HEADER TRANSFERASE 11-APR-19 6RCT TITLE CRYSTAL STRUCTURE OF CLK3 IN COMPLEX WITH T3-CLK COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUAL SPECIFICITY PROTEIN KINASE CLK3; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CDC-LIKE KINASE 3; COMPND 5 EC: 2.7.12.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CLK3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: BL21(DE3)-R3-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS CLK3, SPLICING KINASE, PROBE, KINASE INHIBITOR, STRUCTURAL GENOMICS, KEYWDS 2 STRUCTURAL GENOMICS CONSORTIUM, SGC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.CHAIKUAD,C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,S.KNAPP,STRUCTURAL AUTHOR 2 GENOMICS CONSORTIUM (SGC) REVDAT 4 24-JAN-24 6RCT 1 REMARK REVDAT 3 03-JUN-20 6RCT 1 SOURCE REMARK REVDAT 2 26-JUN-19 6RCT 1 TITLE REVDAT 1 01-MAY-19 6RCT 0 JRNL AUTH A.CHAIKUAD,C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,S.KNAPP, JRNL AUTH 2 STRUCTURAL GENOMICS CONSORTIUM (SGC) JRNL TITL CRYSTAL STRUCTURE OF CLK3 IN COMPLEX WITH TP003 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 69.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 42124 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2206 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.32 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.38 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3135 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.76 REMARK 3 BIN R VALUE (WORKING SET) : 0.3220 REMARK 3 BIN FREE R VALUE SET COUNT : 140 REMARK 3 BIN FREE R VALUE : 0.3650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5795 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 112 REMARK 3 SOLVENT ATOMS : 225 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.42000 REMARK 3 B22 (A**2) : -0.97000 REMARK 3 B33 (A**2) : -0.40000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.52000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.294 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.222 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.212 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.908 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6177 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5630 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8345 ; 1.335 ; 1.938 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13072 ; 0.827 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 729 ; 6.533 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 326 ;34.171 ;23.620 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1094 ;15.292 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 44 ;18.664 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 862 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7106 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1354 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 135 483 B 135 483 24092 0.040 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 135 A 367 REMARK 3 ORIGIN FOR THE GROUP (A): -29.4060 -47.1630 54.1270 REMARK 3 T TENSOR REMARK 3 T11: 0.0460 T22: 0.4268 REMARK 3 T33: 0.4325 T12: -0.0118 REMARK 3 T13: 0.0007 T23: 0.0324 REMARK 3 L TENSOR REMARK 3 L11: 1.4684 L22: 1.4268 REMARK 3 L33: 1.1692 L12: -0.4606 REMARK 3 L13: -0.3645 L23: 0.2410 REMARK 3 S TENSOR REMARK 3 S11: -0.0890 S12: -0.0940 S13: -0.1672 REMARK 3 S21: 0.1440 S22: -0.1129 S23: 0.0943 REMARK 3 S31: 0.2013 S32: -0.0177 S33: 0.2019 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 368 A 484 REMARK 3 ORIGIN FOR THE GROUP (A): -26.6530 -25.7350 44.9180 REMARK 3 T TENSOR REMARK 3 T11: 0.0542 T22: 0.3648 REMARK 3 T33: 0.4857 T12: -0.0026 REMARK 3 T13: -0.0357 T23: 0.0662 REMARK 3 L TENSOR REMARK 3 L11: 1.7135 L22: 0.8427 REMARK 3 L33: 3.2746 L12: -0.2070 REMARK 3 L13: -0.3456 L23: -0.1150 REMARK 3 S TENSOR REMARK 3 S11: 0.1088 S12: 0.1777 S13: 0.4370 REMARK 3 S21: 0.1237 S22: -0.0966 S23: -0.0930 REMARK 3 S31: -0.2821 S32: -0.0665 S33: -0.0122 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 134 B 326 REMARK 3 ORIGIN FOR THE GROUP (A): -0.3490 -12.7170 13.8920 REMARK 3 T TENSOR REMARK 3 T11: 0.1471 T22: 0.4045 REMARK 3 T33: 0.3635 T12: -0.0178 REMARK 3 T13: -0.0722 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 2.1882 L22: 1.8687 REMARK 3 L33: 0.9197 L12: 1.2865 REMARK 3 L13: 0.5256 L23: 0.2253 REMARK 3 S TENSOR REMARK 3 S11: -0.0991 S12: 0.0376 S13: 0.2804 REMARK 3 S21: -0.3915 S22: -0.0987 S23: 0.1790 REMARK 3 S31: -0.1619 S32: 0.0321 S33: 0.1978 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 327 B 484 REMARK 3 ORIGIN FOR THE GROUP (A): 5.4250 -33.3270 26.1820 REMARK 3 T TENSOR REMARK 3 T11: 0.0509 T22: 0.4766 REMARK 3 T33: 0.4782 T12: 0.0287 REMARK 3 T13: -0.0068 T23: 0.0364 REMARK 3 L TENSOR REMARK 3 L11: 1.7407 L22: 1.0606 REMARK 3 L33: 1.5533 L12: 0.2010 REMARK 3 L13: -0.0219 L23: -0.5999 REMARK 3 S TENSOR REMARK 3 S11: -0.0186 S12: -0.2561 S13: -0.3807 REMARK 3 S21: -0.2237 S22: -0.1004 S23: -0.1196 REMARK 3 S31: 0.0895 S32: 0.2313 S33: 0.1190 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 6RCT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-APR-19. REMARK 100 THE DEPOSITION ID IS D_1292101808. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-SEP-17 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91840 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.32 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44358 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.320 REMARK 200 RESOLUTION RANGE LOW (A) : 69.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.13600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.32 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.76300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2EU9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 10% ETHYLENE GLYCOL, 0.2M REMARK 280 SODIUM NITRATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 61.66450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 125 REMARK 465 MET A 126 REMARK 465 GLN A 127 REMARK 465 SER A 128 REMARK 465 SER A 129 REMARK 465 LYS A 130 REMARK 465 ARG A 131 REMARK 465 SER A 132 REMARK 465 SER A 133 REMARK 465 ARG A 134 REMARK 465 SER B 125 REMARK 465 MET B 126 REMARK 465 GLN B 127 REMARK 465 SER B 128 REMARK 465 SER