HEADER HYDROLASE 21-MAR-19 6R42 TITLE STRUCTURE OF R504C MUTANT OF PSEUDOMONAS AERUGINOSA PENICILLIN-BINDING TITLE 2 PROTEIN 3 (PBP3) IN COMPLEX WITH PIPERACILLIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDOGLYCAN D,D-TRANSPEPTIDASE FTSI; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PENICILLIN-BINDING PROTEIN 3,PBP-3; COMPND 5 EC: 3.4.16.4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA (STRAIN ATCC 15692 / DSM SOURCE 3 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1); SOURCE 4 ORGANISM_TAXID: 208964; SOURCE 5 GENE: FTSI, PBPB, PA4418; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PENICILLIN-BINDING PROTEIN, PEPTIDOGLYCAN, TRANSPEPTIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.BELLINI,C.G.DOWSON REVDAT 2 24-JAN-24 6R42 1 REMARK REVDAT 1 19-FEB-20 6R42 0 JRNL AUTH D.BELLINI,L.KOEKEMOER,H.NEWMAN,C.G.DOWSON JRNL TITL NOVEL AND IMPROVED CRYSTAL STRUCTURES OF H. INFLUENZAE, E. JRNL TITL 2 COLI AND P. AERUGINOSA PENICILLIN-BINDING PROTEIN 3 (PBP3) JRNL TITL 3 AND N. GONORRHOEAE PBP2: TOWARD A BETTER UNDERSTANDING OF JRNL TITL 4 BETA-LACTAM TARGET-MEDIATED RESISTANCE. JRNL REF J.MOL.BIOL. V. 431 3501 2019 JRNL REFN ESSN 1089-8638 JRNL PMID 31301409 JRNL DOI 10.1016/J.JMB.2019.07.010 REMARK 2 REMARK 2 RESOLUTION. 1.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 51309 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2761 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.72 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3711 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.3650 REMARK 3 BIN FREE R VALUE SET COUNT : 208 REMARK 3 BIN FREE R VALUE : 0.3970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3939 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 118 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.95000 REMARK 3 B22 (A**2) : -0.93000 REMARK 3 B33 (A**2) : -2.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.125 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.124 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.123 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.176 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4051 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3950 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5501 ; 2.002 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9058 ; 1.139 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 516 ; 7.087 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 170 ;35.086 ;23.294 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 663 ;15.608 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;17.131 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 618 ; 0.162 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4622 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 912 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2067 ; 2.908 ; 3.096 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2066 ; 2.901 ; 3.093 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2582 ; 4.180 ; 4.628 