HEADER HYDROLASE 24-MAR-19 6R53 TITLE CRYSTAL STRUCTURE OF PPEP-1(K101R) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRO-PRO ENDOPEPTIDASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PPEP-1,ZINC METALLOPROTEASE ZMP1; COMPND 5 EC: 3.4.24.89; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PEPTOCLOSTRIDIUM DIFFICILE; SOURCE 3 ORGANISM_TAXID: 1496; SOURCE 4 GENE: ZMP1, PPEP-1, CD630_28300; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: STAR KEYWDS PRO-PRO ENDOPEPTIDASE 1, ZINC METALLOPEPTIDASE, CLOSTRIDIUM KEYWDS 2 DIFFICILE, VIRULENCE FACTOR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.PICHLO,U.BAUMANN REVDAT 4 24-JAN-24 6R53 1 LINK REVDAT 3 07-AUG-19 6R53 1 JRNL REVDAT 2 26-JUN-19 6R53 1 JRNL REVDAT 1 12-JUN-19 6R53 0 JRNL AUTH C.PICHLO,L.JUETTEN,F.WOJTALLA,M.SCHACHERL,D.DIAZ,U.BAUMANN JRNL TITL MOLECULAR DETERMINANTS OF THE MECHANISM AND SUBSTRATE JRNL TITL 2 SPECIFICITY OFCLOSTRIDIUM DIFFICILEPROLINE-PROLINE JRNL TITL 3 ENDOPEPTIDASE-1. JRNL REF J.BIOL.CHEM. V. 294 11525 2019 JRNL REFN ESSN 1083-351X JRNL PMID 31182482 JRNL DOI 10.1074/JBC.RA119.009029 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_3395: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.460 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 34685 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1733 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.5741 - 4.1163 1.00 2954 156 0.1741 0.2150 REMARK 3 2 4.1163 - 3.2675 1.00 2806 147 0.1513 0.1914 REMARK 3 3 3.2675 - 2.8546 1.00 2779 146 0.1700 0.1702 REMARK 3 4 2.8546 - 2.5936 1.00 2767 146 0.1749 0.1839 REMARK 3 5 2.5936 - 2.4077 1.00 2736 145 0.1705 0.2312 REMARK 3 6 2.4077 - 2.2658 1.00 2723 143 0.1684 0.2110 REMARK 3 7 2.2658 - 2.1523 1.00 2741 145 0.1769 0.2111 REMARK 3 8 2.1523 - 2.0586 1.00 2719 144 0.1871 0.2365 REMARK 3 9 2.0586 - 1.9794 1.00 2726 142 0.2211 0.2645 REMARK 3 10 1.9794 - 1.9111 1.00 2722 143 0.2512 0.2960 REMARK 3 11 1.9111 - 1.8513 1.00 2687 143 0.2691 0.3110 REMARK 3 12 1.8513 - 1.7984 0.96 2592 133 0.3000 0.3788 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3231 REMARK 3 ANGLE : 0.544 4378 REMARK 3 CHIRALITY : 0.038 471 REMARK 3 PLANARITY : 0.003 574 REMARK 3 DIHEDRAL : 11.522 1930 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 26 THROUGH 153) REMARK 3 ORIGIN FOR THE GROUP (A): -6.3266 -41.0216 8.6947 REMARK 3 T TENSOR REMARK 3 T11: 0.1433 T22: 0.1504 REMARK 3 T33: 0.1043 T12: -0.0252 REMARK 3 T13: 0.0159 T23: -0.0264 REMARK 3 L TENSOR REMARK 3 L11: 1.7554 L22: 1.4810 REMARK 