B 129 REMARK 465 LYS B 130 REMARK 465 ARG B 131 REMARK 465 SER B 132 REMARK 465 SER B 133 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 135 OG REMARK 470 ARG B 134 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 483 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 415 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 141 -169.22 -75.53 REMARK 500 ARG A 155 -52.83 -152.89 REMARK 500 HIS A 176 21.19 -78.02 REMARK 500 THR A 282 -22.50 73.82 REMARK 500 ASP A 320 94.18 65.16 REMARK 500 ALA A 336 150.27 73.43 REMARK 500 ALA A 352 -137.39 -152.83 REMARK 500 LYS A 403 65.04 -100.74 REMARK 500 GLU B 154 44.83 36.69 REMARK 500 ARG B 155 -52.14 -152.42 REMARK 500 HIS B 176 22.31 -77.29 REMARK 500 THR B 282 -20.14 71.66 REMARK 500 ASP B 320 94.57 64.39 REMARK 500 ALA B 336 150.43 74.04 REMARK 500 ALA B 352 -138.53 -153.22 REMARK 500 LYS B 403 64.90 -100.45 REMARK 500 TYR B 408 119.76 -160.24 REMARK 500 HIS B 483 64.67 -103.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JWN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JWN B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 505 DBREF 6RCT A 127 484 UNP P49761 CLK3_HUMAN 127 484 DBREF 6RCT B 127 484 UNP P49761 CLK3_HUMAN 127 484 SEQADV 6RCT SER A 125 UNP P49761 EXPRESSION TAG SEQADV 6RCT MET A 126 UNP P49761 EXPRESSION TAG SEQADV 6RCT SER B 125 UNP P49761 EXPRESSION TAG SEQADV 6RCT MET B 126 UNP P49761 EXPRESSION TAG SEQRES 1 A 360 SER MET GLN SER SER LYS ARG SER SER ARG SER VAL GLU SEQRES 2 A 360 ASP ASP LYS GLU GLY HIS LEU VAL CYS ARG ILE GLY ASP SEQRES 3 A 360 TRP LEU GLN GLU ARG TYR GLU ILE VAL GLY ASN LEU GLY SEQRES 4 A 360 GLU GLY THR PHE GLY LYS VAL VAL GLU CYS LEU ASP HIS SEQRES 5 A 360 ALA ARG GLY LYS SER GLN VAL ALA LEU LYS ILE ILE ARG SEQRES 6 A 360 ASN VAL GLY LYS TYR ARG GLU ALA ALA ARG LEU GLU ILE SEQRES 7 A 360 ASN VAL LEU LYS LYS ILE LYS GLU LYS ASP LYS GLU ASN SEQRES 8 A 360 LYS PHE LEU CYS VAL LEU MET SER ASP TRP PHE ASN PHE SEQRES 9 A 360 HIS GLY HIS MET CYS ILE ALA PHE GLU LEU LEU GLY LYS SEQRES 10 A 360 ASN THR PHE GLU PHE LEU LYS GLU ASN ASN PHE GLN PRO SEQRES 11 A 360 TYR PRO LEU PRO HIS VAL ARG HIS MET ALA TYR GLN LEU SEQRES 12 A 360 CYS HIS ALA LEU ARG PHE LEU HIS GLU ASN GLN LEU THR SEQRES 13 A 360 HIS THR ASP LEU LYS PRO GLU ASN ILE LEU PHE VAL ASN SEQRES 14 A 360 SER GLU PHE GLU THR LEU TYR ASN GLU HIS LYS SER CYS SEQRES 15 A 360 GLU GLU LYS SER VAL LYS ASN THR SER ILE ARG VAL ALA SEQRES 16 A 360 ASP PHE GLY SER ALA THR PHE ASP HIS GLU HIS HIS THR SEQRES 17 A 360 THR ILE VAL ALA THR ARG HIS TYR ARG PRO PRO GLU VAL SEQRES 18 A 360 ILE LEU GLU LEU GLY TRP ALA GLN PRO CYS ASP VAL TRP SEQRES 19 A 360 SER ILE GLY CYS ILE LEU PHE GLU TYR TYR ARG GLY PHE SEQRES 20 A 360 THR LEU PHE GLN THR HIS GLU ASN ARG GLU HIS LEU VAL SEQRES 21 A 360 MET MET GLU LYS ILE LEU GLY PRO ILE PRO SER HIS MET SEQRES 22 A 360 ILE HIS ARG THR ARG LYS GLN LYS TYR PHE TYR LYS GLY SEQRES 23 A 360 GLY LEU VAL TRP ASP GLU ASN SER SER ASP GLY ARG TYR SEQRES 24 A 360 VAL LYS GLU ASN CYS LYS PRO LEU LYS SER TYR MET LEU SEQRES 25 A 360 GLN ASP SER LEU GLU HIS VAL GLN LEU PHE ASP LEU MET SEQRES 26 A 360 ARG ARG