126 0 SHEET 2 AA1 8 TYR A 323 ILE A 327 -1 O LYS A 325 N SER A 124 SHEET 3 AA1 8 LYS A 339 ILE A 347 -1 O ASP A 342 N ILE A 326 SHEET 4 AA1 8 THR A 352 ASN A 361 -1 O CYS A 359 N TYR A 341 SHEET 5 AA1 8 HIS A 386 ALA A 394 -1 O ASN A 389 N SER A 360 SHEET 6 AA1 8 GLN A 286 VAL A 296 -1 N VAL A 290 O GLY A 392 SHEET 7 AA1 8 ILE A 258 PHE A 267 -1 N ILE A 258 O ILE A 295 SHEET 8 AA1 8 SER A 191 GLU A 192 1 N SER A 191 O THR A 261 SHEET 1 AA2 2 LEU A 149 ASP A 150 0 SHEET 2 AA2 2 VAL A 164 MET A 165 -1 O VAL A 164 N ASP A 150 SHEET 1 AA3 2 LEU A 198 VAL A 199 0 SHEET 2 AA3 2 ALA A 233 LEU A 234 -1 O ALA A 233 N VAL A 199 SHEET 1 AA4 3 ILE A 250 ASP A 252 0 SHEET 2 AA4 3 ARG A 373 ARG A 375 1 O ARG A 373 N ILE A 251 SHEET 3 AA4 3 THR A 382 LEU A 384 -1 O ARG A 383 N CYS A 374 SHEET 1 AA5 2 ILE A 413 GLU A 414 0 SHEET 2 AA5 2 TYR A 428 ILE A 429 -1 O ILE A 429 N ILE A 413 CISPEP 1 LEU A 210 PRO A 211 0 8.01 CISPEP 2 LEU A 256 PRO A 257 0 -2.53 CISPEP 3 GLY A 392 LEU A 393 0 2.88 SITE 1 AC1 21 THR A 237 GLU A 239 ARG A 268 GLU A 270 SITE 2 AC1 21 LEU A 281 ILE A 282 ARG A 283 MET A 284 SITE 3 AC1 21 PHE A 287 LYS A 289 GLU A 291 GLU A 355 SITE 4 AC1 21 ILE A 356 SER A 357 SER A 358 ASN A 389 SITE 5 AC1 21 SER A 391 ALA A 394 GLY A 396 ARG A 397 SITE 6 AC1 21 EDO A 513 SITE 1 AC2 9 LYS A 166 SER A 191 ASN A 193 LEU A 245 SITE 2 AC2 9 GLU A 249 ASP A 255 ILE A 258 JPE A 503 SITE 3 AC2 9 HOH A 657 SITE 1 AC3 12 GLU A 131 PHE A 132 ASP A 133 PHE A 134 SITE 2 AC3 12 GLU A 135 VAL A 136 SER A 147 LYS A 166 SITE 3 AC3 12 GLU A 249 ILE A 250 ASP A 255 JPE A 502 SITE 1 AC4 1 ARG A 373 SITE 1 AC5 1 ARG A 221 SITE 1 AC6 4 SER A 53 ASN A 120 GLU A 122 HOH A 656 SITE 1 AC7 4 ARG A 354 ARG A 397 HOH A 603 HOH A 660 SITE 1 AC8 2 ARG A 324 THR A 352 SITE 1 AC9 3 GLY A 127 THR A 128 EDO A 514 SITE 1 AD1 2 GLN A 187 TYR A 422 SITE 1 AD2 5 ARG A 130 TYR A 406 GLN A 408 GLU A 414 SITE 2 AD2 5 EDO A 514 SITE 1 AD3 4 GLN A 168 ARG A 171 MET A 423 LEU A 426 SITE 1 AD4 8 VAL A 163 MET A 165 HIS A 173 LEU A 281 SITE 2 AD4 8 PHE A 287 ASP A 288 GLY A 396 JPE A 501 SITE 1 AD5 5 GLY A 320 ASN A 405 TYR A 406 DMS A 509 SITE 2 AD5 5 DMS A 511 SITE 1 AD6 4 PRO A 4 LEU A 7 ARG A 8 GLU A 34 SITE 1 AD7 5 ASN A 200 GLN A 201 THR A 229 ASN A 231 SITE 2 AD7 5 HOH A 682 SITE 1 AD8 2 HIS A 188 LYS A 314 SITE 1 AD9 3 PRO A 421 TYR A 422 HOH A 604 CRYST1 85.410 85.410 317.716 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011708 0.006760 0.000000 0.00000 SCALE2 0.000000 0.013520 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003147 0.00000