HEADER HYDROLASE 26-MAR-19 6R6A TITLE MAJOR ASPARTYL PEPTIDASE 1 FROM C. NEOFORMANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDOPEPTIDASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PEPSTATIN; COMPND 7 CHAIN: D SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRYPTOCOCCUS NEOFORMANS VAR. GRUBII; SOURCE 3 ORGANISM_TAXID: 178876; SOURCE 4 GENE: CNAG_05872; SOURCE 5 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7227; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: ACTINOMYCES; SOURCE 9 ORGANISM_TAXID: 1654 KEYWDS ASPARTYL PROTEASE, SECRETED, CRYPTOCOCCUS NEOFORMANS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.KRYSTUFEK,P.SACHA,J.BRYNDA,J.KONVALINKA REVDAT 3 24-JAN-24 6R6A 1 REMARK REVDAT 2 09-JUN-21 6R6A 1 JRNL REVDAT 1 07-APR-21 6R6A 0 JRNL AUTH R.KRYSTUFEK,P.SACHA,J.STARKOVA,J.BRYNDA,M.HRADILEK, JRNL AUTH 2 E.TLOUST'OVA,J.GRZYMSKA,W.RUT,M.J.BOUCHER,M.DRAG,P.MAJER, JRNL AUTH 3 M.HAJEK,P.REZACOVA,H.D.MADHANI,C.S.CRAIK,J.KONVALINKA JRNL TITL RE-EMERGING ASPARTIC PROTEASE TARGETS: EXAMINING JRNL TITL 2 CRYPTOCOCCUS NEOFORMANS MAJOR ASPARTYL PEPTIDASE 1 AS A JRNL TITL 3 TARGET FOR ANTIFUNGAL DRUG DISCOVERY. JRNL REF J.MED.CHEM. V. 64 6706 2021 JRNL REFN ISSN 0022-2623 JRNL PMID 34006103 JRNL DOI 10.1021/ACS.JMEDCHEM.0C02177 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 73.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 84.3 REMARK 3 NUMBER OF REFLECTIONS : 37608 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2594 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 119 REMARK 3 SOLVENT ATOMS : 203 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.37 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.75000 REMARK 3 B22 (A**2) : 0.98000 REMARK 3 B33 (A**2) : -0.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.117 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.113 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.084 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6R6A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1292101490. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 - 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-X REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54187 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 300K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39317 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 73.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 84.3 REMARK 200 DATA REDUNDANCY : 3.529 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 29.8 REMARK 200 DATA REDUNDANCY IN SHELL : 1.25 REMARK 200 R MERGE FOR SHELL (I) : 0.56500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.990 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 6R61 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (83 MG/ML) IN 50 MM SODIUM REMARK 280 ACETATE, PH 5.0, 100 MM SODIUM CHLORIDE WITH RESERVOIR SOLUTION REMARK 280 COMPOSED OF 200 MM LITHIUM SULFATE, 45% (V/V) PEG-400, 100 MM REMARK 280 SODIUM ACETATE PH 4.5., VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.51550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.51550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 48.68000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.32050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 48.68000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.32050 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 45.51550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 48.68000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 