HEADER LYASE 26-MAR-19 6R62 TITLE CRYSTAL STRUCTURE OF A CLASS II PYRUVATE ALDOLASE FROM SPHINGOMONAS TITLE 2 WITTICHII RW1 IN COMPLEX WITH HYDROXYPYRUVATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HPCH/HPAI ALDOLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: THE FIRST TWO HISTIDINE RESIDUES ARE FROM THE HIS-TAG SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPHINGOMONAS WITTICHII RW1; SOURCE 3 ORGANISM_TAXID: 392499; SOURCE 4 GENE: SWIT_5035; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CLASS II PYRUVATE ALDOLASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR S.R.MARSDEN,L.MESTROM,P.L.HAGEDOORN,I.BENTO,D.G.G.MCMILLAN,U.HANEFELD REVDAT 1 29-MAY-19 6R62 0 JRNL AUTH S.R.MARSDEN,L.MESTROM,I.BENTO,P.L.HAGEDOORN,D.G.G.MCMILLAN, JRNL AUTH 2 U.HANEFELD JRNL TITL CH-PI INTERACTIONS PROMOTE THE CONVERSION OF HYDROXYPYRUVATE JRNL TITL 2 IN A CLASS II PYRUVATE ALDOLASE JRNL REF ADV.SYNTH.CATAL. 2019 JRNL REFN ESSN 1615-4169 JRNL DOI 10.1002/ADSC.201900205 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 67.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 38726 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.810 REMARK 3 FREE R VALUE TEST SET COUNT : 1861 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 67.3646 - 3.6450 0.99 3153 162 0.1499 0.1722 REMARK 3 2 3.6450 - 2.8931 0.98 2952 129 0.1397 0.1331 REMARK 3 3 2.8931 - 2.5274 0.98 2880 161 0.1446 0.1770 REMARK 3 4 2.5274 - 2.2963 0.98 2860 139 0.1426 0.1763 REMARK 3 5 2.2963 - 2.1317 0.93 2721 131 0.1942 0.2026 REMARK 3 6 2.1317 - 2.0060 0.97 2792 133 0.1744 0.2074 REMARK 3 7 2.0060 - 1.9055 0.91 2618 151 0.2517 0.2751 REMARK 3 8 1.9055 - 1.8226 0.91 2601 143 0.2369 0.2416 REMARK 3 9 1.8226 - 1.7524 1.00 2867 141 0.1774 0.1808 REMARK 3 10 1.7524 - 1.6919 1.00 2867 137 0.1913 0.2299 REMARK 3 11 1.6919 - 1.6390 1.00 2858 140 0.1883 0.2059 REMARK 3 12 1.6390 - 1.5922 1.00 2834 157 0.1925 0.2793 REMARK 3 13 1.5922 - 1.5503 0.99 2862 137 0.2014 0.2332 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.96 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1974 REMARK 3 ANGLE : 0.836 2689 REMARK 3 CHIRALITY : 0.053 304 REMARK 3 PLANARITY : 0.007 362 REMARK 3 DIHEDRAL : 10.772 1188 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 232 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.1514 26.2508 26.4244 REMARK 3 T TENSOR REMARK 3 T11: 0.1481 T22: 0.1533 REMARK 3 T33: 0.2453 T12: -0.0486 REMARK 3 T13: -0.0316 T23: -0.0157 REMARK 3 L TENSOR REMARK 3 L11: 0.7299 L22: 0.7662 REMARK 3 L33: 0.6862 L12: -0.0511 REMARK 3 L13: 0.2518 L23: -0.1368 REMARK 3 S TENSOR REMARK 3 S11: 0.0361 S12: -0.0182 S13: 0.0673 REMARK 3 S21: -0.0298 S22: 0.0202 S23: 0.2323 REMARK 3 S31: 0.0743 S32: -0.1000 S33: -0.0504 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 233 THROUGH 251 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.5320 54.0595 24.2971 REMARK 3 T TENSOR REMARK 3 T11: 0.2154 T22: 0.1727 REMARK 3 T33: 0.3630 T12: -0.0244 REMARK 3 T13: -0.0913 T23: -0.0217 REMARK 3 L TENSOR REMARK 3 L11: 1.0612 L22: 5.4204 REMARK 3 L33: 0.8857 L12: 1.5919 REMARK 3 L13: -0.1391 L23: 0.0315 REMARK 3 S TENSOR REMARK 3 S11: -0.1087 S12: 0.1131 S13: 0.3391 REMARK 3 S21: -0.2140 S22: 0.0630 S23: 0.3557 REMARK 3 S31: -0.2120 S32: -0.0109 S33: 0.0280 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6R62 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1292101421. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : FMB-OXFORD DCM REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.3 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39857 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 116.