HEADER PLANT PROTEIN 02-APR-19 6R8M TITLE COMPLEX OF RICE BLAST (MAGNAPORTHE ORYZAE) EFFECTOR PROTEIN AVR-PIKE TITLE 2 WITH AN ENGINEERED HMA DOMAIN OF PIKP-1 FROM RICE (ORYZA SATIVA) COMPND MOL_ID: 1; COMPND 2 MOLECULE: NBS-LRR CLASS DISEASE RESISTANCE PROTEIN PIKH-1; COMPND 3 CHAIN: A, B, E, F; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: AVR-PIK PROTEIN; COMPND 7 CHAIN: C, G; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYZA SATIVA; SOURCE 3 ORGANISM_COMMON: RICE; SOURCE 4 ORGANISM_TAXID: 4530; SOURCE 5 GENE: PI-KM1, PIKH-1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MAGNAPORTHE ORYZAE; SOURCE 10 ORGANISM_TAXID: 318829; SOURCE 11 GENE: AVR-PIK; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NLR, COMPLEX, HMA, RICE BLAST, PLANT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.C.DE LA CONCEPCION,M.FRANCESCHETTI,M.J.BANFIELD REVDAT 5 24-JAN-24 6R8M 1 JRNL REVDAT 4 02-OCT-19 6R8M 1 JRNL REVDAT 3 18-SEP-19 6R8M 1 REMARK REVDAT 2 10-JUL-19 6R8M 1 REMARK REVDAT 1 24-APR-19 6R8M 0 JRNL AUTH J.C.DE LA CONCEPCION,M.FRANCESCHETTI,D.MACLEAN,R.TERAUCHI, JRNL AUTH 2 S.KAMOUN,M.J.BANFIELD JRNL TITL PROTEIN ENGINEERING EXPANDS THE EFFECTOR RECOGNITION PROFILE JRNL TITL 2 OF A RICE NLR IMMUNE RECEPTOR. JRNL REF ELIFE V. 8 2019 JRNL REFN ESSN 2050-084X JRNL PMID 31535976 JRNL DOI 10.7554/ELIFE.47713 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.C.DE LA CONCEPCION,M.FRANCESCHETTI,R.TERAUCHI,S.KAMOUN, REMARK 1 AUTH 2 M.J.BANFIELD REMARK 1 TITL PROTEIN ENGINEERING EXPANDS THE EFFECTOR RECOGNITION PROFILE REMARK 1 TITL 2 OF A RICE NLR IMMUNE RECEPTOR REMARK 1 REF BIORXIV 2019 REMARK 1 REFN ISSN 2692-8205 REMARK 1 DOI 10.1101/611152 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0232 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 46754 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2518 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3374 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.55 REMARK 3 BIN R VALUE (WORKING SET) : 0.2910 REMARK 3 BIN FREE R VALUE SET COUNT : 172 REMARK 3 BIN FREE R VALUE : 0.3500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3546 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 294 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.90000 REMARK 3 B22 (A**2) : 4.10000 REMARK 3 B33 (A**2) : -2.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.125 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.125 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.102 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.545 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3684 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3680 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4974 ; 1.558 ; 1.634 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8553 ; 1.316 ; 1.594 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 482 ; 7.102 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 164 ;31.764 ;22.561 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 692 ;15.116 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;18.710 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 473 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4064 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 709 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6R8M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-APR-19. REMARK 100 THE DEPOSITION ID IS D_1292101575. