HEADER TRANSCRIPTION 19-MAR-19 6R2V TITLE ARABIDOPSIS NF-Y/CCAAT-BOX COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-6; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ATNF-YA-6; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: NF-YB2; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: NF-YC3; COMPND 12 CHAIN: C; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 4; COMPND 15 MOLECULE: FT (-5KB) CCAAT-BOX 5'; COMPND 16 CHAIN: I; COMPND 17 ENGINEERED: YES; COMPND 18 MOL_ID: 5; COMPND 19 MOLECULE: FT (-5KB) CCAAT-BOX 3'; COMPND 20 CHAIN: J; COMPND 21 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: NFYA6, AT3G14020, MDC16.15; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 10 ORGANISM_COMMON: THALE CRESS; SOURCE 11 ORGANISM_TAXID: 3702; SOURCE 12 GENE: AXX17_AT5G46140; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 17 ORGANISM_COMMON: THALE CRESS; SOURCE 18 ORGANISM_TAXID: 3702; SOURCE 19 GENE: AXX17_AT1G49320; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 22 MOL_ID: 4; SOURCE 23 SYNTHETIC: YES; SOURCE 24 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 25 ORGANISM_COMMON: THALE CRESS; SOURCE 26 ORGANISM_TAXID: 3702; SOURCE 27 MOL_ID: 5; SOURCE 28 SYNTHETIC: YES; SOURCE 29 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 30 ORGANISM_COMMON: THALE CRESS; SOURCE 31 ORGANISM_TAXID: 3702 KEYWDS NF-Y, TRANSCRIPTION FACTOR, ARABIDOPSIS, DNA-BINDING, PROTEIN-DNA KEYWDS 2 COMPLEX, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR A.CHAVES-SANJUAN,N.GNESUTTA,M.CHIARA,A.BERNARDINI,F.FORNARA,D.HORNER, AUTHOR 2 M.NARDINI,R.MANTOVANI REVDAT 4 24-JAN-24 6R2V 1 REMARK REVDAT 3 03-MAR-21 6R2V 1 JRNL REVDAT 2 30-DEC-20 6R2V 1 JRNL REVDAT 1 30-SEP-20 6R2V 0 JRNL AUTH A.CHAVES-SANJUAN,N.GNESUTTA,A.GOBBINI,D.MARTIGNAGO, JRNL AUTH 2 A.BERNARDINI,F.FORNARA,R.MANTOVANI,M.NARDINI JRNL TITL STRUCTURAL DETERMINANTS FOR NF-Y SUBUNIT ORGANIZATION AND JRNL TITL 2 NF-Y/DNA ASSOCIATION IN PLANTS. JRNL REF PLANT J. V. 105 49 2021 JRNL REFN ESSN 1365-313X JRNL PMID 33098724 JRNL DOI 10.1111/TPJ.15038 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_3304: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 56.1 REMARK 3 NUMBER OF REFLECTIONS : 11940 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.230 REMARK 3 FREE R VALUE TEST SET COUNT : 624 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.3272 - 3.9716 0.98 5122 278 0.1751 0.2330 REMARK 3 2 3.9716 - 3.1527 0.89 4483 247 0.2179 0.2553 REMARK 3 3 3.1527 - 2.7543 0.29 1451 88 0.3067 0.3108 REMARK 3 4 2.7543 - 2.5025 0.05 260 11 0.3534 0.3271 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.430 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3244 REMARK 3 ANGLE : 0.890 4575 REMARK 3 CHIRALITY : 0.057 508 REMARK 3 PLANARITY : 0.008 412 REMARK 3 DIHEDRAL : 33.437 1326 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 18 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'J' AND (RESID -25 THROUGH -16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.5166 -6.7863 -5.3106 REMARK 3 T TENSOR REMARK 3 T11: 1.4961 T22: 1.0044 REMARK 3 T33: 0.8049 T12: 0.2761 REMARK 3 T13: -0.2441 T23: -0.2977 REMARK 3 L TENSOR REMARK 3 L11: 1.5512 L22: 4.5235 REMARK 3 L33: 0.2051 L12: -0.8710 REMARK 3 L13: -0.2872 L23: 0.9233 REMARK 3 S TENSOR REMARK 3 S11: 0.7645 S12: -1.0304 S13: 0.0660 REMARK 3 S21: 0.7938 S22: -0.2993 S23: -0.8456 REMARK 3 S31: 2.1231 S32: 0.0135 S33: -0.2913 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'J' AND (RESID -15 THROUGH -1 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.5767 -17.7111 -38.7830 REMARK 3 T TENSOR REMARK 3 T11: 0.3153 T22: 0.2998 REMARK 3 T33: 0.3102 T12: 0.0000 REMARK 3 T13: 0.0052 T23: 0.0412 REMARK 3 L TENSOR REMARK 3 L11: 4.2603 L22: 3.7866 REMARK 3 L33: 1.3033 L12: -0.4883 REMARK 3 L13: 1.7770 L23: 1.5966 REMARK 3 S TENSOR REMARK 3 S11: 0.0744 S12: 0.0777 S13: -0.1888 REMARK 3 S21: -0.0688 S22: -0.0519 S23: 0.3106 REMARK 3 S31: -0.0605 S32: -0.4863 S33: 0.0056 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 172 THROUGH 179 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.6620 20.0718 -35.4913 REMARK 3 T TENSOR REMARK 3 T11: 0.5701 T22: 0.6607 REMARK 3 T33: 1.2383 T12: 0.0604 REMARK 3 T13: 0.0690 T23: 0.2511 REMARK 3 L TENSOR REMARK 3 L11: 0.6756 L22: 0.2520 REMARK 3 L33: 1.0045 L12: 0.4300 REMARK 3 L13: 0.8237 L23: 0.5141 REMARK 3 S TENSOR REMARK 3 S11: -0.1816 S12: 0.6356 S13: 0.0938 REMARK 3 S21: -0.5821 S22: 0.0671 S23: -0.1942 REMARK 3 S31: -0.4079 S32: 0.5110 S33: 0.0640 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 180 THROUGH 195 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.0121 15.0601 -28.0006 REMARK 3 T TENSOR REMARK 3 T11: 0.3549 T22: 0.2958 REMARK 3 T33: 0.5127 T12: 0.0103 REMARK 3 T13: -0.1038 T23: -0.0721 REMARK 3 L TENSOR REMARK 3 L11: 0.4271 L22: 0.1060 REMARK 3 L33: 0.1816 L12: 0.1998 REMARK 3 L13: 0.2562 L23: 0.1082 REMARK 3 S TENSOR REMARK 3 S11: -0.3775 S12: -0.1024 S13: 1.1946 REMARK 3 S21: -0.1655 S22: 0.0999 S23: 0.0804 REMARK 3 S31: -0.2570 S32: -0.1949 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 196 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.7964 -4.9247 -31.8844 REMARK 3 T TENSOR REMARK 3 T11: 0.4524 T22: 0.2909 REMARK 3 T33: 0.4706 T12: -0.0603 REMARK 3 T13: -0.0101 T23: 0.0414 REMARK 3 L TENSOR REMARK 3 L11: 0.3849 L22: 1.1544 REMARK 3 L33: 0.9906 L12: 0.5832 REMARK 3 L13: 0.5747 L23: 0.8179 REMARK 3 S TENSOR REMARK 3 S11: -0.6200 S12: 0.2374 S13: -0.1857 REMARK 3 S21: -0.5645 S22: 0.8187 S23: -0.8641 REMARK 3 S31: -0.3111 S32: 0.6479 S33: 0.1179 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 209 THROUGH 226 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.2249 -25.9001 -35.0374 REMARK 3 T TENSOR REMARK 3 T11: 0.1949 T22: 0.0967 REMARK 3 T33: 0.4120 T12: 0.0718 REMARK 3 T13: -0.0097 T23: -0.0119 REMARK 3 L TENSOR REMARK 3 L11: 1.1912 L22: 1.4242 REMARK 3 L33: 2.8958 L12: 0.9469 REMARK 3 L13: 0.4222 L23: -0.4644 