HEADER TRANSFERASE 16-APR-19 6RGE
TITLE CRYSTAL STRUCTURE OF NAD KINASE 1 FROM LISTERIA MONOCYTOGENES IN
TITLE 2 COMPLEX WITH AN INHIBITOR
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: NAD KINASE 1;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: ATP-DEPENDENT NAD KINASE;
COMPND 5 EC: 2.7.1.23;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES EGD-E;
SOURCE 3 ORGANISM_TAXID: 169963;
SOURCE 4 VARIANT: ATCC BAA-679 / EGD-E;
SOURCE 5 GENE: NADK1, LMO0968;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS TETRAMERIC NAD KINASE, TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR M.GELIN,G.LABESSE
REVDAT 2 15-MAY-24 6RGE 1 REMARK
REVDAT 1 13-MAY-20 6RGE 0
JRNL AUTH M.GELIN,G.LABESSE
JRNL TITL CRYSTAL STRUCTURE OF NAD KINASE 1 FROM LISTERIA
JRNL TITL 2 MONOCYTOGENES IN COMPLEX WITH AN INHIBITOR
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. 1.80 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.14_3260
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.14
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350
REMARK 3 COMPLETENESS FOR RANGE (%) : 81.0
REMARK 3 NUMBER OF REFLECTIONS : 21413
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.202
REMARK 3 R VALUE (WORKING SET) : 0.201
REMARK 3 FREE R VALUE : 0.223
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800
REMARK 3 FREE R VALUE TEST SET COUNT : 1028
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 59.1719 - 3.4451 0.96 3632 183 0.1766 0.2061
REMARK 3 2 3.4451 - 2.7345 0.94 3374 180 0.2010 0.2093
REMARK 3 3 2.7345 - 2.3888 0.99 3543 185 0.2060 0.2001
REMARK 3 4 2.3888 - 2.1704 0.99 3561 158 0.2269 0.2586
REMARK 3 5 2.1704 - 2.0148 0.96 3410 182 0.2302 0.3039
REMARK 3 6 2.0148 - 1.8960 0.64 2274 108 0.2462 0.2557
REMARK 3 7 1.8960 - 1.8011 0.17 591 32 0.2390 0.2302
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.540
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.67
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : NULL NULL
REMARK 3 ANGLE : NULL NULL
REMARK 3 CHIRALITY : NULL NULL
REMARK 3 PLANARITY : NULL NULL
REMARK 3 DIHEDRAL : NULL NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 8
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 79 )
REMARK 3 ORIGIN FOR THE GROUP (A): 11.8674 23.2990 21.9907
REMARK 3 T TENSOR
REMARK 3 T11: 0.3672 T22: 0.3116
REMARK 3 T33: 0.2537 T12: 0.0920
REMARK 3 T13: 0.0527 T23: -0.1048
REMARK 3 L TENSOR
REMARK 3 L11: 4.1718 L22: 1.3870
REMARK 3 L33: 4.9493 L12: -1.3690
REMARK 3 L13: -2.2527 L23: 0.9939
REMARK 3 S TENSOR
REMARK 3 S11: -0.1531 S12: -0.3180 S13: 0.1942
REMARK 3 S21: 0.2261 S22: 0.0341 S23: 0.0375
REMARK 3 S31: -0.3311 S32: -0.3137 S33: 0.0816
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 80 THROUGH 120 )
REMARK 3 ORIGIN FOR THE GROUP (A): 16.4393 25.7094 12.7623
REMARK 3 T TENSOR
REMARK 3 T11: 0.2853 T22: 0.2646
REMARK 3 T33: 0.3741 T12: 0.1655
REMARK 3 T13: 0.0484 T23: -0.0368
REMARK 3 L TENSOR
REMARK 3 L11: 2.1836 L22: 2.5256
REMARK 3 L33: 5.8867 L12: -0.4068
REMARK 3 L13: -1.0884 L23: 0.8579
REMARK 3 S TENSOR
REMARK 3 S11: 0.0874 S12: -0.2493 S13: 0.5790
REMARK 3 S21: 0.0323 S22: -0.0765 S23: 0.0231
REMARK 3 S31: -0.9381 S32: -0.2199 S33: 0.0238
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 121 THROUGH 141 )