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49337 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 29.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 18.30 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 17.80 REMARK 200 R MERGE FOR SHELL (I) : 0.75100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.6.1 REMARK 200 STARTING MODEL: 6G10 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MORPHEUS HT-96 CONDITION A8 [0.06M REMARK 280 DIVALENTS (0.3M MAGNESIUM CHLORIDE HEXAHYDRATE; 0.3M CALCIUM REMARK 280 CHLORIDE DIHYDRATE); 0.1M BUFFER SYSTEM 2 (SODIUM HEPES; MOPS REMARK 280 (ACID)) PH 7.5; 37.5%V/V PRECIPITANT MIX 4 (25%V/V MPD; 25%V/V REMARK 280 PEG 1000; 25%V/V PEG3350), VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.22800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.78850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.35050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.78850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.22800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.35050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 184 REMARK 465 ASN A 200 REMARK 465 ASN A 201 REMARK 465 LYS A 261 REMARK 465 GLU A 262 REMARK 465 ASP A 263 REMARK 465 ASN B 200 REMARK 465 ASN B 201 REMARK 465 GLU C 22 REMARK 465 THR C 23 REMARK 465 GLY C 24 REMARK 465 ASN C 25 REMARK 465 LYS C 26 REMARK 465 TYR C 27 REMARK 465 ILE C 28 REMARK 465 GLU C 29 REMARK 465 LYS C 30 REMARK 465 ARG C 31 REMARK 465 GLY E 184 REMARK 465 PRO E 185 REMARK 465 GLY E 186 REMARK 465 ALA E 260 REMARK 465 LYS E 261 REMARK 465 GLU E 262 REMARK 465 ASP E 263 REMARK 465 ASN F 200 REMARK 465 ASN F 201 REMARK 465 ASP F 263 REMARK 465 GLU G 22 REMARK 465 THR G 23 REMARK 465 GLY G 24 REMARK 465 ASN G 25 REMARK 465 LYS G 26 REMARK 465 TYR G 27 REMARK 465 ILE G 28 REMARK 465 GLU G 29 REMARK 465 LYS G 30 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 325 O HOH C 327 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 196 -71.46 -55.13 REMARK 500 MET A 197 101.91 62.39 REMARK 500 GLU A 198 64.21 -157.43 REMARK 500 GLU B 198 -142.24 -164.69 REMARK 500 VAL B 249 -58.33 -139.19 REMARK 500 TRP C 74 -159.06 -151.33 REMARK 500 LYS E 188 67.46 71.05 REMARK 500 ALA E 196 98.23 -66.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER E 258 GLN E 259 148.