REMARK 3 S TENSOR REMARK 3 S11: -0.4599 S12: -0.6595 S13: -0.1639 REMARK 3 S21: -1.0122 S22: -0.3063 S23: -0.5386 REMARK 3 S31: 0.4585 S32: -0.7290 S33: -0.4369 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 227 THROUGH 233 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3517 -37.1049 -31.7529 REMARK 3 T TENSOR REMARK 3 T11: 0.8922 T22: 0.9381 REMARK 3 T33: 1.3793 T12: -0.1083 REMARK 3 T13: 0.1166 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.0391 L22: -0.0007 REMARK 3 L33: 0.0078 L12: 0.0007 REMARK 3 L13: -0.0289 L23: 0.0028 REMARK 3 S TENSOR REMARK 3 S11: -0.0706 S12: -0.2905 S13: -0.4851 REMARK 3 S21: -0.3371 S22: -0.1376 S23: 0.4699 REMARK 3 S31: 1.3353 S32: -0.7483 S33: 0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 24 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.2224 -4.6725 -26.5606 REMARK 3 T TENSOR REMARK 3 T11: 0.4847 T22: 0.2665 REMARK 3 T33: 0.5644 T12: 0.0411 REMARK 3 T13: -0.0977 T23: -0.1296 REMARK 3 L TENSOR REMARK 3 L11: 6.8358 L22: 9.7826 REMARK 3 L33: 9.1228 L12: -4.1313 REMARK 3 L13: -3.3183 L23: -5.4024 REMARK 3 S TENSOR REMARK 3 S11: -0.3023 S12: -0.6915 S13: 0.9190 REMARK 3 S21: -0.0150 S22: -0.1731 S23: -2.4926 REMARK 3 S31: -0.5417 S32: 1.5147 S33: -0.6586 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 34 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.4573 1.1656 -29.6227 REMARK 3 T TENSOR REMARK 3 T11: 0.0442 T22: 0.2277 REMARK 3 T33: 0.2868 T12: 0.0564 REMARK 3 T13: 0.0287 T23: 0.0218 REMARK 3 L TENSOR REMARK 3 L11: 4.2145 L22: 2.8768 REMARK 3 L33: 3.4610 L12: -1.2180 REMARK 3 L13: -0.6861 L23: -1.9720 REMARK 3 S TENSOR REMARK 3 S11: -0.1020 S12: -0.0992 S13: 0.1932 REMARK 3 S21: 0.0389 S22: 0.0017 S23: -0.0941 REMARK 3 S31: -0.3084 S32: 0.1139 S33: -0.0129 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 82 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.4156 12.9171 -15.6192 REMARK 3 T TENSOR REMARK 3 T11: 0.4700 T22: 0.3821 REMARK 3 T33: 0.5341 T12: 0.3023 REMARK 3 T13: -0.1025 T23: -0.4033 REMARK 3 L TENSOR REMARK 3 L11: 5.4828 L22: 1.3998 REMARK 3 L33: 0.4656 L12: 1.3260 REMARK 3 L13: -0.9124 L23: -0.1652 REMARK 3 S TENSOR REMARK 3 S11: -0.1462 S12: -1.9494 S13: 1.4140 REMARK 3 S21: 0.8136 S22: -0.1458 S23: -0.1378 REMARK 3 S31: 0.0981 S32: 0.6666 S33: 0.2381 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 101 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.8942 4.2503 -15.3296 REMARK 3 T TENSOR REMARK 3 T11: 0.9023 T22: 1.2612 REMARK 3 T33: 0.9620 T12: 0.1458 REMARK 3 T13: 0.2802 T23: 0.1794 REMARK 3 L TENSOR REMARK 3 L11: 0.1382 L22: 1.6209 REMARK 3 L33: 3.1095 L12: 0.0606 REMARK 3 L13: 0.4906 L23: 0.9932 REMARK 3 S TENSOR REMARK 3 S11: -1.0762 S12: -2.3141 S13: -0.4128 REMARK 3 S21: 1.6302 S22: 0.2438 S23: 1.2009 REMARK 3 S31: 0.6562 S32: -0.8673 S33: -0.3942 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 54 THROUGH 63 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.6687 -23.7807 -26.2792 REMARK 3 T TENSOR