HEADER HYDROLASE 22-MAR-19 6R48 TITLE CRYSTAL STRUCTURE OF LPOR (SYNECHOCYSTIS) COMPLEXED WITH NADPH AT TITLE 2 1.87A RESOLUTION. COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIGHT-DEPENDENT PROTOCHLOROPHYLLIDE REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PCR,NADPH-PROTOCHLOROPHYLLIDE OXIDOREDUCTASE,POR; COMPND 5 EC: 1.3.1.33; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCYSTIS SP. PCC 6803 SUBSTR. KAZUSA; SOURCE 3 ORGANISM_TAXID: 1111708; SOURCE 4 GENE: POR, PCR, SLR0506; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COMPLEX, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.ZHOU,L.FENG REVDAT 4 15-MAY-24 6R48 1 REMARK REVDAT 3 13-MAY-20 6R48 1 JRNL REVDAT 2 06-NOV-19 6R48 1 TITLE REVDAT 1 30-OCT-19 6R48 0 JRNL AUTH S.ZHANG,D.J.HEYES,L.FENG,W.SUN,L.O.JOHANNISSEN,H.LIU, JRNL AUTH 2 C.W.LEVY,X.LI,J.YANG,X.YU,M.LIN,S.J.O.HARDMAN,R.HOEVEN, JRNL AUTH 3 M.SAKUMA,S.HAY,D.LEYS,Z.RAO,A.ZHOU,Q.CHENG,N.S.SCRUTTON JRNL TITL STRUCTURAL BASIS FOR ENZYMATIC PHOTOCATALYSIS IN CHLOROPHYLL JRNL TITL 2 BIOSYNTHESIS. JRNL REF NATURE V. 574 722 2019 JRNL REFN ESSN 1476-4687 JRNL PMID 31645759 JRNL DOI 10.1038/S41586-019-1685-2 REMARK 2 REMARK 2 RESOLUTION. 1.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 3 NUMBER OF REFLECTIONS : 49150 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2642 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.87 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.92 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3223 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 200 REMARK 3 BIN FREE R VALUE : 0.2710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4761 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 97 REMARK 3 SOLVENT ATOMS : 416 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.64000 REMARK 3 B22 (A**2) : -0.47000 REMARK 3 B33 (A**2) : 1.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.143 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.126 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.092 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.906 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4984 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4785 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6747 ; 1.472 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11013 ; 1.194 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 597 ; 6.325 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 213 ;37.123 ;23.615 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 851 ;12.963 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;14.876 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 736 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5475 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1158 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2406 ; 1.062 ; 1.878 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2405 ; 1.060 ; 1.877 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2993 ; 1.868 ; 2.792 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2994 ; 1.868 ; 2.793 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2577 ; 1.175 ; 2.033 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2578 ; 1.175 ; 2.033 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3753 ; 2.014 ; 2.987 