3 L33: 2.5015 L12: -0.0790 REMARK 3 L13: -0.1470 L23: -0.0892 REMARK 3 S TENSOR REMARK 3 S11: -0.0909 S12: 0.1063 S13: -0.0776 REMARK 3 S21: -0.0489 S22: 0.0903 S23: 0.0108 REMARK 3 S31: 0.0941 S32: -0.0478 S33: -0.0184 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 154 THROUGH 401) REMARK 3 ORIGIN FOR THE GROUP (A): 9.9952 -38.2788 17.9937 REMARK 3 T TENSOR REMARK 3 T11: 0.1216 T22: 0.1334 REMARK 3 T33: 0.1453 T12: -0.0265 REMARK 3 T13: -0.0039 T23: -0.0345 REMARK 3 L TENSOR REMARK 3 L11: 2.3569 L22: 2.2898 REMARK 3 L33: 2.2954 L12: -0.2098 REMARK 3 L13: 0.2304 L23: -0.2659 REMARK 3 S TENSOR REMARK 3 S11: -0.0980 S12: 0.0016 S13: -0.0042 REMARK 3 S21: 0.0957 S22: 0.0588 S23: -0.3224 REMARK 3 S31: -0.0964 S32: 0.1697 S33: 0.0234 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 23 THROUGH 130) REMARK 3 ORIGIN FOR THE GROUP (A): -6.6216 -4.9993 11.8538 REMARK 3 T TENSOR REMARK 3 T11: 0.1294 T22: 0.1799 REMARK 3 T33: 0.1179 T12: -0.0078 REMARK 3 T13: 0.0098 T23: -0.0268 REMARK 3 L TENSOR REMARK 3 L11: 1.5004 L22: 1.4743 REMARK 3 L33: 2.1418 L12: -0.0159 REMARK 3 L13: -0.3919 L23: -0.6465 REMARK 3 S TENSOR REMARK 3 S11: -0.0347 S12: 0.1654 S13: -0.0822 REMARK 3 S21: 0.0290 S22: 0.0522 S23: 0.0480 REMARK 3 S31: 0.0457 S32: -0.2132 S33: -0.0180 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 131 THROUGH 401) REMARK 3 ORIGIN FOR THE GROUP (A): 7.8455 -3.3522 20.6080 REMARK 3 T TENSOR REMARK 3 T11: 0.1178 T22: 0.1119 REMARK 3 T33: 0.1050 T12: -0.0094 REMARK 3 T13: 0.0035 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 2.6087 L22: 1.8789 REMARK 3 L33: 2.5313 L12: -0.3665 REMARK 3 L13: -0.1010 L23: -0.1559 REMARK 3 S TENSOR REMARK 3 S11: -0.0244 S12: -0.0314 S13: -0.0041 REMARK 3 S21: 0.0421 S22: 0.0021 S23: -0.1336 REMARK 3 S31: -0.0471 S32: 0.2052 S33: 0.0162 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6R53 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1292100026. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JUN 17, 2015 REMARK 200 DATA SCALING SOFTWARE : XDS JUN 17, 2015 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34718 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.798 REMARK 200 RESOLUTION RANGE LOW (A) : 45.