REMARK 3 T11: 0.8090 T22: 1.6977 REMARK 3 T33: 1.3417 T12: 0.1280 REMARK 3 T13: 0.1074 T23: 0.3249 REMARK 3 L TENSOR REMARK 3 L11: 0.1028 L22: 0.0106 REMARK 3 L33: 0.1386 L12: -0.0240 REMARK 3 L13: 0.1234 L23: -0.0319 REMARK 3 S TENSOR REMARK 3 S11: -0.4047 S12: -1.9430 S13: 0.2701 REMARK 3 S21: 0.4709 S22: 1.0244 S23: -0.2528 REMARK 3 S31: -0.4899 S32: -1.8482 S33: 0.0076 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 64 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.4207 -11.9526 -23.2302 REMARK 3 T TENSOR REMARK 3 T11: 0.5378 T22: 1.5170 REMARK 3 T33: 0.9445 T12: 0.2914 REMARK 3 T13: 0.0120 T23: -0.5812 REMARK 3 L TENSOR REMARK 3 L11: 2.9940 L22: 3.9952 REMARK 3 L33: 8.6505 L12: -3.4517 REMARK 3 L13: 5.1023 L23: -5.8843 REMARK 3 S TENSOR REMARK 3 S11: 0.4556 S12: 1.2070 S13: -1.9699 REMARK 3 S21: -0.5500 S22: -0.2797 S23: 2.5255 REMARK 3 S31: 0.6968 S32: -2.8354 S33: 0.4489 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 73 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.8276 2.3565 -25.2699 REMARK 3 T TENSOR REMARK 3 T11: 0.2967 T22: 0.2068 REMARK 3 T33: 0.2457 T12: 0.0962 REMARK 3 T13: 0.0427 T23: 0.0149 REMARK 3 L TENSOR REMARK 3 L11: 3.2434 L22: 3.7662 REMARK 3 L33: 2.4495 L12: -0.9812 REMARK 3 L13: -2.1480 L23: 0.3975 REMARK 3 S TENSOR REMARK 3 S11: 0.0500 S12: -0.3078 S13: 0.7238 REMARK 3 S21: 0.0780 S22: -0.3493 S23: 0.0586 REMARK 3 S31: 0.2684 S32: -0.1109 S33: -0.0370 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 119 THROUGH 148 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4246 6.0309 -41.4321 REMARK 3 T TENSOR REMARK 3 T11: 0.4904 T22: 0.4131 REMARK 3 T33: 0.4491 T12: -0.0176 REMARK 3 T13: 0.0268 T23: 0.1199 REMARK 3 L TENSOR REMARK 3 L11: 6.1150 L22: 6.4229 REMARK 3 L33: 3.7007 L12: 2.5189 REMARK 3 L13: 1.3357 L23: 4.6241 REMARK 3 S TENSOR REMARK 3 S11: 0.0573 S12: 0.6422 S13: 1.2906 REMARK 3 S21: -1.4581 S22: -0.5598 S23: 0.4572 REMARK 3 S31: -0.9745 S32: -0.5688 S33: -0.4578 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'I' AND (RESID 3 THROUGH 7 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.1447 -14.0348 -48.8948 REMARK 3 T TENSOR REMARK 3 T11: 0.3329 T22: 0.5530 REMARK 3 T33: 0.3165 T12: 0.1421 REMARK 3 T13: -0.0259 T23: 0.1059 REMARK 3 L TENSOR REMARK 3 L11: 1.7380 L22: 9.4690 REMARK 3 L33: 1.5886 L12: -0.1366 REMARK 3 L13: 1.4246 L23: 1.9315 REMARK 3 S TENSOR REMARK 3 S11: 0.6151 S12: 0.7519 S13: -0.2784 REMARK 3 S21: -0.9790 S22: -0.3694 S23: -0.9536 REMARK 3 S31: -0.1577 S32: 0.5940 S33: 0.5741 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'I' AND (RESID 8 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.4046 -16.4724 -16.9402 REMARK 3 T TENSOR REMARK 3 T11: 1.0218 T22: 0.3611 REMARK 3 T33: 0.2768 T12: 0.0619 REMARK 3 T13: -0.0250 T23: 0.0813 REMARK 3 L TENSOR REMARK 3 L11: 2.8483 L22: 2.2335 REMARK 3 L33: 2.6209 L12: 0.7866 REMARK 3 L13: -0.8516 L23: 0.2180 REMARK 3 S TENSOR REMARK 3 S11: 0.0710 S12: -1.0015 S13: 0.0658 REMARK 3 S21: 