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2583 ; 4.180 ; 4.632 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1984 ; 3.800 ; 3.593 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1985 ; 3.799 ; 3.596 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2920 ; 5.594 ; 5.207 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4388 ; 7.339 ;36.938 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4381 ; 7.336 ;36.953 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6R42 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1292101408. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54141 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.720 REMARK 200 RESOLUTION RANGE LOW (A) : 54.230 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3OC2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% (W/V) POLYETHYLENE GLYCOL 3 350, REMARK 280 0.1 M BIS-TRIS PROPANE PH 7.8 AND 1% (W/V) PROTAMINE SULPHATE, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.22000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.38000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.32000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.38000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.22000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.32000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 43 REMARK 465 PRO A 44 REMARK 465 GLY A 45 REMARK 465 TYR A 46 REMARK 465 THR A 564 REMARK 465 GLU A 565 REMARK 465 GLN A 566 REMARK 465 GLN A 567 REMARK 465 GLN A 568 REMARK 465 VAL A 569 REMARK 465 ASN A 570 REMARK 465 ALA A 571 REMARK 465 ALA A 572 REMARK 465 PRO A 573 REMARK 465 ALA A 574 REMARK 465 LYS A 575 REMARK 465 GLY A 576 REMARK 465 GLY A 577 REMARK 465 ARG A 578 REMARK 465 GLY A 579 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 294 C01 JPP A 701 0.90 REMARK 500 O HOH A 900 O HOH A 907 1.52 REMARK 500 OG SER A 294 O01 JPP A 701 1.85 REMARK 500 O HOH A 900 O HOH A 903 2.02 REMARK 500 OE1 GLN A 324 OG1 THR A 329 2.03 REMARK 500 OG SER A 294 C20 JPP A 701 2.14 REMARK 500 CE1 TYR A 367 OE1 GLN A 371 2.15 REMARK 500 CB SER A 294 C01 JPP A 701 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 49 C - N - CD ANGL. DEV. = -46.6 DEGREES REMARK 500 ARG A 153 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ASP A 341 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG A 551 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 48 -131.07 55.47 REMARK 500 ALA A 92 49.24 -142.15 REMARK 500 ASN A 275 -10.64 -49.80 REMARK 500 LEU A 276 -13.30 65.04 REMARK 500 PRO A 320 38.37 -98.37 REMARK 500 ARG A 338 -95.53 -119.58 REMARK 500 ASP A 378 58.60 -101.68 REMARK 500 ASN A 427 41.09 -90.28 REMARK 500 THR A 495 -129.97 50.38 REMARK 500 LYS A 496 -122.86 60.53 REMARK 500 THR A 562 94.20 -51.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 275 LEU A 276 149.