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 36.40 REMARK 200 R MERGE (I) : 0.12200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 38.50 REMARK 200 R MERGE FOR SHELL (I) : 1.51100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CITRATE, HEPES, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 14555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 16555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 17555 X+1/2,Z+1/2,-Y+1/2 REMARK 290 18555 -X+1/2,Z+1/2,Y+1/2 REMARK 290 19555 -X+1/2,-Z+1/2,-Y+1/2 REMARK 290 20555 X+1/2,-Z+1/2,Y+1/2 REMARK 290 21555 Z+1/2,Y+1/2,-X+1/2 REMARK 290 22555 Z+1/2,-Y+1/2,X+1/2 REMARK 290 23555 -Z+1/2,Y+1/2,X+1/2 REMARK 290 24555 -Z+1/2,-Y+1/2,-X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 58.28450 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 58.28450 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 58.28450 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 58.28450 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 58.28450 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 58.28450 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 58.28450 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 58.28450 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 58.28450 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 58.28450 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 58.28450 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 58.28450 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 58.28450 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 58.28450 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 58.28450 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 58.28450 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 58.28450 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 58.28450 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 58.28450 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 58.28450 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 58.28450 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 58.28450 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 58.28450 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 58.28450 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 58.28450 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 58.28450 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 58.28450 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 58.28450 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 58.28450 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 58.28450 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 58.28450 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 58.28450 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 58.28450 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 58.28450 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 58.28450 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 58.28450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 31270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -191.