MET LEU GLU PHE ASP PRO ALA GLN ARG ILE THR SEQRES 27 A 360 LEU ALA GLU ALA LEU LEU HIS PRO PHE PHE ALA GLY LEU SEQRES 28 A 360 THR PRO GLU GLU ARG SER PHE HIS THR SEQRES 1 B 360 SER MET GLN SER SER LYS ARG SER SER ARG SER VAL GLU SEQRES 2 B 360 ASP ASP LYS GLU GLY HIS LEU VAL CYS ARG ILE GLY ASP SEQRES 3 B 360 TRP LEU GLN GLU ARG TYR GLU ILE VAL GLY ASN LEU GLY SEQRES 4 B 360 GLU GLY THR PHE GLY LYS VAL VAL GLU CYS LEU ASP HIS SEQRES 5 B 360 ALA ARG GLY LYS SER GLN VAL ALA LEU LYS ILE ILE ARG SEQRES 6 B 360 ASN VAL GLY LYS TYR ARG GLU ALA ALA ARG LEU GLU ILE SEQRES 7 B 360 ASN VAL LEU LYS LYS ILE LYS GLU LYS ASP LYS GLU ASN SEQRES 8 B 360 LYS PHE LEU CYS VAL LEU MET SER ASP TRP PHE ASN PHE SEQRES 9 B 360 HIS GLY HIS MET CYS ILE ALA PHE GLU LEU LEU GLY LYS SEQRES 10 B 360 ASN THR PHE GLU PHE LEU LYS GLU ASN ASN PHE GLN PRO SEQRES 11 B 360 TYR PRO LEU PRO HIS VAL ARG HIS MET ALA TYR GLN LEU SEQRES 12 B 360 CYS HIS ALA LEU ARG PHE LEU HIS GLU ASN GLN LEU THR SEQRES 13 B 360 HIS THR ASP LEU LYS PRO GLU ASN ILE LEU PHE VAL ASN SEQRES 14 B 360 SER GLU PHE GLU THR LEU TYR ASN GLU HIS LYS SER CYS SEQRES 15 B 360 GLU GLU LYS SER VAL LYS ASN THR SER ILE ARG VAL ALA SEQRES 16 B 360 ASP PHE GLY SER ALA THR PHE ASP HIS GLU HIS HIS THR SEQRES 17 B 360 THR ILE VAL ALA THR ARG HIS TYR ARG PRO PRO GLU VAL SEQRES 18 B 360 ILE LEU GLU LEU GLY TRP ALA GLN PRO CYS ASP VAL TRP SEQRES 19 B 360 SER ILE GLY CYS ILE LEU PHE GLU TYR TYR ARG GLY PHE SEQRES 20 B 360 THR LEU PHE GLN THR HIS GLU ASN ARG GLU HIS LEU VAL SEQRES 21 B 360 MET MET GLU LYS ILE LEU GLY PRO ILE PRO SER HIS MET SEQRES 22 B 360 ILE HIS ARG THR ARG LYS GLN LYS TYR PHE TYR LYS GLY SEQRES 23 B 360 GLY LEU VAL TRP ASP GLU ASN SER SER ASP GLY ARG TYR SEQRES 24 B 360 VAL LYS GLU ASN CYS LYS PRO LEU LYS SER TYR MET LEU SEQRES 25 B 360 GLN ASP SER LEU GLU HIS VAL GLN LEU PHE ASP LEU MET SEQRES 26 B 360 ARG ARG MET LEU GLU PHE ASP PRO ALA GLN ARG ILE THR SEQRES 27 B 360 LEU ALA GLU ALA LEU LEU HIS PRO PHE PHE ALA GLY LEU SEQRES 28 B 360 THR PRO GLU GLU ARG SER PHE HIS THR HET JWN A 501 36 HET EDO A 502 4 HET EDO A 503 4 HET EDO A 504 4 HET EDO A 505 4 HET EDO A 506 4 HET EDO A 507 4 HET JWN B 501 36 HET EDO B 502 4 HET EDO B 503 4 HET EDO B 504 4 HET EDO B 505 4 HETNAM JWN 4-[2-METHYL-1-(4-METHYLPIPERAZIN-1-YL)-1-OXIDANYLIDENE- HETNAM 2 JWN PROPAN-2-YL]-~{N}-(6-PYRIDIN-4-YLIMIDAZO[1,2- HETNAM 3 JWN A]PYRIDIN-2-YL)BENZAMIDE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 JWN 2(C28 H30 N6 O2) FORMUL 4 EDO 10(C2 H6 O2) FORMUL 15 HOH *225(H2 O) HELIX 1 AA1 VAL A 191 ASP A 212 1 22 HELIX 2 AA2 ASN A 242 ASN A 250 1 9 HELIX 3 AA3 PRO A 256 ASN A 277 1 22 HELIX 4 AA4 LYS A 285 GLU A 287 5 3 HELIX 5 AA5 THR A 337 ARG A 341 5 5 HELIX 6 AA6 PRO A 342 LEU A 347 1 6 HELIX 7 AA7 GLN A 353 GLY A 370 1 18 HELIX 8 AA8 GLU A 378 GLY A 391 1 14 HELIX 9 AA9 PRO A 394 THR A 401 1 8 HELIX 10 AB1 LYS A 403 LYS A 405 5 3 HELIX 11 AB2 SER A 418 CYS A 428 1 11 HELIX 12 AB3 PRO A 430 MET A 435 5 6 HELIX 13 AB4 SER A 439 LEU A 453 1 15 HELIX 14 AB5 THR A 462 LEU A 467 1 6 HELIX 15 AB6 LEU A 468 LEU A 475 5 8 HELIX 16 AB7 THR A 476 PHE A 482 1 7 HELIX 17 AB8 