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JPP A 701 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6I1E RELATED DB: PDB REMARK 900 RELATED ID: 6R40 RELATED DB: PDB REMARK 900 RELATED ID: 6R3X RELATED DB: PDB REMARK 900 RELATED ID: 6HZR RELATED DB: PDB REMARK 900 RELATED ID: 4KQO RELATED DB: PDB REMARK 900 RELATED ID: 3PBO RELATED DB: PDB REMARK 900 RELATED ID: 3OC2 RELATED DB: PDB DBREF 6R42 A 50 579 UNP G3XD46 FTSI_PSEAE 50 579 SEQADV 6R42 GLY A 43 UNP G3XD46 EXPRESSION TAG SEQADV 6R42 PRO A 44 UNP G3XD46 EXPRESSION TAG SEQADV 6R42 GLY A 45 UNP G3XD46 EXPRESSION TAG SEQADV 6R42 TYR A 46 UNP G3XD46 EXPRESSION TAG SEQADV 6R42 GLN A 47 UNP G3XD46 EXPRESSION TAG SEQADV 6R42 ASP A 48 UNP G3XD46 EXPRESSION TAG SEQADV 6R42 PRO A 49 UNP G3XD46 EXPRESSION TAG SEQADV 6R42 CYS A 504 UNP G3XD46 ARG 504 CONFLICT SEQRES 1 A 537 GLY PRO GLY TYR GLN ASP PRO ALA ARG SER VAL ARG HIS SEQRES 2 A 537 ILE ALA ILE PRO ALA HIS ARG GLY LEU ILE THR ASP ARG SEQRES 3 A 537 ASN GLY GLU PRO LEU ALA VAL SER THR PRO VAL THR THR SEQRES 4 A 537 LEU TRP ALA ASN PRO LYS GLU LEU MET THR ALA LYS GLU SEQRES 5 A 537 ARG TRP PRO GLN LEU ALA ALA ALA LEU GLY GLN ASP THR SEQRES 6 A 537 LYS LEU PHE ALA ASP ARG ILE GLU GLN ASN ALA GLU ARG SEQRES 7 A 537 GLU PHE ILE TYR LEU VAL ARG GLY LEU THR PRO GLU GLN SEQRES 8 A 537 GLY GLU GLY VAL ILE ALA LEU LYS VAL PRO GLY VAL TYR SEQRES 9 A 537 SER ILE GLU GLU PHE ARG ARG PHE TYR PRO ALA GLY GLU SEQRES 10 A 537 VAL VAL ALA HIS ALA VAL GLY PHE THR ASP VAL ASP ASP SEQRES 11 A 537 ARG GLY ARG GLU GLY ILE GLU LEU ALA PHE ASP GLU TRP SEQRES 12 A 537 LEU ALA GLY VAL PRO GLY LYS ARG GLN VAL LEU LYS ASP SEQRES 13 A 537 ARG ARG GLY ARG VAL ILE LYS ASP VAL GLN VAL THR LYS SEQRES 14 A 537 ASN ALA LYS PRO GLY LYS THR LEU ALA LEU SER ILE ASP SEQRES 15 A 537 LEU ARG LEU GLN TYR LEU ALA HIS ARG GLU LEU ARG ASN SEQRES 16 A 537 ALA LEU LEU GLU ASN GLY ALA LYS ALA GLY SER LEU VAL SEQRES 17 A 537 ILE MET ASP VAL LYS THR GLY GLU ILE LEU ALA MET THR SEQRES 18 A 537 ASN GLN PRO THR TYR ASN PRO ASN ASN ARG ARG ASN LEU SEQRES 19 A 537 GLN PRO ALA ALA MET ARG ASN ARG ALA MET ILE ASP VAL SEQRES 20 A 537 PHE GLU PRO GLY SER THR VAL LYS PRO PHE SER MET SER SEQRES 21 A 537 ALA ALA LEU ALA SER GLY ARG TRP LYS PRO SER ASP ILE SEQRES 22 A 537 VAL ASP VAL TYR PRO GLY THR LEU GLN ILE GLY ARG TYR SEQRES 23 A 537 THR ILE ARG ASP VAL SER ARG ASN SER ARG GLN LEU ASP SEQRES 24 A 537 LEU THR GLY ILE LEU ILE LYS SER SER ASN VAL GLY ILE SEQRES 25 A 537 SER LYS ILE ALA PHE ASP ILE GLY ALA GLU SER ILE TYR SEQRES 26 A 537 SER VAL MET GLN GLN VAL GLY LEU GLY GLN ASP THR GLY SEQRES 27 A 537 LEU GLY PHE PRO GLY GLU ARG VAL GLY ASN LEU PRO ASN SEQRES 28 A 537 HIS ARG LYS TRP PRO LYS ALA GLU THR ALA THR LEU ALA SEQRES 29 A 537 TYR GLY TYR GLY LEU SER VAL THR ALA ILE GLN LEU ALA SEQRES 30 A 537 HIS ALA TYR ALA ALA LEU ALA ASN ASP GLY LYS SER VAL SEQRES 31 A 537 PRO LEU SER MET THR ARG VAL ASP ARG VAL PRO ASP GLY SEQRES 32 A 537 VAL GLN VAL ILE SER PRO GLU VAL ALA SER THR VAL GLN SEQRES 33 A 537 GLY MET LEU GLN GLN VAL VAL GLU ALA GLN GLY GLY VAL SEQRES 34 A 537 PHE ARG ALA GLN VAL PRO GLY TYR HIS ALA ALA GLY LYS SEQRES 35 A 537 SER GLY THR ALA ARG LYS VAL SER VAL GLY THR LYS GLY SEQRES 36 A 537 TYR ARG GLU ASN ALA TYR CYS SER