REMARK 3 ORIGIN FOR THE GROUP (A): 14.6550 8.3993 -7.2996
REMARK 3 T TENSOR
REMARK 3 T11: 0.1427 T22: 0.2624
REMARK 3 T33: 0.2694 T12: 0.0128
REMARK 3 T13: -0.0397 T23: -0.0177
REMARK 3 L TENSOR
REMARK 3 L11: 1.7048 L22: 2.4030
REMARK 3 L33: 8.9351 L12: -0.6336
REMARK 3 L13: 0.0939 L23: 1.3896
REMARK 3 S TENSOR
REMARK 3 S11: 0.0906 S12: 0.0873 S13: -0.1771
REMARK 3 S21: -0.0160 S22: -0.1714 S23: 0.4486
REMARK 3 S31: 0.6634 S32: -0.7906 S33: 0.0905
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 142 THROUGH 184 )
REMARK 3 ORIGIN FOR THE GROUP (A): 23.3505 11.8154 -1.9955
REMARK 3 T TENSOR
REMARK 3 T11: 0.1188 T22: 0.1385
REMARK 3 T33: 0.1532 T12: 0.0344
REMARK 3 T13: 0.0015 T23: -0.0023
REMARK 3 L TENSOR
REMARK 3 L11: 1.4021 L22: 1.6405
REMARK 3 L33: 4.3286 L12: 0.4653
REMARK 3 L13: 0.5861 L23: 0.6542
REMARK 3 S TENSOR
REMARK 3 S11: 0.0069 S12: 0.0361 S13: 0.1101
REMARK 3 S21: -0.0648 S22: -0.0245 S23: 0.1227
REMARK 3 S31: -0.1397 S32: -0.1080 S33: 0.0159
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 185 THROUGH 216 )
REMARK 3 ORIGIN FOR THE GROUP (A): 20.5733 9.4065 -11.2692
REMARK 3 T TENSOR
REMARK 3 T11: 0.1851 T22: 0.2294
REMARK 3 T33: 0.2032 T12: 0.0271
REMARK 3 T13: -0.0200 T23: 0.0099
REMARK 3 L TENSOR
REMARK 3 L11: 3.3524 L22: 3.9675
REMARK 3 L33: 4.4069 L12: -0.1403
REMARK 3 L13: 0.5451 L23: -0.1007
REMARK 3 S TENSOR
REMARK 3 S11: 0.0362 S12: 0.3498 S13: -0.0918
REMARK 3 S21: -0.3613 S22: -0.0670 S23: 0.6375
REMARK 3 S31: 0.2409 S32: -0.3010 S33: 0.0364
REMARK 3 TLS GROUP : 6
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 217 THROUGH 238 )
REMARK 3 ORIGIN FOR THE GROUP (A): 9.1986 13.7245 -4.1276
REMARK 3 T TENSOR
REMARK 3 T11: 0.1916 T22: 0.5048
REMARK 3 T33: 0.4396 T12: 0.0875
REMARK 3 T13: -0.0142 T23: -0.0380
REMARK 3 L TENSOR
REMARK 3 L11: 2.3311 L22: 4.2137
REMARK 3 L33: 6.4659 L12: -0.1173
REMARK 3 L13: 0.8784 L23: 0.4096
REMARK 3 S TENSOR
REMARK 3 S11: -0.0114 S12: 0.0273 S13: -0.0001
REMARK 3 S21: -0.2002 S22: -0.1612 S23: 0.9039
REMARK 3 S31: 0.1369 S32: -1.6790 S33: 0.0764
REMARK 3 TLS GROUP : 7
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 239 THROUGH 252 )
REMARK 3 ORIGIN FOR THE GROUP (A): 23.2659 26.6130 15.0783
REMARK 3 T TENSOR
REMARK 3 T11: 0.3871 T22: 0.2722
REMARK 3 T33: 0.3464 T12: 0.0376
REMARK 3 T13: 0.0496 T23: -0.1255
REMARK 3 L TENSOR
REMARK 3 L11: 8.1990 L22: 5.4742
REMARK 3 L33: 1.7647 L12: -3.4965
REMARK 3 L13: 2.3216 L23: -0.6786
REMARK 3 S TENSOR
REMARK 3 S11: -0.3128 S12: -1.0650 S13: 1.0645
REMARK 3 S21: 0.2006 S22: 0.1667 S23: -0.4838
REMARK 3 S31: -0.7786 S32: -0.4706 S33: 0.1742
REMARK 3 TLS GROUP : 8
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 253 THROUGH 264 )
REMARK 3 ORIGIN FOR THE GROUP (A): 31.7327 12.8272 17.5724
REMARK 3 T TENSOR
REMARK 3 T11: 0.2428 T22: 0.2248
REMARK 3 T33: 0.1945 T12: 0.0069
REMARK 3 T13: 0.0075 T23: -0.0514
REMARK 3 L TENSOR
REMARK 3 L11: 7.1738 L22: 2.7002
REMARK 3 L33: 7.2889 L12: -0.6117
REMARK 3 L13: -0.2529 L23: 2.7339
REMARK 3 S TENSOR
REMARK 3 S11: 0.0542 S12: -0.7992 S13: 0.0103
REMARK 3 S21: 0.7349 S22: 0.0220 S23: -0.2981
REMARK 3 S31: -0.2162 S32: 0.1712 S33: 0.0424
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6RGE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-APR-19.