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 58.28450 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 58.28450 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 58.28450 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 58.28450 REMARK 350 BIOMT2 5 0.000000 0.000000 -1.000000 58.28450 REMARK 350 BIOMT3 5 0.000000 -1.000000 0.000000 58.28450 REMARK 350 BIOMT1 6 0.000000 0.000000 -1.000000 58.28450 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 58.28450 REMARK 350 BIOMT3 6 -1.000000 0.000000 0.000000 58.28450 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NA NA A 309 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 637 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 698 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 700 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 709 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 721 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 724 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 742 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 750 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 752 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 782 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 44 66.50 -110.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 746 DISTANCE = 5.86 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 307 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 31 O REMARK 620 2 LEU A 33 O 78.1 REMARK 620 3 TYR A 35 O 105.6 85.7 REMARK 620 4 GLY A 63 O 89.3 167.2 100.2 REMARK 620 5 HOH A 599 O 81.0 103.6 169.7 71.7 REMARK 620 6 HOH A 646 O 174.4 99.6 79.1 92.8 94.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 304 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 145 OE1 REMARK 620 2 ASP A 171 OD2 95.2 REMARK 620 3 3PY A 301 O1 83.0 93.4 REMARK 620 4 3PY A 301 O3 93.1 164.8 75.1 REMARK 620 5 HOH A 450 O 85.9 99.6 163.6 93.5 REMARK 620 6 HOH A 481 O 176.5 84.0 100.4 88.4 90.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 308 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 158 O REMARK 620 2 ASP A 160 OD1 85.8 REMARK 620 3 ASP A 160 OD2 103.0 39.5 REMARK 620 4 HOH A 411 O 133.1 51.4 57.8 REMARK 620 5 LEU A 150 O 33.5 113.3 136.4 142.8 REMARK 620 6 ALA A 151 O 40.2 123.9 140.2 152.4 11.9 REMARK 620 7 HOH A 506 O 94.2 163.4 154.4 121.3 62.3 54.0 REMARK 620 8 HOH A 554 O 89.8 90.0 124.8 74.3 72.0 78.7 73.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 309 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 438 O REMARK 620 2 HOH A 523 O 85.0 REMARK 620 3 HOH A 438 O 96.3 174.6 REMARK 620 4 HOH A 523 O 174.6 89.8 88.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3PY A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3PY A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 309 DBREF 6R62 A 2 251 UNP A5VH82 A5VH82_SPHWW 2 251 SEQADV 6R62 HIS A 0 UNP A5VH82 EXPRESSION TAG SEQADV 6R62 HIS A 1 UNP A5VH82 EXPRESSION TAG SEQRES 1 A 252 HIS HIS ASN LYS VAL ARG THR CYS TRP ASN GLU GLY ARG SEQRES 2 A 252 PRO ALA LEU ALA GLY TRP LEU GLN LEU PRO GLY THR LEU SEQRES 3 A 252 HIS ALA GLU ALA LEU ALA ARG LEU ASP TYR ASP ALA VAL SEQRES 4 A 252 VAL ILE ASP MET GLN HIS SER PRO ILE ASP PHE GLY GLN SEQRES 5 A 252 VAL ALA PRO MET LEU ILE ALA ILE GLU LEU GLY GLY ALA SEQRES 6 A 252 GLU PRO PHE VAL ARG THR GLN VAL ASN ASP PRO SER ASP SEQRES 7 A 252 ILE MET LYS LEU LEU ASP ALA GLY ALA TYR GLY ILE ILE SEQRES 8 A 252 ALA PRO MET VAL ASN THR ARG ALA GLU ALA GLN THR LEU SEQRES 9 A 252 ALA SER ALA LEU HIS TYR SER PRO ARG GLY LEU ARG SER SEQRES 10 A 252 PHE GLY PRO ARG ARG PRO SER LEU ARG TYR GLY SER GLY SEQRES 11 A 252 TYR LEU ALA GLN ALA SER GLU THR VAL VAL GLY LEU ALA SEQRES 12 A 252 MET ILE GLU THR ARG GLU ALA LEU ALA ASN ILE ASP GLU SEQRES 13 A 252 ILE LEU SER VAL ASP GLY ILE ASP GLY VAL PHE ILE GLY SEQRES 14 A 252 PRO THR ASP LEU ALA LEU ASP LEU GLY HIS ALA PRO LEU SEQRES 15 A 252 VAL ASP THR GLU GLU ALA GLU VAL VAL SER ALA ILE ALA SEQRES 16 A 252 HIS VAL ARG GLU ARG ALA HIS ALA ALA GLY LYS ARG VAL SEQRES 17 A 252 GLY ILE PHE CYS GLY SER GLY GLY PHE ALA ARG VAL LYS SEQRES 18 A 252 LEU ALA