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD G 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL G 202 DBREF 6R8M A 186 263 UNP D5L9G5 D5L9G5_ORYSJ 186 263 DBREF 6R8M B 186 263 UNP D5L9G5 D5L9G5_ORYSJ 186 263 DBREF 6R8M C 22 113 UNP C4B8C2 C4B8C2_MAGOR 22 113 DBREF 6R8M E 186 263 UNP D5L9G5 D5L9G5_ORYSJ 186 263 DBREF 6R8M F 186 263 UNP D5L9G5 D5L9G5_ORYSJ 186 263 DBREF 6R8M G 22 113 UNP C4B8C2 C4B8C2_MAGOR 22 113 SEQADV 6R8M GLY A 184 UNP D5L9G5 EXPRESSION TAG SEQADV 6R8M PRO A 185 UNP D5L9G5 EXPRESSION TAG SEQADV 6R8M GLU A 262 UNP D5L9G5 LYS 262 CONFLICT SEQADV 6R8M GLY B 184 UNP D5L9G5 EXPRESSION TAG SEQADV 6R8M PRO B 185 UNP D5L9G5 EXPRESSION TAG SEQADV 6R8M GLU B 262 UNP D5L9G5 LYS 262 CONFLICT SEQADV 6R8M GLY E 184 UNP D5L9G5 EXPRESSION TAG SEQADV 6R8M PRO E 185 UNP D5L9G5 EXPRESSION TAG SEQADV 6R8M GLU E 262 UNP D5L9G5 LYS 262 CONFLICT SEQADV 6R8M GLY F 184 UNP D5L9G5 EXPRESSION TAG SEQADV 6R8M PRO F 185 UNP D5L9G5 EXPRESSION TAG SEQADV 6R8M GLU F 262 UNP D5L9G5 LYS 262 CONFLICT SEQRES 1 A 80 GLY PRO GLY LEU LYS GLN LYS ILE VAL ILE LYS VAL ALA SEQRES 2 A 80 MET GLU GLY ASN ASN CYS ARG SER LYS ALA MET ALA LEU SEQRES 3 A 80 VAL ALA SER THR GLY GLY VAL ASP SER VAL ALA LEU VAL SEQRES 4 A 80 GLY ASP LEU ARG ASP LYS ILE GLU VAL VAL GLY TYR GLY SEQRES 5 A 80 ILE ASP PRO ILE LYS LEU ILE SER ALA LEU ARG LYS LYS SEQRES 6 A 80 VAL GLY ASP ALA GLU LEU LEU GLN VAL SER GLN ALA LYS SEQRES 7 A 80 GLU ASP SEQRES 1 B 80 GLY PRO GLY LEU LYS GLN LYS ILE VAL ILE LYS VAL ALA SEQRES 2 B 80 MET GLU GLY ASN ASN CYS ARG SER LYS ALA MET ALA LEU SEQRES 3 B 80 VAL ALA SER THR GLY GLY VAL ASP SER VAL ALA LEU VAL SEQRES 4 B 80 GLY ASP LEU ARG ASP LYS ILE GLU VAL VAL GLY TYR GLY SEQRES 5 B 80 ILE ASP PRO ILE LYS LEU ILE SER ALA LEU ARG LYS LYS SEQRES 6 B 80 VAL GLY ASP ALA GLU LEU LEU GLN VAL SER GLN ALA LYS SEQRES 7 B 80 GLU ASP SEQRES 1 C 92 GLU THR GLY ASN LYS TYR ILE GLU LYS ARG ALA ILE ASP SEQRES 2 C 92 LEU SER ARG GLU ARG ASP PRO ASN PHE PHE ASP ASN PRO SEQRES 3 C 92 GLY ILE PRO VAL PRO GLU CYS PHE TRP PHE MET PHE LYS SEQRES 4 C 92 ASN ASN VAL ARG GLN ASP ALA GLY THR CYS TYR SER SER SEQRES 5 C 92 TRP LYS MET ASP MET LYS VAL GLY PRO ASN TRP VAL HIS SEQRES 6 C 92 ILE LYS SER ASP ASP ASN CYS ASN LEU SER GLY ASP PHE SEQRES 7 C 92 PRO PRO GLY TRP ILE VAL LEU GLY LYS LYS ARG PRO GLY SEQRES 8 C 92 PHE SEQRES 1 E 80 GLY PRO GLY LEU LYS GLN LYS ILE VAL ILE LYS VAL ALA SEQRES 2 E 80 MET GLU GLY ASN ASN CYS ARG SER LYS ALA MET ALA LEU SEQRES 3 E 80 VAL ALA SER THR GLY GLY VAL ASP SER VAL ALA LEU VAL SEQRES 4 E 80 GLY ASP LEU ARG ASP LYS ILE GLU VAL VAL GLY TYR GLY SEQRES 5 E 80 ILE ASP PRO ILE LYS LEU ILE SER ALA LEU ARG LYS LYS SEQRES 6 E 80 VAL GLY ASP ALA GLU LEU LEU GLN VAL SER GLN ALA LYS SEQRES 7 E 80 GLU ASP SEQRES 1 F 80 GLY PRO GLY LEU LYS GLN LYS ILE VAL ILE LYS VAL ALA SEQRES 2 F 80 MET GLU GLY ASN ASN CYS ARG SER LYS ALA MET ALA LEU SEQRES 3 F 80 VAL ALA SER THR GLY GLY VAL ASP SER VAL ALA LEU VAL SEQRES 4 F 80 GLY ASP LEU ARG ASP LYS ILE GLU VAL VAL GLY TYR GLY SEQRES 5 F 80 ILE ASP PRO ILE LYS LEU ILE SER ALA LEU ARG LYS LYS SEQRES 6 F 80 VAL GLY ASP ALA GLU LEU LEU GLN VAL SER GLN ALA LYS SEQRES 7 F 80 GLU ASP SEQRES 1 G 92 GLU THR GLY ASN LYS TYR ILE GLU LYS ARG ALA ILE ASP SEQRES 2 G 92 LEU SER ARG