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5A0P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 NL 12 MG PER ML RPPEP-1 K101R IN REMARK 280 20 MM TRIS PH 7.5, 200 MM NACL WAS MIXED WITH 100 NL PRECIPITANT REMARK 280 SOLUTION CONTAINING: 100 MM TRIS PH 8.5, 1.8 M AMMONIUM REMARK 280 PHOSPHATE DIBASIC. RESERVIOR VOLUME: 60 MICROL, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.57500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.93000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.91500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.93000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.57500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.91500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 23 REMARK 465 SER A 24 REMARK 465 HIS A 25 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD22 ASN B 129 O HOH B 401 1.27 REMARK 500 HD22 ASN B 63 O HOH B 402 1.56 REMARK 500 HH11 ARG A 124 O HOH A 409 1.59 REMARK 500 OE2 GLU B 143 HO3 TRS B 302 1.59 REMARK 500 O HOH B 501 O HOH B 570 1.78 REMARK 500 O HOH A 572 O HOH A 591 1.80 REMARK 500 OE1 GLN A 40 O HOH A 401 1.87 REMARK 500 O HOH A 492 O HOH A 556 1.88 REMARK 500 O HOH B 444 O HOH B 533 1.93 REMARK 500 O HOH B 449 O HOH B 596 1.96 REMARK 500 O HOH B 430 O HOH B 561 1.99 REMARK 500 O HOH B 573 O HOH B 619 2.00 REMARK 500 O HOH A 526 O HOH A 557 2.00 REMARK 500 O HOH A 534 O HOH A 571 2.00 REMARK 500 ND2 ASN A 52 O HOH A 402 2.01 REMARK 500 O HOH A 463 O HOH A 598 2.02 REMARK 500 O HOH A 513 O HOH A 560 2.03 REMARK 500 O HOH B 486 O HOH B 609 2.04 REMARK 500 O HOH A 549 O HOH A 573 2.04 REMARK 500 ND2 ASN B 129 O HOH B 401 2.05 REMARK 500 O HOH B 485 O HOH B 613 2.06 REMARK 500 O HOH B 401 O HOH B 616 2.09 REMARK 500 O HOH A 430 O HOH A 585 2.10 REMARK 500 O HOH A 515 O HOH A 591 2.12 REMARK 500 ND2 ASN B 63 O HOH B 402 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HE22 GLN A 40 OD1 ASN B 48 4545 1.50 REMARK 500 O HOH A 591 O HOH B 600 3545 2.01 REMARK 500 O HOH A 537 O HOH B 603 3645 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 178 -69.83 -129.54 REMARK 500 TYR B 178 -70.90 -128.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 142 NE2 REMARK 620 2 HIS A 146 NE2 92.0 REMARK 620 3 GLU A 185 OE1 92.8 97.2 REMARK 620 4 TRS A 302 O2 172.5 93.7 91.3 REMARK 620 5 TRS A 302 N 94.9 172.2 85.9 79.1 REMARK 620 6 TRS A 302 O3 100.4 92.9 163.1 74.4 82.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 142 NE2 REMARK 620 2 HIS B 146 NE2 93.3 REMARK 620 3 GLU B 185 OE2 92.1 95.4 REMARK 620 4 TRS B 302 O2 170.4 90.5 96.3 REMARK 620 5 TRS B 302 N 96.8 168.2 90.3 78.6 REMARK 620 6 TRS B 302 O3 99.2 92.7 165.7 71.8 79.