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6019 ; 5.330 ;15.835 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5831 ; 4.975 ;15.334 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 318 B 1 318 36488 0.10 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 318 REMARK 3 ORIGIN FOR THE GROUP (A): 42.3863 43.1009 22.1412 REMARK 3 T TENSOR REMARK 3 T11: 0.0198 T22: 0.0098 REMARK 3 T33: 0.0505 T12: 0.0048 REMARK 3 T13: -0.0096 T23: -0.0140 REMARK 3 L TENSOR REMARK 3 L11: 0.6290 L22: 0.6707 REMARK 3 L33: 0.2341 L12: 0.0911 REMARK 3 L13: 0.3205 L23: 0.1142 REMARK 3 S TENSOR REMARK 3 S11: 0.0027 S12: 0.0248 S13: 0.0352 REMARK 3 S21: -0.0407 S22: 0.0323 S23: 0.0096 REMARK 3 S31: 0.0195 S32: 0.0356 S33: -0.0350 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 318 REMARK 3 ORIGIN FOR THE GROUP (A): 45.4572 66.0081 59.1453 REMARK 3 T TENSOR REMARK 3 T11: 0.0175 T22: 0.0131 REMARK 3 T33: 0.0414 T12: -0.0006 REMARK 3 T13: -0.0014 T23: -0.0028 REMARK 3 L TENSOR REMARK 3 L11: 0.7717 L22: 1.1041 REMARK 3 L33: 0.0575 L12: -0.4202 REMARK 3 L13: -0.2052 L23: 0.1320 REMARK 3 S TENSOR REMARK 3 S11: 0.0781 S12: 0.0099 S13: -0.0136 REMARK 3 S21: 0.0126 S22: -0.0916 S23: -0.0359 REMARK 3 S31: -0.0199 S32: -0.0073 S33: 0.0135 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6R48 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1292101418. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97851 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51836 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.870 REMARK 200 RESOLUTION RANGE LOW (A) : 28.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.88100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10MM ZNSO4,0.2M LI3CITRATE, 30% REMARK 280 PEG3350, EVAPORATION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 28.48000 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 77.99500 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 28.48000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 77.99500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 146 REMARK 465 LYS A 147 REMARK 465 GLU A 148 REMARK 465 LEU A 149 REMARK 465 GLY A 150 REMARK 465 GLY A 151 REMARK 465 ASN A 246 REMARK 465 VAL A 247 REMARK 465 THR A 248 REMARK 465 LYS A 249 REMARK 465 GLY A 250 REMARK 465 GLY A 280 REMARK 465 ASN A 281 REMARK 465 ARG A 282 REMARK 465 GLN A 283 REMARK 465 GLN A 284 REMARK 465 VAL A 291 REMARK 465 GLN A 292 REMARK 465 GLU A 293 REMARK 465 LEU A 294 REMARK 465 SER A 295 REMARK 465 GLU A 296 REMARK 465 GLN A 297 REMARK 465 GLY A 298 REMARK 465 ASN B 281 REMARK 465 ARG B 282 REMARK 465 VAL B 291 REMARK 465 GLN B 292 REMARK 465 GLU B 293 REMARK 465 LEU B 294 REMARK 465 SER B 295 REMARK 465 GLU B 296 REMARK 465 GLN B 297 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 112 -63.90 -103.41 REMARK 500 PRO A 154 52.21 -108.49 REMARK 500 ASP A 160 110.57 -161.91 REMARK 500 LYS A 173 132.57 -39.48 REMARK 500 PRO A 241 30.54 -78.63 REMARK 500 PHE B 91 79.76 -110.86 REMARK 500 LEU B 93 58.79 -109.57 REMARK 500 HIS B 112 -65.88 -100.79 REMARK 500 LYS B 173 132.24 -37.