GLU ARG ASP PRO ASN PHE PHE ASP ASN PRO SEQRES 3 G 92 GLY ILE PRO VAL PRO GLU CYS PHE TRP PHE MET PHE LYS SEQRES 4 G 92 ASN ASN VAL ARG GLN ASP ALA GLY THR CYS TYR SER SER SEQRES 5 G 92 TRP LYS MET ASP MET LYS VAL GLY PRO ASN TRP VAL HIS SEQRES 6 G 92 ILE LYS SER ASP ASP ASN CYS ASN LEU SER GLY ASP PHE SEQRES 7 G 92 PRO PRO GLY TRP ILE VAL LEU GLY LYS LYS ARG PRO GLY SEQRES 8 G 92 PHE HET MPD C 201 8 HET CL C 202 1 HET MPD G 201 8 HET CL G 202 1 HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM CL CHLORIDE ION FORMUL 7 MPD 2(C6 H14 O2) FORMUL 8 CL 2(CL 1-) FORMUL 11 HOH *294(H2 O) HELIX 1 AA1 ARG A 203 SER A 212 1 10 HELIX 2 AA2 ASP A 237 GLY A 250 1 14 HELIX 3 AA3 ARG B 203 SER B 212 1 10 HELIX 4 AA4 ASP B 237 VAL B 249 1 13 HELIX 5 AA5 ASP C 34 GLU C 38 5 5 HELIX 6 AA6 ASN E 201 SER E 212 1 12 HELIX 7 AA7 ASP E 237 VAL E 249 1 13 HELIX 8 AA8 ARG F 203 SER F 212 1 10 HELIX 9 AA9 ASP F 237 VAL F 249 1 13 HELIX 10 AB1 ASP G 34 GLU G 38 5 5 SHEET 1 AA111 ALA A 252 GLN A 259 0 SHEET 2 AA111 LYS A 188 VAL A 195 -1 N VAL A 192 O LEU A 255 SHEET 3 AA111 LYS A 228 TYR A 234 -1 O VAL A 231 N ILE A 191 SHEET 4 AA111 VAL A 216 VAL A 222 -1 N ASP A 217 O VAL A 232 SHEET 5 AA111 VAL B 216 VAL B 222 -1 O ASP B 217 N LEU A 221 SHEET 6 AA111 LYS B 228 GLY B 233 -1 O VAL B 232 N ASP B 217 SHEET 7 AA111 GLN B 189 VAL B 195 -1 N ILE B 191 O VAL B 231 SHEET 8 AA111 ALA B 252 GLN B 259 -1 O LEU B 255 N VAL B 192 SHEET 9 AA111 TRP C 74 VAL C 80 -1 O LYS C 79 N LEU B 255 SHEET 10 AA111 ASN C 83 SER C 89 -1 O ASN C 83 N VAL C 80 SHEET 11 AA111 LEU C 95 SER C 96 -1 O SER C 96 N LYS C 88 SHEET 1 AA2 3 VAL C 63 CYS C 70 0 SHEET 2 AA2 3 CYS C 54 LYS C 60 -1 N MET C 58 O GLN C 65 SHEET 3 AA2 3 TRP C 103 LYS C 109 -1 O LYS C 108 N PHE C 55 SHEET 1 AA311 ALA E 252 SER E 258 0 SHEET 2 AA311 GLN E 189 VAL E 195 -1 N VAL E 192 O GLN E 256 SHEET 3 AA311 LYS E 228 GLY E 233 -1 O ILE E 229 N ILE E 193 SHEET 4 AA311 VAL E 216 VAL E 222 -1 N ASP E 217 O VAL E 232 SHEET 5 AA311 VAL F 216 VAL F 222 -1 O LEU F 221 N ASP E 217 SHEET 6 AA311 LYS F 228 GLY F 233 -1 O VAL F 232 N ASP F 217 SHEET 7 AA311 GLN F 189 VAL F 195 -1 N GLN F 189 O GLY F 233 SHEET 8 AA311 ALA F 252 GLN F 259 -1 O LEU F 255 N VAL F 192 SHEET 9 AA311 TRP G 74 VAL G 80 -1 O LYS G 79 N LEU F 255 SHEET 10 AA311 ASN G 83 SER G 89 -1 O ASN G 83 N VAL G 80 SHEET 11 AA311 LEU G 95 SER G 96 -1 O SER G 96 N LYS G 88 SHEET 1 AA4 3 VAL G 63 CYS G 70 0 SHEET 2 AA4 3 CYS G 54 LYS G 60 -1 N MET G 58 O GLN G 65 SHEET 3 AA4 3 TRP G 103 LYS G 109 -1 O ILE G 104 N PHE G 59 SSBOND 1 CYS C 54 CYS C 93 1555 1555 2.08 SSBOND 2 CYS G 54 CYS G 93 1555 1555 2.10 SITE 1 AC1 1 LEU E 225 SITE 1 AC2 5 HOH B 316 CYS C 70 TYR C 71 HOH C 331 SITE 2 AC2 5 HOH C 358 SITE 1 AC3 2 LEU A 225 TRP G 84 SITE 1 AC4 3 HOH F 320 CYS G 70 TYR G 71 CRYST1 66.456 80.701 105.577 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015048 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012391 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009472 0.00000