VAL B 191 ASP B 212 1 22 HELIX 18 AB9 ASN B 242 ASN B 250 1 9 HELIX 19 AC1 PRO B 256 ASN B 277 1 22 HELIX 20 AC2 LYS B 285 GLU B 287 5 3 HELIX 21 AC3 THR B 337 ARG B 341 5 5 HELIX 22 AC4 PRO B 342 LEU B 347 1 6 HELIX 23 AC5 GLN B 353 GLY B 370 1 18 HELIX 24 AC6 GLU B 378 GLY B 391 1 14 HELIX 25 AC7 PRO B 394 THR B 401 1 8 HELIX 26 AC8 LYS B 403 LYS B 405 5 3 HELIX 27 AC9 SER B 418 CYS B 428 1 11 HELIX 28 AD1 PRO B 430 MET B 435 5 6 HELIX 29 AD2 SER B 439 LEU B 453 1 15 HELIX 30 AD3 THR B 462 LEU B 467 1 6 HELIX 31 AD4 LEU B 468 LEU B 475 5 8 HELIX 32 AD5 THR B 476 PHE B 482 1 7 SHEET 1 AA1 6 TRP A 151 LEU A 152 0 SHEET 2 AA1 6 TYR A 156 GLY A 165 -1 O TYR A 156 N LEU A 152 SHEET 3 AA1 6 GLY A 168 ASP A 175 -1 O VAL A 170 N GLY A 163 SHEET 4 AA1 6 SER A 181 ILE A 188 -1 O ILE A 187 N LYS A 169 SHEET 5 AA1 6 HIS A 231 GLU A 237 -1 O PHE A 236 N ALA A 184 SHEET 6 AA1 6 MET A 222 PHE A 228 -1 N ASP A 224 O ALA A 235 SHEET 1 AA2 2 LEU A 279 THR A 280 0 SHEET 2 AA2 2 THR A 325 PHE A 326 -1 O THR A 325 N THR A 280 SHEET 1 AA3 2 ILE A 289 PHE A 291 0 SHEET 2 AA3 2 ILE A 316 VAL A 318 -1 O ARG A 317 N LEU A 290 SHEET 1 AA4 2 PHE A 296 ASN A 301 0 SHEET 2 AA4 2 CYS A 306 VAL A 311 -1 O GLU A 308 N LEU A 299 SHEET 1 AA5 2 PHE A 407 TYR A 408 0 SHEET 2 AA5 2 GLY A 411 LEU A 412 -1 O GLY A 411 N TYR A 408 SHEET 1 AA6 6 TRP B 151 LEU B 152 0 SHEET 2 AA6 6 TYR B 156 GLY B 165 -1 O TYR B 156 N LEU B 152 SHEET 3 AA6 6 GLY B 168 ASP B 175 -1 O VAL B 170 N GLY B 163 SHEET 4 AA6 6 SER B 181 ILE B 188 -1 O ILE B 187 N LYS B 169 SHEET 5 AA6 6 HIS B 231 GLU B 237 -1 O PHE B 236 N ALA B 184 SHEET 6 AA6 6 MET B 222 PHE B 228 -1 N ASP B 224 O ALA B 235 SHEET 1 AA7 2 LEU B 279 THR B 280 0 SHEET 2 AA7 2 THR B 325 PHE B 326 -1 O THR B 325 N THR B 280 SHEET 1 AA8 2 ILE B 289 PHE B 291 0 SHEET 2 AA8 2 ILE B 316 VAL B 318 -1 O ARG B 317 N LEU B 290 SHEET 1 AA9 2 PHE B 296 ASN B 301 0 SHEET 2 AA9 2 CYS B 306 VAL B 311 -1 O GLU B 308 N LEU B 299 SHEET 1 AB1 2 PHE B 407 TYR B 408 0 SHEET 2 AB1 2 GLY B 411 LEU B 412 -1 O GLY B 411 N TYR B 408 SITE 1 AC1 10 ASN A 161 LEU A 162 ALA A 184 LYS A 186 SITE 2 AC1 10 PHE A 236 GLU A 237 LEU A 239 GLY A 240 SITE 3 AC1 10 LEU A 290 ASP A 320 SITE 1 AC2 5 LEU A 218 GLN A 266 SER A 315 ARG A 317 SITE 2 AC2 5 PHE A 482 SITE 1 AC3 2 VAL A 145 TRP A 151 SITE 1 AC4 2 PRO A 254 GLU A 308 SITE 1 AC5 3 ASP A 327 HIS A 328 GLU B 416 SITE 1 AC6 5 ASP A 327 GLU A 329 HOH A 628 ARG B 422 SITE 2 AC6 5 LYS B 425 SITE 1 AC7 4 ARG A 451 GLN A 459 ILE A 461 GLU A 465 SITE 1 AC8 12 ASN B 161 LEU B 162 ALA B 184 LYS B 186 SITE 2 AC8 12 GLU B 201 PHE B 236 GLU B 237 LEU B 239 SITE 3 AC8 12 GLY B 240 LYS B 241 LEU B 290 ASP B 320 SITE 1 AC9 3 VAL B 413 TRP B 414 GLU B 416 SITE 1 AD1 6 ARG A 400 HIS B 339 GLN B 375 THR B 376 SITE 2 AD1 6 HIS B 377 HOH B 612 SITE 1 AD2 6 ILE B 208 ASN B 215 CYS B 219 VAL B 220 SITE 2 AD2 6 LEU B 221 MET B 222 SITE 1 AD3 2 TYR B 265 HIS B 269 CRYST1 61.788 123.329 69.589 90.00 92.64 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016184 0.000000 0.000746 0.00000 SCALE2 0.000000 0.008108 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014385 0.00000