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS B 302 DBREF 6R53 A 24 220 UNP Q183R7 PPEP1_PEPD6 24 220 DBREF 6R53 B 24 220 UNP Q183R7 PPEP1_PEPD6 24 220 SEQADV 6R53 GLY A 23 UNP Q183R7 EXPRESSION TAG SEQADV 6R53 SER A 24 UNP Q183R7 ALA 24 CONFLICT SEQADV 6R53 MET A 26 UNP Q183R7 ALA 26 CONFLICT SEQADV 6R53 ARG A 101 UNP Q183R7 LYS 101 CONFLICT SEQADV 6R53 GLY B 23 UNP Q183R7 EXPRESSION TAG SEQADV 6R53 SER B 24 UNP Q183R7 ALA 24 CONFLICT SEQADV 6R53 MET B 26 UNP Q183R7 ALA 26 CONFLICT SEQADV 6R53 ARG B 101 UNP Q183R7 LYS 101 CONFLICT SEQRES 1 A 198 GLY SER HIS MET ASP SER THR THR ILE GLN GLN ASN LYS SEQRES 2 A 198 ASP THR LEU SER GLN ILE VAL VAL PHE PRO THR GLY ASN SEQRES 3 A 198 TYR ASP LYS ASN GLU ALA ASN ALA MET VAL ASN ARG LEU SEQRES 4 A 198 ALA ASN ILE ASP GLY LYS TYR LEU ASN ALA LEU LYS GLN SEQRES 5 A 198 ASN ASN LEU LYS ILE LYS LEU LEU SER GLY LYS LEU THR SEQRES 6 A 198 ASP GLU LYS GLU TYR ALA TYR LEU LYS GLY VAL VAL PRO SEQRES 7 A 198 ARG GLY TRP GLU GLY THR GLY LYS THR TRP ASP ASP VAL SEQRES 8 A 198 PRO GLY LEU GLY GLY SER THR VAL ALA LEU ARG ILE GLY SEQRES 9 A 198 PHE SER ASN LYS GLY LYS GLY HIS ASP ALA ILE ASN LEU SEQRES 10 A 198 GLU LEU HIS GLU THR ALA HIS ALA ILE ASP HIS ILE VAL SEQRES 11 A 198 LEU ASN ASP ILE SER LYS SER ALA GLN PHE LYS GLN ILE SEQRES 12 A 198 PHE ALA LYS GLU GLY ARG SER LEU GLY ASN VAL ASN TYR SEQRES 13 A 198 LEU GLY VAL TYR PRO GLU GLU PHE PHE ALA GLU SER PHE SEQRES 14 A 198 ALA TYR TYR TYR LEU ASN GLN ASP THR ASN SER LYS LEU SEQRES 15 A 198 LYS SER ALA CYS PRO GLN THR TYR SER PHE LEU GLN ASN SEQRES 16 A 198 LEU ALA LYS SEQRES 1 B 198 GLY SER HIS MET ASP SER THR THR ILE GLN GLN ASN LYS SEQRES 2 B 198 ASP THR LEU SER GLN ILE VAL VAL PHE PRO THR GLY ASN SEQRES 3 B 198 TYR ASP LYS ASN GLU ALA ASN ALA MET VAL ASN ARG LEU SEQRES 4 B 198 ALA ASN ILE ASP GLY LYS TYR LEU ASN ALA LEU LYS GLN SEQRES 5 B 198 ASN ASN LEU LYS ILE LYS LEU LEU SER GLY LYS LEU THR SEQRES 6 B 198 ASP GLU LYS GLU TYR ALA TYR LEU LYS GLY VAL VAL PRO SEQRES 7 B 198 ARG GLY TRP GLU GLY THR GLY LYS THR TRP ASP ASP VAL SEQRES 8 B 198 PRO GLY LEU GLY GLY SER THR VAL ALA LEU ARG ILE GLY SEQRES 9 B 198 PHE SER ASN LYS GLY LYS GLY HIS ASP ALA ILE ASN LEU SEQRES 10 B 198 GLU LEU HIS GLU THR ALA HIS ALA ILE ASP HIS ILE VAL SEQRES 11 B 198 LEU ASN ASP ILE SER LYS SER ALA GLN PHE LYS GLN ILE SEQRES 12 B 198 PHE ALA LYS GLU GLY ARG SER LEU GLY ASN VAL ASN TYR SEQRES 13 B 198 LEU GLY VAL TYR PRO GLU GLU PHE PHE ALA GLU SER PHE SEQRES 14 B 198 ALA TYR TYR TYR LEU ASN GLN ASP THR ASN SER LYS LEU SEQRES 15 B 198 LYS SER ALA CYS PRO GLN THR TYR SER PHE LEU GLN ASN SEQRES 16 B 198 LEU ALA LYS HET ZN A 301 1 HET TRS A 302 19 HET ZN B 301 1 HET TRS B 302 19 HETNAM ZN