56.32050 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 45.51550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 48.68000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 56.32050 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 563 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 693 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 226 REMARK 465 SER A 227 REMARK 465 SER A 228 REMARK 465 GLY A 229 REMARK 465 GLY A 230 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 249 CG CD OE1 NE2 REMARK 470 ARG A 307 NE CZ NH1 NH2 REMARK 470 VAL A 356 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 542 O HOH A 542 3555 1.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA D 404 CA - C - N ANGL. DEV. = 18.1 DEGREES REMARK 500 ALA D 404 O - C - N ANGL. DEV. = -15.1 DEGREES REMARK 500 STA D 405 C - N - CA ANGL. DEV. = 36.4 DEGREES REMARK 500 STA D 405 C - N - CA ANGL. DEV. = 23.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 122 133.30 -38.04 REMARK 500 ASP A 206 -93.35 -138.48 REMARK 500 LEU A 243 -153.13 -109.51 REMARK 500 ALA A 266 -51.08 114.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 STA D 403 ALA D 404 -122.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 STA D 403 29.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 1PE A 414 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6R5H RELATED DB: PDB REMARK 900 RELATED ID: 6R61 RELATED DB: PDB DBREF 6R6A A 7 356 UNP J9VS02 J9VS02_CRYNH 86 435 DBREF 6R6A D 400 405 PDB 6R6A 6R6A 400 405 SEQADV 6R6A LYS A 183 UNP J9VS02 PHE 262 CONFLICT SEQRES 1 A 350 ALA THR GLY THR VAL SER LEU THR ASP VAL GLY LEU ASP SEQRES 2 A 350 ALA SER TYR ALA GLY GLN VAL SER ILE GLY THR PRO ALA SEQRES 3 A 350 GLN ASP PHE LEU VAL ILE MET ASP SER GLY SER SER ASP SEQRES 4 A 350 LEU TRP VAL ALA GLY SER THR CYS THR GLU ASN PHE CYS SEQRES 5 A 350 LYS GLN THR TYR THR PHE ASP THR SER THR SER SER SER SEQRES 6 A 350 PHE ILE THR SER SER GLU ALA PHE ASN ILE THR TYR GLY SEQRES 7 A 350 SER GLY ASP ALA ASP GLY THR LEU GLY THR ASP THR VAL SEQRES 8 A 350 SER MET ALA GLY PHE THR VAL SER ASP GLN THR PHE GLY SEQRES 9 A 350 VAL VAL THR SER THR SER ALA ASN LEU ILE SER TYR PRO SEQRES 10 A 350 LEU SER GLY LEU MET GLY LEU ALA TRP LYS SER ILE ALA SEQRES 11 A 350 SER SER GLY ALA THR PRO PHE TRP GLN THR LEU ALA ALA SEQRES 12 A 350 SER GLY ASP TRP ASP SER PRO GLU MET GLY VAL TYR LEU SEQRES 13 A 350 LYS ARG TYR ARG GLY ASP ASN THR ALA SER GLN ILE GLU SEQRES 14 A 350 THR ASP GLY GLY GLN ILE LEU LYS GLY GLY LEU ASN THR SEQRES 15 A 350 SER LEU TYR ASN GLY SER VAL ASN TYR ILE SER ILE ASP SEQRES 16 A 350 GLU SER GLU LYS ASP TYR TRP ARG ILE PRO LEU GLU ALA SEQRES 17 A 350 MET VAL ILE GLN GLY ASN SER VAL SER ILE ALA SER SER SEQRES 18 A 350 SER GLY GLY SER ASN PRO SER CYS ALA ILE ASP THR GLY SEQRES 19 A 350 THR THR LEU ILE GLY VAL PRO SER GLN THR ALA ASN ARG SEQRES 20 A 350 ILE TYR SER GLN ILE ALA GLY ALA GLU ALA LEU SER ALA SEQRES 21 A 350 SER SER GLY TYR GLU GLY TYR TYR GLN TYR PRO CYS ASP SEQRES 22 A 350 THR GLU VAL THR VAL SER LEU GLN PHE GLY GLY MET SER SEQRES 23 A 350 TYR SER ILE SER ASN ALA ASP MET ASN LEU GLY SER PHE SEQRES 24 A 350 THR ARG ASP THR SER MET CYS THR GLY ALA PHE PHE ALA SEQRES 25 A 350 MET ASP MET SER SER ARG SER PRO VAL GLN TRP ILE VAL SEQRES 26 A 350 GLY ALA SER PHE ILE LYS ASN VAL TYR THR ALA PHE ARG SEQRES 27 A 350 TYR ASN PRO ALA ALA ILE GLY PHE ALA GLU LEU VAL SEQRES 1 D 6 IVA VAL VAL STA ALA STA HET IVA D 400 6 HET STA D 403 11 HET STA D 405 24 HET NAG B 1 14 HET NAG B 2 14 HET