HEADER HYDROLASE 22-MAR-19 6R46 TITLE CRYSTAL STRUCTURE OF LPOR (THERMOSYNECHOCOCCUS ELONGATUS) COMPLEXED TITLE 2 WITH NADP+ AT 2.5A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: NADPH-PROTOCHLOROPHYLLIDE OXIDOREDUCTASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.3.1.33; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOSYNECHOCOCCUS ELONGATUS BP-1; SOURCE 3 ORGANISM_TAXID: 197221; SOURCE 4 GENE: POR; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PET-SUMO3 FUSION KEYWDS COMPLEX, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.ZHOU,L.FENG REVDAT 3 15-MAY-24 6R46 1 LINK REVDAT 2 13-MAY-20 6R46 1 JRNL REVDAT 1 30-OCT-19 6R46 0 JRNL AUTH S.ZHANG,D.J.HEYES,L.FENG,W.SUN,L.O.JOHANNISSEN,H.LIU, JRNL AUTH 2 C.W.LEVY,X.LI,J.YANG,X.YU,M.LIN,S.J.O.HARDMAN,R.HOEVEN, JRNL AUTH 3 M.SAKUMA,S.HAY,D.LEYS,Z.RAO,A.ZHOU,Q.CHENG,N.S.SCRUTTON JRNL TITL STRUCTURAL BASIS FOR ENZYMATIC PHOTOCATALYSIS IN CHLOROPHYLL JRNL TITL 2 BIOSYNTHESIS. JRNL REF NATURE V. 574 722 2019 JRNL REFN ESSN 1476-4687 JRNL PMID 31645759 JRNL DOI 10.1038/S41586-019-1685-2 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 78.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 19000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 976 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1358 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.23 REMARK 3 BIN R VALUE (WORKING SET) : 0.2880 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.3390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2140 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 57 REMARK 3 SOLVENT ATOMS : 20 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.86000 REMARK 3 B22 (A**2) : 0.86000 REMARK 3 B33 (A**2) : -2.78000 REMARK 3 B12 (A**2) : 0.43000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.233 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.216 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.158 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.784 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2236 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2104 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3032 ; 1.600 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4871 ; 1.001 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 271 ; 6.360 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 93 ;35.212 ;23.548 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 375 ;16.630 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;20.815 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 341 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2422 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 458 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1096 ; 2.357 ; 5.194 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1095 ; 2.348 ; 5.192 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1363 ; 3.748 ; 7.766 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1364 ; 3.748 ; 7.767 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1140 ; 2.912 ; 5.849 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1141 ; 2.911 ; 5.857 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1670 ; 4.778 ; 8.714 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2412 ; 8.307 ;61.513 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2412 ; 8.308 ;61.530 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 401 REMARK 3 ORIGIN FOR THE GROUP (A): -40.8526 -33.9259 -9.5193 REMARK 3 T TENSOR REMARK 3 T11: 0.1973 T22: 0.1759 REMARK 3 T33: 0.0654 T12: -0.0375 REMARK 3 T13: -0.0155 T23: 0.0717 REMARK 3 L TENSOR REMARK 3 L11: 0.3868 L22: 0.9418 REMARK 3 L33: 0.8905 L12: 0.2329 REMARK 3 L13: 0.3143 L23: -0.0484 REMARK 3 S TENSOR REMARK 3 S11: -0.1127 S12: 0.0942 S13: 0.1173 REMARK 3 S21: 0.2315 S22: -0.1068 S23: 0.0185 REMARK 3 S31: -0.0206 S32: 0.1758 S33: 0.2195 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6R46 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1292101417. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97776 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20005 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 78.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.71300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10MM ZNSO4,0.2M LI3CITRATE, 30% REMARK 280 PEG3350, EVAPORATION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 52.37500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 52.37500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 52.37500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 52.37500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 52.37500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 52.37500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -156.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 407 LIES ON A SPECIAL POSITION. REMARK 375 CL CL A 409 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 520 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 ASP A 0 REMARK 465 GLN A 1 REMARK 465 ARG A 147 REMARK 465 LYS A 148 REMARK 465 GLU A 149 REMARK 465 LEU A 150 REMARK 465 GLY A 151 REMARK 465 GLY A 152 REMARK 465 LYS A 153 REMARK 465 ILE A 154 REMARK 465 PRO A 155 REMARK 465 ILE A 156 REMARK 465 PRO A 157 REMARK 465 ALA A 158 REMARK 465 PRO A 228 REMARK 465 LEU A 229 REMARK 465 PHE A 230 REMARK 465 ARG A 231 REMARK 465 HIS A 232 REMARK 465 HIS A 233 REMARK 465 PHE A 234 REMARK 465 PRO A 235 REMARK 465 LEU A 236 REMARK 465 PHE A 237 REMARK 465 GLN A 238 REMARK 465 LYS A 239 REMARK 465 LEU A 240 REMARK 465 PHE A 241 REMARK 465 PRO A 242 REMARK 465 LEU A 243 REMARK 465 PHE A 244 REMARK 465 GLN A 245 REMARK 465 LYS A 246 REMARK 465 LYS A 247 REMARK 465 ILE A 248 REMARK 465 THR A 249 REMARK 465 GLY A 250 REMARK 465 GLY A 251 REMARK 465 ASN A 282 REMARK 465 ARG A 283 REMARK 465 GLN A 284 REMARK 465 LYS A 285 REMARK 465 GLU A 286 REMARK 465 GLY A 287 REMARK 465 ARG A 288 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 106 127.00 -38.38 REMARK 500 HIS A 113 -68.19 -101.15 REMARK 500 ASP A 134 79.03 -108.06 REMARK 500 ALA A 225 93.05 -64.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 58 ND1 REMARK 620 2 HIS A 58 ND1 0.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 209 NE2 REMARK 620 2 GLU A 210 OE1 77.7 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 409 DBREF 6R46 A -1 319 UNP Q8DLC1 Q8DLC1_THEEB 2 322 SEQADV 6R46 GLY A -2 UNP Q8DLC1 EXPRESSION TAG SEQADV 6R46 PHE A 190 UNP Q8DLC1 TYR 193 CONFLICT SEQRES 1 A 322 GLY SER ASP GLN PRO ARG PRO THR VAL ILE ILE THR GLY SEQRES 2 A 322 ALA SER SER GLY VAL GLY LEU TYR ALA THR LYS ALA LEU SEQRES 3 A 322 ALA ASN ARG GLY TRP HIS VAL ILE MET ALA CYS ARG ASN SEQRES 4 A 322 LEU GLU LYS ALA GLU GLN ALA ALA LYS ASN LEU GLN ILE SEQRES 5 A 322 PRO PRO GLU ALA TYR THR ILE LEU HIS LEU ASP LEU SER SEQRES 6 A 322 SER LEU ALA SER VAL ARG GLY PHE VAL GLU SER PHE ARG SEQRES 7 A 