1.3919 S22: -0.2459 S23: 0.1534 REMARK 3 S31: -0.0764 S32: -0.7110 S33: 0.0163 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'I' AND (RESID 23 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.5774 7.9621 1.8399 REMARK 3 T TENSOR REMARK 3 T11: 1.2658 T22: 0.9504 REMARK 3 T33: 0.5509 T12: 0.1849 REMARK 3 T13: 0.0443 T23: -0.1023 REMARK 3 L TENSOR REMARK 3 L11: 1.2339 L22: 6.1836 REMARK 3 L33: 0.1433 L12: -0.5513 REMARK 3 L13: -0.3467 L23: 0.6293 REMARK 3 S TENSOR REMARK 3 S11: 0.5787 S12: -0.1005 S13: 0.1677 REMARK 3 S21: 0.6827 S22: -0.3574 S23: -0.8962 REMARK 3 S31: -0.3239 S32: 0.7796 S33: -0.0831 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6R2V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1292101207. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999998 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11940 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 41.320 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.200 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 56.1 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 8.5 REMARK 200 DATA REDUNDANCY IN SHELL : 8.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4AWL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 8000, 5% ETHYLENE GLYCOL, 0.1M REMARK 280 MES PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.72300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.15250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.76250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.15250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.72300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.76250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -89.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 169 REMARK 465 ASN A 170 REMARK 465 GLU A 171 REMARK 465 GLU A 234 REMARK 465 SER A 235 REMARK 465 ASN A 236 REMARK 465 SER A 237 REMARK 465 GLY A 238 REMARK 465 SER A 239 REMARK 465 LEU A 240 REMARK 465 VAL A 241 REMARK 465 PRO A 242 REMARK 465 ARG A 243 REMARK 465 GLY B 20 REMARK 465 SER B 21 REMARK 465 HIS B 22 REMARK 465 MET B 23 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLN C 56 OP1 DC I 13 1455 2.07 REMARK 500 NH2 ARG A 187 CB PHE C 57 3554 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO C 147 C - N - CA ANGL. DEV. = 14.0 DEGREES REMARK 500 PRO C 147 C - N - CD ANGL. DEV. = -14.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 232 46.41 70.48 REMARK 500 PHE B 100 42.57 -86.41 REMARK 500 THR C 55 -178.36 -59.70 REMARK 500 ASN C 68 102.92 -53.78 REMARK 500 ALA C 82 -4.36 -57.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG A 189 10.