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NDP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NDP B 401 DBREF 6R48 A 1 318 UNP Q59987 POR_SYNY3 5 322 DBREF 6R48 B 1 318 UNP Q59987 POR_SYNY3 5 322 SEQRES 1 A 318 MET LYS PRO THR VAL ILE ILE THR GLY ALA SER SER GLY SEQRES 2 A 318 VAL GLY LEU TYR GLY ALA LYS ALA LEU ILE ASP LYS GLY SEQRES 3 A 318 TRP HIS VAL ILE MET ALA CYS ARG ASN LEU ASP LYS THR SEQRES 4 A 318 GLN LYS VAL ALA ASP GLU LEU GLY PHE PRO LYS ASP SER SEQRES 5 A 318 TYR THR ILE ILE LYS LEU ASP LEU GLY TYR LEU ASP SER SEQRES 6 A 318 VAL ARG ARG PHE VAL ALA GLN PHE ARG GLU LEU GLY ARG SEQRES 7 A 318 PRO LEU LYS ALA LEU VAL CYS ASN ALA ALA VAL TYR PHE SEQRES 8 A 318 PRO LEU LEU ASP GLU PRO LEU TRP SER ALA ASP ASP TYR SEQRES 9 A 318 GLU LEU SER VAL ALA THR ASN HIS LEU GLY HIS PHE LEU SEQRES 10 A 318 LEU CYS ASN LEU LEU LEU GLU ASP LEU LYS ALA CYS PRO SEQRES 11 A 318 ASP ALA ASP LYS ARG LEU ILE ILE LEU GLY THR VAL THR SEQRES 12 A 318 ALA ASN SER LYS GLU LEU GLY GLY LYS ILE PRO ILE PRO SEQRES 13 A 318 ALA PRO PRO ASP LEU GLY ASN PHE GLU GLY PHE GLU ALA SEQRES 14 A 318 GLY PHE LYS LYS PRO ILE ALA MET ILE ASN ASN LYS LYS SEQRES 15 A 318 PHE LYS SER GLY LYS ALA TYR LYS ASP SER LYS LEU CYS SEQRES 16 A 318 ASN MET LEU THR THR ARG GLU LEU HIS ARG ARG PHE HIS SEQRES 17 A 318 GLN GLU THR GLY ILE VAL PHE ASN SER LEU TYR PRO GLY SEQRES 18 A 318 CYS VAL ALA ASP THR PRO LEU PHE ARG ASN HIS TYR SER SEQRES 19 A 318 LEU PHE ARG THR ILE PHE PRO TRP PHE GLN LYS ASN VAL SEQRES 20 A 318 THR LYS GLY TYR VAL SER GLN GLU LEU ALA GLY GLU ARG SEQRES 21 A 318 VAL ALA MET VAL VAL ALA ASP ASP LYS PHE LYS ASP SER SEQRES 22 A 318 GLY VAL HIS TRP SER TRP GLY ASN ARG GLN GLN ALA GLY SEQRES 23 A 318 ARG GLU ALA PHE VAL GLN GLU LEU SER GLU GLN GLY SER SEQRES 24 A 318 ASP ALA GLN LYS ALA GLN ARG MET TRP ASP LEU SER GLU SEQRES 25 A 318 LYS LEU VAL GLY LEU VAL SEQRES 1 B 318 MET LYS PRO THR VAL ILE ILE THR GLY ALA SER SER GLY SEQRES 2 B 318 VAL GLY LEU TYR GLY ALA LYS ALA LEU ILE ASP LYS GLY SEQRES 3 B 318 TRP HIS VAL ILE MET ALA CYS ARG ASN LEU ASP LYS THR SEQRES 4 B 318 GLN LYS VAL ALA ASP GLU LEU GLY PHE PRO LYS ASP SER SEQRES 5 B 318 TYR THR ILE ILE LYS LEU ASP LEU GLY TYR LEU ASP SER SEQRES 6 B 318 VAL ARG ARG PHE VAL ALA GLN PHE ARG GLU LEU GLY ARG SEQRES 7 B 318 PRO LEU LYS ALA LEU VAL CYS ASN ALA ALA VAL TYR PHE SEQRES 8 B 318 PRO LEU LEU ASP GLU PRO LEU TRP SER ALA ASP ASP TYR SEQRES 9 B 318 GLU LEU SER VAL ALA THR ASN HIS LEU GLY HIS PHE LEU SEQRES 10 B 318 LEU CYS ASN LEU LEU LEU GLU ASP LEU LYS ALA CYS PRO SEQRES 11 B 318 ASP ALA ASP LYS ARG LEU ILE ILE LEU GLY THR VAL THR SEQRES 12 B 318 ALA ASN SER LYS GLU LEU GLY GLY LYS ILE PRO ILE PRO SEQRES 13 B 318 ALA PRO PRO ASP LEU GLY ASN PHE GLU GLY PHE GLU ALA SEQRES 14 B 318 GLY PHE LYS LYS PRO ILE ALA MET ILE ASN ASN LYS LYS SEQRES 15 B 318 PHE LYS SER GLY LYS ALA TYR LYS ASP SER LYS LEU CYS SEQRES 16 B 318 ASN MET LEU THR THR ARG GLU LEU HIS ARG ARG PHE HIS SEQRES 17 B 318 GLN GLU THR GLY ILE VAL PHE ASN SER LEU TYR PRO GLY SEQRES 18 B 318 CYS VAL ALA ASP THR PRO LEU PHE ARG ASN HIS TYR SER SEQRES 19 B 318 LEU PHE ARG THR ILE PHE PRO TRP PHE GLN LYS ASN VAL SEQRES 20 B 318 THR LYS GLY TYR VAL SER GLN GLU LEU ALA GLY GLU ARG SEQRES 21 B 318 VAL ALA MET VAL VAL ALA ASP ASP LYS PHE LYS ASP SER SEQRES 22 B 318 GLY VAL HIS TRP SER TRP GLY ASN ARG GLN GLN ALA GLY SEQRES 23 B 318 ARG GLU ALA PHE VAL GLN GLU LEU SER GLU GLN GLY SER SEQRES 24 B 318 ASP ALA GLN LYS ALA GLN ARG MET TRP ASP LEU SER GLU SEQRES 25 B 318 LYS LEU VAL GLY LEU VAL HET NDP A 401 48 HET CL A 402 1 HET