322 ALA LEU ASN ARG PRO LEU ARG ALA LEU VAL CYS ASN ALA SEQRES 8 A 322 ALA VAL TYR TYR PRO LEU LEU LYS GLU PRO ILE TYR SER SEQRES 9 A 322 VAL ASP GLY TYR GLU ILE THR VAL ALA THR ASN HIS LEU SEQRES 10 A 322 GLY HIS PHE LEU LEU ILE ASN LEU LEU LEU GLU ASP LEU SEQRES 11 A 322 LYS ASN SER PRO GLU SER ASP LYS ARG LEU VAL ILE LEU SEQRES 12 A 322 GLY THR VAL THR ALA ASN ARG LYS GLU LEU GLY GLY LYS SEQRES 13 A 322 ILE PRO ILE PRO ALA PRO PRO ASP LEU GLY ASN LEU GLU SEQRES 14 A 322 GLY PHE GLU LYS GLY PHE LYS LYS PRO ILE ALA MET ILE SEQRES 15 A 322 ASN GLY LYS PRO PHE LYS SER GLY LYS ALA PHE LYS ASP SEQRES 16 A 322 SER LYS LEU CYS ASN MET LEU THR ALA ARG GLU LEU HIS SEQRES 17 A 322 ARG ARG PHE HIS GLU SER THR GLY ILE VAL PHE ASN SER SEQRES 18 A 322 LEU TYR PRO GLY CYS VAL ALA ASP THR PRO LEU PHE ARG SEQRES 19 A 322 HIS HIS PHE PRO LEU PHE GLN LYS LEU PHE PRO LEU PHE SEQRES 20 A 322 GLN LYS LYS ILE THR GLY GLY TYR VAL SER GLN GLU LEU SEQRES 21 A 322 ALA GLY GLU ARG VAL ALA MET VAL VAL ALA ASP PRO GLU SEQRES 22 A 322 PHE ARG GLN SER GLY VAL HIS TRP SER TRP GLY ASN ARG SEQRES 23 A 322 GLN LYS GLU GLY ARG LYS ALA PHE VAL GLN GLU LEU SER SEQRES 24 A 322 ALA GLU ALA SER ASP GLU GLN LYS ALA ARG ARG LEU TRP SEQRES 25 A 322 GLU LEU SER GLU LYS LEU VAL GLY LEU ALA HET NAP A 401 48 HET ZN A 402 1 HET ZN A 403 1 HET ZN A 404 1 HET ZN A 405 1 HET ZN A 406 1 HET CL A 407 1 HET CL A 408 1 HET CL A 409 1 HET CL A 410 1 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 2 NAP C21 H28 N7 O17 P3 FORMUL 3 ZN 5(ZN 2+) FORMUL 8 CL 4(CL 1-) FORMUL 12 HOH *20(H2 O) HELIX 1 AA1 SER A 13 ARG A 26 1 14 HELIX 2 AA2 ASN A 36 LEU A 47 1 12 HELIX 3 AA3 PRO A 50 GLU A 52 5 3 HELIX 4 AA4 SER A 63 LEU A 77 1 15 HELIX 5 AA5 GLU A 106 HIS A 113 1 8 HELIX 6 AA6 HIS A 113 SER A 130 1 18 HELIX 7 AA7 LEU A 165 LYS A 170 1 6 HELIX 8 AA8 LYS A 185 GLY A 213 1 29 HELIX 9 AA9 SER A 254 ASP A 268 1 15 HELIX 10 AB1 PRO A 269 ARG A 272 5 4 HELIX 11 AB2 GLU A 298 SER A 300 5 3 HELIX 12 AB3 ASP A 301 VAL A 316 1 16 SHEET 1 AA1 8 TYR A 54 HIS A 58 0 SHEET 2 AA1 8 HIS A 29 CYS A 34 1 N MET A 32 O THR A 55 SHEET 3 AA1 8 THR A 5 THR A 9 1 N VAL A 6 O ILE A 31 SHEET 4 AA1 8 LEU A 81 CYS A 86 1 O VAL A 85 N ILE A 7 SHEET 5 AA1 8 ARG A 136 LEU A 140 1 O VAL A 138 N CYS A 86 SHEET 6 AA1 8 VAL A 215 TYR A 220 1 O VAL A 215 N LEU A 137 SHEET 7 AA1 8 VAL A 276 SER A 279 1 O TRP A 278 N SER A 218 SHEET 8 AA1 8 PHE A 291 GLU A 294 -1 O PHE A 291 N SER A 279 LINK ND1 HIS A 58 ZN ZN A 402 1555 1555 1.88 LINK ND1 HIS A 58 ZN ZN A 402 1555 12554 2.19 LINK NE2 HIS A 209 ZN ZN A 404 1555 1555 2.22 LINK OE1 GLU A 210 ZN ZN A 404 1555 7555 2.18 CISPEP 1 LYS A 174 PRO A 175 0 11.93 SITE 1 AC1 19 GLY A 10 SER A 12 SER A 13 GLY A 14 SITE 2 AC1 19 VAL A 15 GLY A 16 CYS A 34 ARG A 35 SITE 3 AC1 19 LEU A 59 ASP A 60 LEU A 61 ASN A 87 SITE 4 AC1 19 ALA A 89 VAL A 90 THR A 111 LYS A 194 SITE 5 AC1 19 TYR A 220 CYS A 223 VAL A 224 SITE 1 AC2 3 HIS A 58 CL A 408 CL A 409 SITE 1 AC3 3 HIS A 113 ASN A 197 THR A 200 SITE 1 AC4 4 HIS A 209 GLU A 210 ZN A 405 CL A 407 SITE 1 AC5 3 HIS A 209 GLU A 210 ZN A 404 SITE 1 AC6 3 SER A 296 GLU A 302 ARG A 306 SITE 1 AC7 1 ZN A 404 SITE 1 AC8 4 LEU A 37 SER A 66 ZN A 402 CL A 409 SITE 1 AC9 3 HIS A 58 ZN A 402 CL A 408 CRYST1 134.950 134.950 104.750 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007410 0.004278 0.000000 0.00000 SCALE2 0.000000 0.008557 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009547 0.00000