LEU PHE ALA GLY PHE SEQRES 37 A 537 ALA PRO ALA THR ASP PRO ARG ILE ALA MET VAL VAL VAL SEQRES 38 A 537 ILE ASP GLU PRO SER LYS ALA GLY TYR PHE GLY GLY LEU SEQRES 39 A 537 VAL SER ALA PRO VAL PHE SER LYS VAL MET ALA GLY ALA SEQRES 40 A 537 LEU ARG LEU MET ASN VAL PRO PRO ASP ASN LEU PRO THR SEQRES 41 A 537 ALA THR GLU GLN GLN GLN VAL ASN ALA ALA PRO ALA LYS SEQRES 42 A 537 GLY GLY ARG GLY HET JPP A 701 36 HETNAM JPP PIPERACILLIN (OPEN FORM) FORMUL 2 JPP C23 H29 N5 O7 S FORMUL 3 HOH *118(H2 O) HELIX 1 AA1 ASN A 85 MET A 90 1 6 HELIX 2 AA2 THR A 91 GLU A 94 5 4 HELIX 3 AA3 ARG A 95 LEU A 103 1 9 HELIX 4 AA4 ASP A 106 ASN A 117 1 12 HELIX 5 AA5 THR A 130 ALA A 139 1 10 HELIX 6 AA6 ALA A 157 VAL A 160 5 4 HELIX 7 AA7 VAL A 161 GLY A 166 1 6 HELIX 8 AA8 GLU A 176 PHE A 182 1 7 HELIX 9 AA9 PHE A 182 GLY A 188 1 7 HELIX 10 AB1 ASP A 224 ASN A 242 1 19 HELIX 11 AB2 ASN A 272 LEU A 276 5 5 HELIX 12 AB3 GLN A 277 ARG A 282 5 6 HELIX 13 AB4 ASN A 283 ASP A 288 1 6 HELIX 14 AB5 PRO A 292 THR A 295 5 4 HELIX 15 AB6 VAL A 296 SER A 307 1 12 HELIX 16 AB7 LEU A 342 SER A 349 1 8 HELIX 17 AB8 SER A 350 GLY A 362 1 13 HELIX 18 AB9 GLY A 362 GLY A 374 1 13 HELIX 19 AC1 PRO A 398 GLY A 408 1 11 HELIX 20 AC2 THR A 414 ASN A 427 1 14 HELIX 21 AC3 SER A 450 ALA A 467 1 18 HELIX 22 AC4 VAL A 471 GLN A 475 5 5 HELIX 23 AC5 PHE A 533 SER A 538 1 6 HELIX 24 AC6 SER A 538 MET A 553 1 16 SHEET 1 AA1 3 SER A 52 ILE A 58 0 SHEET 2 AA1 3 GLY A 191 LYS A 197 -1 O LYS A 197 N SER A 52 SHEET 3 AA1 3 VAL A 203 LYS A 211 -1 O LYS A 205 N LEU A 196 SHEET 1 AA2 3 ILE A 123 LEU A 129 0 SHEET 2 AA2 3 PRO A 72 ALA A 84 -1 N THR A 80 O LEU A 129 SHEET 3 AA2 3 VAL A 145 PHE A 154 -1 O GLU A 150 N VAL A 79 SHEET 1 AA3 4 ILE A 123 LEU A 129 0 SHEET 2 AA3 4 PRO A 72 ALA A 84 -1 N THR A 80 O LEU A 129 SHEET 3 AA3 4 ILE A 65 THR A 66 -1 N ILE A 65 O LEU A 73 SHEET 4 AA3 4 LEU A 219 ALA A 220 1 O LEU A 219 N THR A 66 SHEET 1 AA4 5 ILE A 259 GLN A 265 0 SHEET 2 AA4 5 ALA A 246 ASP A 253 -1 N LEU A 249 O THR A 263 SHEET 3 AA4 5 ILE A 518 ASP A 525 -1 O ASP A 525 N ALA A 246 SHEET 4 AA4 5 TYR A 498 ALA A 511 -1 N SER A 505 O ILE A 524 SHEET 5 AA4 5 ALA A 482 VAL A 491 -1 N ALA A 482 O PHE A 510 SHEET 1 AA5 2 ILE A 315 ASP A 317 0 SHEET 2 AA5 2 GLN A 339 ASP A 341 -1 O LEU A 340 N VAL A 316 SHEET 1 AA6 2 THR A 322 ILE A 325 0 SHEET 2 AA6 2 TYR A 328 ARG A 331 -1 O TYR A 328 N ILE A 325 SHEET 1 AA7 2 LYS A 430 SER A 431 0 SHEET 2 AA7 2 VAL A 446 GLN A 447 -1 O VAL A 446 N SER A 431 CISPEP 1 GLN A 265 PRO A 266 0 -4.27 CISPEP 2 TYR A 319 PRO A 320 0 -2.37 CISPEP 3 ALA A 511 PRO A 512 0 -9.36 SITE 1 AC1 17 SER A 294 TYR A 328 VAL A 333 SER A 349 SITE 2 AC1 17 ASN A 351 TYR A 407 TYR A 409 SER A 485 SITE 3 AC1 17 GLY A 486 THR A 487 ALA A 488 ARG A 489 SITE 4 AC1 17 TYR A 498 PHE A 533 HOH A 811 HOH A 831 SITE 5 AC1 17 HOH A 853 CRYST1 68.440 82.640 88.760 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014611 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012101 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011266 0.00000