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 227 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH C 221 DISTANCE = 7.00 ANGSTROMS REMARK 525 HOH I 123 DISTANCE = 5.81 ANGSTROMS DBREF 6R2V A 170 242 UNP Q9LVJ7 NFYA6_ARATH 170 241 DBREF1 6R2V B 24 116 UNP A0A178UPH7_ARATH DBREF2 6R2V B A0A178UPH7 24 116 DBREF1 6R2V C 55 148 UNP A0A178WGU5_ARATH DBREF2 6R2V C A0A178WGU5 55 148 DBREF 6R2V I 3 27 PDB 6R2V 6R2V 3 27 DBREF 6R2V J -25 -1 PDB 6R2V 6R2V -25 -1 SEQADV 6R2V MET A 169 UNP Q9LVJ7 INITIATING METHIONINE SEQADV 6R2V GLY A 238 UNP Q9LVJ7 INSERTION SEQADV 6R2V VAL A 241 UNP Q9LVJ7 SER 240 CONFLICT SEQADV 6R2V ARG A 243 UNP Q9LVJ7 EXPRESSION TAG SEQADV 6R2V GLY B 20 UNP A0A178UPH EXPRESSION TAG SEQADV 6R2V SER B 21 UNP A0A178UPH EXPRESSION TAG SEQADV 6R2V HIS B 22 UNP A0A178UPH EXPRESSION TAG SEQADV 6R2V MET B 23 UNP A0A178UPH EXPRESSION TAG SEQADV 6R2V MET C 54 UNP A0A178WGU INITIATING METHIONINE SEQRES 1 A 75 MET ASN GLU PRO ILE PHE VAL ASN ALA LYS GLN TYR GLN SEQRES 2 A 75 ALA ILE LEU ARG ARG ARG GLU ARG ARG ALA LYS LEU GLU SEQRES 3 A 75 ALA GLN ASN LYS LEU ILE LYS VAL ARG LYS PRO TYR LEU SEQRES 4 A 75 HIS GLU SER ARG HIS LEU HIS ALA LEU LYS ARG VAL ARG SEQRES 5 A 75 GLY SER GLY GLY ARG PHE LEU ASN THR LYS LYS HIS GLN SEQRES 6 A 75 GLU SER ASN SER GLY SER LEU VAL PRO ARG SEQRES 1 B 97 GLY SER HIS MET SER PRO ARG GLU GLN ASP ARG PHE LEU SEQRES 2 B 97 PRO ILE ALA ASN VAL SER ARG ILE MET LYS LYS ALA LEU SEQRES 3 B 97 PRO ALA ASN ALA LYS ILE SER LYS ASP ALA LYS GLU THR SEQRES 4 B 97 MET GLN GLU CYS VAL SER GLU PHE ILE SER PHE VAL THR SEQRES 5 B 97 GLY GLU ALA SER ASP LYS CYS GLN LYS GLU LYS ARG LYS SEQRES 6 B 97 THR ILE ASN GLY ASP ASP LEU LEU TRP ALA MET THR THR SEQRES 7 B 97 LEU GLY PHE GLU ASP TYR VAL GLU PRO LEU LYS VAL TYR SEQRES 8 B 97 LEU GLN ARG PHE ARG GLU SEQRES 1 C 95 MET THR GLN PHE LYS GLU ILE GLU LYS THR THR ASP PHE SEQRES 2 C 95 LYS ASN HIS SER LEU PRO LEU ALA ARG ILE LYS LYS ILE SEQRES 3 C 95 MET LYS ALA ASP GLU ASP VAL ARG MET ILE SER ALA GLU SEQRES 4 C 95 ALA PRO VAL VAL PHE ALA ARG ALA CYS GLU MET PHE ILE SEQRES 5 C 95 LEU GLU LEU THR LEU ARG SER TRP ASN HIS THR GLU GLU SEQRES 6 C 95 ASN LYS ARG ARG THR LEU GLN LYS ASN ASP ILE ALA ALA SEQRES 7 C 95 ALA VAL THR ARG THR ASP ILE PHE ASP PHE LEU VAL ASP SEQRES 8 C 95 ILE VAL PRO ARG SEQRES 1 I 25 DC DT DC DA DT DC DC DA DA DT DC DC DT SEQRES 2 I 25 DT DT DA DT DG DG DA DA DT DC DC DA SEQRES 1 J 25 DG DA DT DT DC DC DA DT DA DA DA DG DG SEQRES 2 J 25 DA DT DT DG DG DA DT DG DA DG DT DG FORMUL 6 HOH *140(H2 O) HELIX 1 AA1 GLN A 179 GLN A 196 1 18 HELIX 2 AA2 HIS A 208 LEU A 216 1 9 HELIX 3 AA3 ARG B 26 PHE B 31 1 6 HELIX 4 AA4 PRO B 33 ALA B 44 1 12 HELIX 5 AA5 SER B 52 LYS B 82 1 31 HELIX 6 AA6 ASN B 87 LEU B 98 1 12 HELIX 7 AA7 PHE B 100 GLU B 116 1 17 HELIX 8 AA8 PRO C 72 LYS C 81 1 10 HELIX 9 AA9 GLU C 92 ASN C 119 1 28 HELIX 10 AB1 GLN C 125 THR C 136 1 12 HELIX 11 AB2 PHE C 139 VAL C 143 5 5 SHEET 1 AA1 2 LYS B 50 ILE B 51 0 SHEET 2 AA1 2 THR C 123 LEU C 124 1 O LEU C 124 N LYS B 50 SHEET 1 AA2 2 THR B 85 ILE B 86 0 SHEET 2 AA2 2 MET C 88 ILE C 89 1 O MET C 88 N ILE B 86 CRYST1 53.446 85.525 130.305 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018710 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011692 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007674 0.00000