NDP B 401 48 HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE HETNAM CL CHLORIDE ION FORMUL 3 NDP 2(C21 H30 N7 O17 P3) FORMUL 4 CL CL 1- FORMUL 6 HOH *416(H2 O) HELIX 1 AA1 SER A 12 LYS A 25 1 14 HELIX 2 AA2 ASN A 35 LEU A 46 1 12 HELIX 3 AA3 PRO A 49 ASP A 51 5 3 HELIX 4 AA4 TYR A 62 LEU A 76 1 15 HELIX 5 AA5 GLU A 105 HIS A 112 1 8 HELIX 6 AA6 HIS A 112 CYS A 129 1 18 HELIX 7 AA7 PHE A 164 ALA A 169 1 6 HELIX 8 AA8 LYS A 184 GLY A 212 1 29 HELIX 9 AA9 THR A 226 PHE A 240 1 15 HELIX 10 AB1 SER A 253 ASP A 267 1 15 HELIX 11 AB2 ASP A 268 LYS A 271 5 4 HELIX 12 AB3 ASP A 300 VAL A 315 1 16 HELIX 13 AB4 SER B 12 LYS B 25 1 14 HELIX 14 AB5 ASN B 35 LEU B 46 1 12 HELIX 15 AB6 PRO B 49 ASP B 51 5 3 HELIX 16 AB7 TYR B 62 LEU B 76 1 15 HELIX 17 AB8 GLU B 105 HIS B 112 1 8 HELIX 18 AB9 HIS B 112 CYS B 129 1 18 HELIX 19 AC1 ASN B 145 GLY B 150 5 6 HELIX 20 AC2 PHE B 164 ALA B 169 1 6 HELIX 21 AC3 LYS B 184 GLY B 212 1 29 HELIX 22 AC4 PHE B 229 PHE B 240 1 12 HELIX 23 AC5 GLN B 244 THR B 248 5 5 HELIX 24 AC6 SER B 253 ASP B 267 1 15 HELIX 25 AC7 ASP B 268 LYS B 271 5 4 HELIX 26 AC8 SER B 299 VAL B 315 1 17 SHEET 1 AA1 8 TYR A 53 LYS A 57 0 SHEET 2 AA1 8 HIS A 28 CYS A 33 1 N MET A 31 O THR A 54 SHEET 3 AA1 8 THR A 4 THR A 8 1 N VAL A 5 O ILE A 30 SHEET 4 AA1 8 LEU A 80 CYS A 85 1 O VAL A 84 N ILE A 6 SHEET 5 AA1 8 ARG A 135 LEU A 139 1 O ILE A 137 N CYS A 85 SHEET 6 AA1 8 VAL A 214 TYR A 219 1 O VAL A 214 N LEU A 136 SHEET 7 AA1 8 VAL A 275 SER A 278 1 O TRP A 277 N TYR A 219 SHEET 8 AA1 8 GLY A 286 ALA A 289 -1 O GLY A 286 N SER A 278 SHEET 1 AA2 8 TYR B 53 LYS B 57 0 SHEET 2 AA2 8 HIS B 28 CYS B 33 1 N MET B 31 O THR B 54 SHEET 3 AA2 8 THR B 4 THR B 8 1 N VAL B 5 O ILE B 30 SHEET 4 AA2 8 LEU B 80 CYS B 85 1 O VAL B 84 N ILE B 6 SHEET 5 AA2 8 ARG B 135 LEU B 139 1 O ILE B 137 N LEU B 83 SHEET 6 AA2 8 VAL B 214 TYR B 219 1 O VAL B 214 N LEU B 136 SHEET 7 AA2 8 VAL B 275 SER B 278 1 O TRP B 277 N TYR B 219 SHEET 8 AA2 8 GLY B 286 ALA B 289 -1 O GLY B 286 N SER B 278 CISPEP 1 ILE A 153 PRO A 154 0 -16.08 CISPEP 2 LYS A 173 PRO A 174 0 9.97 CISPEP 3 ILE B 153 PRO B 154 0 2.61 CISPEP 4 LYS B 173 PRO B 174 0 10.49 SITE 1 AC1 34 GLY A 9 SER A 11 SER A 12 GLY A 13 SITE 2 AC1 34 VAL A 14 ARG A 34 LYS A 38 LEU A 58 SITE 3 AC1 34 ASP A 59 LEU A 60 GLY A 61 ASN A 86 SITE 4 AC1 34 ALA A 87 ALA A 88 VAL A 89 THR A 110 SITE 5 AC1 34 LEU A 139 GLY A 140 TYR A 189 LYS A 193 SITE 6 AC1 34 TYR A 219 GLY A 221 VAL A 223 THR A 226 SITE 7 AC1 34 PRO A 227 LEU A 228 HOH A 543 HOH A 552 SITE 8 AC1 34 HOH A 557 HOH A 571 HOH A 584 HOH A 613 SITE 9 AC1 34 HOH A 629 HOH A 657 SITE 1 AC2 3 LYS A 2 ARG A 78 HOH A 560 SITE 1 AC3 34 GLY B 9 SER B 11 SER B 12 GLY B 13 SITE 2 AC3 34 VAL B 14 ARG B 34 LYS B 38 LEU B 58 SITE 3 AC3 34 ASP B 59 LEU B 60 GLY B 61 ASN B 86 SITE 4 AC3 34 ALA B 87 ALA B 88 VAL B 89 THR B 110 SITE 5 AC3 34 LEU B 139 GLY B 140 TYR B 189 LYS B 193 SITE 6 AC3 34 TYR B 219 VAL B 223 THR B 226 PRO B 227 SITE 7 AC3 34 LEU B 228 HOH B 521 HOH B 526 HOH B 545 SITE 8 AC3 34 HOH B 549 HOH B 566 HOH B 580 HOH B 598 SITE 9 AC3 34 HOH B 608 HOH B 655 CRYST1 56.960 72.890 155.990 90.00 90.00 90.00 P 21 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017556 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013719 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006411 0.00000