PGE A 403 10 HET PEG A 404 7 HET PEG A 405 7 HET PEG A 406 7 HET SO4 A 407 5 HET SO4 A 408 5 HET SO4 A 409 5 HET SO4 A 410 5 HET SO4 A 411 5 HET SO4 A 412 5 HET NA A 413 1 HET 1PE A 414 13 HET 1PE A 415 16 HETNAM IVA ISOVALERIC ACID HETNAM STA STATINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM PGE TRIETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM SO4 SULFATE ION HETNAM NA SODIUM ION HETNAM 1PE PENTAETHYLENE GLYCOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN 1PE PEG400 FORMUL 2 IVA C5 H10 O2 FORMUL 2 STA 2(C8 H17 N O3) FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 4 PGE C6 H14 O4 FORMUL 5 PEG 3(C4 H10 O3) FORMUL 8 SO4 6(O4 S 2-) FORMUL 14 NA NA 1+ FORMUL 15 1PE 2(C10 H22 O6) FORMUL 17 HOH *203(H2 O) HELIX 1 AA1 GLU A 55 GLN A 60 1 6 HELIX 2 AA2 ASP A 65 SER A 69 5 5 HELIX 3 AA3 TRP A 132 ALA A 136 5 5 HELIX 4 AA4 PRO A 142 GLY A 151 1 10 HELIX 5 AA5 PRO A 247 GLN A 257 1 11 HELIX 6 AA6 SER A 296 ASN A 301 1 6 HELIX 7 AA7 GLY A 332 LYS A 337 1 6 SHEET 1 AA1 6 GLY A 9 SER A 12 0 SHEET 2 AA1 6 GLY A 179 LYS A 183 -1 O LYS A 183 N GLY A 9 SHEET 3 AA1 6 GLU A 157 LEU A 162 -1 N GLY A 159 O LEU A 182 SHEET 4 AA1 6 TYR A 340 ARG A 344 -1 O THR A 341 N VAL A 160 SHEET 5 AA1 6 ALA A 349 LEU A 355 -1 O GLY A 351 N ALA A 342 SHEET 6 AA1 6 TYR A 191 SER A 199 -1 N ILE A 198 O ILE A 350 SHEET 1 AA2 5 ILE A 73 TYR A 83 0 SHEET 2 AA2 5 GLY A 86 MET A 99 -1 O THR A 94 N ILE A 73 SHEET 3 AA2 5 SER A 21 ILE A 28 -1 N SER A 27 O SER A 98 SHEET 4 AA2 5 THR A 14 VAL A 16 -1 N VAL A 16 O SER A 21 SHEET 5 AA2 5 ILE A 174 GLU A 175 -1 O GLU A 175 N ASP A 15 SHEET 1 AA3 9 ILE A 73 TYR A 83 0 SHEET 2 AA3 9 GLY A 86 MET A 99 -1 O THR A 94 N ILE A 73 SHEET 3 AA3 9 PHE A 102 THR A 115 -1 O VAL A 111 N THR A 91 SHEET 4 AA3 9 LEU A 46 ALA A 49 1 N VAL A 48 O VAL A 112 SHEET 5 AA3 9 GLY A 126 GLY A 129 -1 O LEU A 127 N TRP A 47 SHEET 6 AA3 9 GLN A 33 ASP A 40 1 N ILE A 38 O MET A 128 SHEET 7 AA3 9 SER A 21 ILE A 28 -1 N ILE A 28 O GLN A 33 SHEET 8 AA3 9 THR A 14 VAL A 16 -1 N VAL A 16 O SER A 21 SHEET 9 AA3 9 ILE A 174 GLU A 175 -1 O GLU A 175 N ASP A 15 SHEET 1 AA4 5 ARG A 209 PRO A 211 0 SHEET 2 AA4 5 SER A 234 ILE A 237 -1 O CYS A 235 N ILE A 210 SHEET 3 AA4 5 TRP A 329 VAL A 331 1 O VAL A 331 N ALA A 236 SHEET 4 AA4 5 ILE A 244 VAL A 246 -1 N GLY A 245 O ILE A 330 SHEET 5 AA4 5 PHE A 316 ALA A 318 1 O PHE A 317 N VAL A 246 SHEET 1 AA5 4 ASN A 220 SER A 221 0 SHEET 2 AA5 4 ALA A 214 ILE A 217 -1 N ILE A 217 O ASN A 220 SHEET 3 AA5 4 VAL A 284 PHE A 288 -1 O GLN A 287 N ALA A 214 SHEET 4 AA5 4 MET A 291 ILE A 295 -1 O ILE A 295 N VAL A 284 SHEET 1 AA6 3 GLU A 262 ALA A 263 0 SHEET 2 AA6 3 TYR A 274 PRO A 277 -1 O GLN A 275 N GLU A 262 SHEET 3 AA6 3 MET A 311 THR A 313 -1 O CYS A 312 N TYR A 276 SSBOND 1 CYS A 53 CYS A 58 1555 1555 2.09 SSBOND 2 CYS A 278 CYS A 312 1555 1555 2.08 LINK ND2 ASN A 187 C1 NAG B 1 1555 1555 1.45 LINK C IVA D 400 N VAL D 401 1555 1555 1.38 LINK C VAL D 402 N STA D 403 1555 1555 1.31 LINK C STA D 403 N ALA D 404 1555 1555 1.30 LINK C ALA D 404 N ASTA D 405 1555 1555 1.29 LINK C ALA D 404 N BSTA D 405 1555 1555 1.29 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.45 LINK NA NA A 413 OH4 1PE A 414 1555 1555 3.09 CISPEP 1 THR A 30 PRO A 31 0 -6.73 CISPEP 2 TYR A 122 PRO A 123 0 5.93 CISPEP 3 ASN A 346 PRO A 347 0 -10.46 CRYST1 97.360 112.641 91.031 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010271 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008878 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010985 0.00000