ZINC ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN TRS TRIS BUFFER FORMUL 3 ZN 2(ZN 2+) FORMUL 4 TRS 2(C4 H12 N O3 1+) FORMUL 7 HOH *462(H2 O) HELIX 1 AA1 ASP A 27 SER A 39 1 13 HELIX 2 AA2 ASP A 50 ALA A 62 1 13 HELIX 3 AA3 ASP A 65 ASN A 75 1 11 HELIX 4 AA4 LYS A 85 LYS A 96 5 12 HELIX 5 AA5 THR A 109 VAL A 113 5 5 HELIX 6 AA6 ASN A 138 VAL A 152 1 15 HELIX 7 AA7 ASP A 155 LYS A 158 5 4 HELIX 8 AA8 SER A 159 GLY A 170 1 12 HELIX 9 AA9 TYR A 182 ASN A 197 1 16 HELIX 10 AB1 ASN A 197 CYS A 208 1 12 HELIX 11 AB2 CYS A 208 ALA A 219 1 12 HELIX 12 AB3 MET B 26 GLN B 40 1 15 HELIX 13 AB4 ASP B 50 ALA B 62 1 13 HELIX 14 AB5 ASP B 65 ASN B 75 1 11 HELIX 15 AB6 LYS B 85 LYS B 96 5 12 HELIX 16 AB7 THR B 109 VAL B 113 5 5 HELIX 17 AB8 ASN B 138 VAL B 152 1 15 HELIX 18 AB9 ASP B 155 LYS B 158 5 4 HELIX 19 AC1 SER B 159 GLY B 170 1 12 HELIX 20 AC2 TYR B 182 ASN B 197 1 16 HELIX 21 AC3 ASN B 197 CYS B 208 1 12 HELIX 22 AC4 CYS B 208 ALA B 219 1 12 SHEET 1 AA1 4 VAL A 42 VAL A 43 0 SHEET 2 AA1 4 ILE A 79 LEU A 82 1 O ILE A 79 N VAL A 43 SHEET 3 AA1 4 VAL A 121 ARG A 124 1 O LEU A 123 N LEU A 82 SHEET 4 AA1 4 GLY A 115 GLY A 117 -1 N LEU A 116 O ALA A 122 SHEET 1 AA2 4 VAL B 42 VAL B 43 0 SHEET 2 AA2 4 ILE B 79 LEU B 82 1 O ILE B 79 N VAL B 43 SHEET 3 AA2 4 VAL B 121 ARG B 124 1 O LEU B 123 N LEU B 82 SHEET 4 AA2 4 GLY B 115 GLY B 117 -1 N LEU B 116 O ALA B 122 LINK NE2 HIS A 142 ZN ZN A 301 1555 1555 2.20 LINK NE2 HIS A 146 ZN ZN A 301 1555 1555 2.06 LINK OE1 GLU A 185 ZN ZN A 301 1555 1555 2.13 LINK ZN ZN A 301 O2 TRS A 302 1555 1555 2.08 LINK ZN ZN A 301 N TRS A 302 1555 1555 2.14 LINK ZN ZN A 301 O3 TRS A 302 1555 1555 2.12 LINK NE2 HIS B 142 ZN ZN B 301 1555 1555 2.16 LINK NE2 HIS B 146 ZN ZN B 301 1555 1555 2.10 LINK OE2 GLU B 185 ZN ZN B 301 1555 1555 2.13 LINK ZN ZN B 301 O2 TRS B 302 1555 1555 2.17 LINK ZN ZN B 301 N TRS B 302 1555 1555 2.22 LINK ZN ZN B 301 O3 TRS B 302 1555 1555 2.18 SITE 1 AC1 4 HIS A 142 HIS A 146 GLU A 185 TRS A 302 SITE 1 AC2 10 HIS A 142 GLU A 143 HIS A 146 TYR A 178 SITE 2 AC2 10 GLU A 185 ZN A 301 HOH A 475 HOH A 505 SITE 3 AC2 10 HOH A 548 HIS B 25 SITE 1 AC3 4 HIS B 142 HIS B 146 GLU B 185 TRS B 302 SITE 1 AC4 10 HIS B 142 GLU B 143 HIS B 146 TYR B 178 SITE 2 AC4 10 GLU B 185 ZN B 301 HOH B 484 HOH B 518 SITE 3 AC4 10 HOH B 546 HOH B 568 CRYST1 43.150 71.830 117.860 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023175 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013922 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008485 0.00000