GLU GLY PHE ASP PHE VAL THR ALA ALA PRO ASP SEQRES 19 A 252 LEU ALA MET LEU SER ALA ALA ALA ARG GLN VAL ILE ALA SEQRES 20 A 252 ASP ALA ARG ALA LEU HET 3PY A 301 10 HET 3PY A 302 7 HET ACT A 303 7 HET MG A 304 1 HET BR A 305 1 HET BR A 306 1 HET K A 307 1 HET K A 308 1 HET NA A 309 1 HETNAM 3PY 3-HYDROXYPYRUVIC ACID HETNAM ACT ACETATE ION HETNAM MG MAGNESIUM ION HETNAM BR BROMIDE ION HETNAM K POTASSIUM ION HETNAM NA SODIUM ION FORMUL 2 3PY 2(C3 H4 O4) FORMUL 4 ACT C2 H3 O2 1- FORMUL 5 MG MG 2+ FORMUL 6 BR 2(BR 1-) FORMUL 8 K 2(K 1+) FORMUL 10 NA NA 1+ FORMUL 11 HOH *365(H2 O) HELIX 1 AA1 ASN A 2 GLU A 10 1 9 HELIX 2 AA2 THR A 24 ARG A 32 1 9 HELIX 3 AA3 ASP A 48 GLY A 63 1 16 HELIX 4 AA4 ASP A 74 ALA A 84 1 11 HELIX 5 AA5 THR A 96 LEU A 107 1 12 HELIX 6 AA6 PRO A 119 GLY A 127 1 9 HELIX 7 AA7 GLY A 129 VAL A 138 1 10 HELIX 8 AA8 THR A 146 ASN A 152 1 7 HELIX 9 AA9 ASN A 152 SER A 158 1 7 HELIX 10 AB1 GLY A 168 LEU A 176 1 9 HELIX 11 AB2 GLU A 186 ALA A 203 1 18 HELIX 12 AB3 SER A 213 GLY A 224 1 12 HELIX 13 AB4 ASP A 233 ALA A 250 1 18 SHEET 1 AA1 9 ALA A 14 LEU A 19 0 SHEET 2 AA1 9 ALA A 37 ASP A 41 1 O ASP A 41 N LEU A 19 SHEET 3 AA1 9 GLU A 65 ARG A 69 1 O PHE A 67 N VAL A 38 SHEET 4 AA1 9 GLY A 88 ALA A 91 1 O ILE A 90 N VAL A 68 SHEET 5 AA1 9 VAL A 139 ILE A 144 1 O VAL A 139 N ILE A 89 SHEET 6 AA1 9 GLY A 164 ILE A 167 1 O PHE A 166 N ALA A 142 SHEET 7 AA1 9 ARG A 206 PHE A 210 1 O GLY A 208 N ILE A 167 SHEET 8 AA1 9 PHE A 227 PRO A 232 1 O PHE A 227 N ILE A 209 SHEET 9 AA1 9 ALA A 14 LEU A 19 1 N ALA A 16 O VAL A 228 LINK O ALA A 31 K K A 307 1555 1555 2.58 LINK O LEU A 33 K K A 307 1555 1555 2.63 LINK O TYR A 35 K K A 307 1555 1555 2.79 LINK O GLY A 63 K K A 307 1555 1555 2.82 LINK OE1 GLU A 145 MG MG A 304 1555 1555 1.96 LINK O SER A 158 K K A 308 1555 1555 2.61 LINK OD1 ASP A 160 K K A 308 1555 1555 2.93 LINK OD2 ASP A 160 K K A 308 1555 1555 3.42 LINK OD2 ASP A 171 MG MG A 304 1555 1555 2.05 LINK O1 3PY A 301 MG MG A 304 1555 1555 2.17 LINK O3 3PY A 301 MG MG A 304 1555 1555 2.13 LINK MG MG A 304 O HOH A 450 1555 1555 2.11 LINK MG MG A 304 O HOH A 481 1555 1555 2.11 LINK K K A 307 O HOH A 599 1555 1555 3.02 LINK K K A 307 O HOH A 646 1555 1555 2.65 LINK K K A 308 O HOH A 411 1555 1555 3.09 LINK NA NA A 309 O HOH A 438 1555 1555 2.64 LINK NA NA A 309 O HOH A 523 1555 1555 2.36 LINK O LEU A 150 K K A 308 1555 10555 2.82 LINK O ALA A 151 K K A 308 1555 10555 3.04 LINK K K A 308 O HOH A 506 1555 7555 2.80 LINK K K A 308 O HOH A 554 1555 7555 2.94 LINK NA NA A 309 O HOH A 438 1555 9555 2.64 LINK NA NA A 309 O HOH A 523 1555 5555 2.36 CISPEP 1 SER A 110 PRO A 111 0 9.42 CISPEP 2 ALA A 230 ALA A 231 0 -13.95 SITE 1 AC1 13 ARG A 69 MET A 143 GLU A 145 ILE A 167 SITE 2 AC1 13 GLY A 168 PRO A 169 THR A 170 ASP A 171 SITE 3 AC1 13 PHE A 210 MG A 304 HOH A 450 HOH A 481 SITE 4 AC1 13 HOH A 552 SITE 1 AC2 7 PHE A 117 SER A 123 SER A 128 TYR A 130 SITE 2 AC2 7 LEU A 131 HOH A 406 HOH A 521 SITE 1 AC3 7 ARG A 97 GLN A 101 ALA A 151 VAL A 159 SITE 2 AC3 7 ASP A 160 HOH A 401 HOH A 794 SITE 1 AC4 6 SER A 116 GLU A 145 ASP A 171 3PY A 301 SITE 2 AC4 6 HOH A 450 HOH A 481 SITE 1 AC5 4 ASP A 34 ARG A 242 HOH A 540 HOH A 648 SITE 1 AC6 6 ALA A 31 LEU A 33 TYR A 35 GLY A 63 SITE 2 AC6 6 HOH A 599 HOH A 646 SITE 1 AC7 7 LEU A 150 ALA A 151 SER A 158 ASP A 160 SITE 2 AC7 7 HOH A 411 HOH A 506 HOH A 554 SITE 1 AC8 2 HOH A 438 HOH A 523 CRYST1 116.569 116.569 116.569 90.00 90.00 90.00 P 42 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008579 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008579 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008579 0.00000