REMARK 100 THE DEPOSITION ID IS D_1292101876.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 24-OCT-16
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 5.0
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : ESRF
REMARK 200 BEAMLINE : MASSIF-3
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.967700
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : AIMLESS
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25981
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.799
REMARK 200 RESOLUTION RANGE LOW (A) : 59.140
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0
REMARK 200 DATA REDUNDANCY : 3.900
REMARK 200 R MERGE (I) : 0.03600
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.2000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83
REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7
REMARK 200 DATA REDUNDANCY IN SHELL : 3.90
REMARK 200 R MERGE FOR SHELL (I) : 0.47200
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHENIX
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 45.57
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 30 MM NABR, 220 MM KCITRATE, GLYCEROL
REMARK 280 6%, 15-16% W/V PEG400, PH 5.0, EVAPORATION, TEMPERATURE 291.15K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z
REMARK 290 3555 -X,Y,-Z
REMARK 290 4555 X,-Y,-Z
REMARK 290 5555 X+1/2,Y+1/2,Z+1/2
REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2
REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2
REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 31.54000
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.61000
REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 59.14000
REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 31.54000
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.61000
REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 59.14000
REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 31.54000
REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 37.61000
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 59.14000
REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 31.54000
REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 37.61000
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 59.14000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 63.08000
REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 63.08000
REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000
REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 375
REMARK 375 SPECIAL POSITION
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL
REMARK 375 POSITIONS.
REMARK 375
REMARK 375 ATOM RES CSSEQI
REMARK 375 HOH A 421 LIES ON A SPECIAL POSITION.
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A 110
REMARK 465 ILE A 111
REMARK 465 GLY A 112
REMARK 465 LYS A 113
REMARK 465 LYS A 114
REMARK 465 LEU A 265
REMARK 465 GLU A 266
REMARK 465 HIS A 267
REMARK 465 HIS A 268
REMARK 465 HIS A 269
REMARK 465 HIS A 270
REMARK 465 HIS A 271
REMARK 465 HIS A 272
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 LYS A 85 CG CD CE NZ
REMARK 470 LYS A 88 CG CD CE NZ
REMARK 470 GLU A 94 CG CD OE1 OE2
REMARK 470 LYS A 108 CG CD CE NZ
REMARK 470 ARG A 190 CG CD NE CZ NH1 NH2
REMARK 470 ILE A 226 CG1 CG2 CD1
REMARK 470 GLN A 232 CG CD OE1 NE2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASN A 122 -69.23 -98.09
REMARK 500 SER A 129 -75.65 -86.51
REMARK 500 ALA A 162 -126.97 -110.12
REMARK 500 HIS A 204 -3.16 72.17
REMARK 500 ASN A 213 -79.83 -121.43
REMARK 500 ASP A 222 -129.39 53.85
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CIT A 301
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue K1Z A 302
DBREF 6RGE A 1 264 UNP Q8Y8D7 NADK1_LISMO 1 264
SEQADV 6RGE LEU A 265 UNP Q8Y8D7 EXPRESSION TAG
SEQADV 6RGE GLU A 266 UNP Q8Y8D7 EXPRESSION TAG
SEQADV 6RGE HIS A 267 UNP Q8Y8D7 EXPRESSION TAG
SEQADV 6RGE HIS A 268 UNP Q8Y8D7 EXPRESSION TAG
SEQADV 6RGE HIS A 269 UNP Q8Y8D7 EXPRESSION TAG
SEQADV 6RGE HIS A 270 UNP Q8Y8D7 EXPRESSION TAG
SEQADV 6RGE HIS A 271 UNP Q8Y8D7 EXPRESSION TAG
SEQADV 6RGE HIS A 272 UNP Q8Y8D7 EXPRESSION TAG
SEQRES 1 A 272 MET LYS TYR MET ILE THR SER LYS GLY ASP GLU LYS SER
SEQRES 2 A 272 ASP LEU LEU ARG LEU ASN MET ILE ALA GLY PHE GLY GLU
SEQRES 3 A 272 TYR ASP MET GLU TYR ASP ASP VAL GLU PRO GLU ILE VAL
SEQRES 4 A 272 ILE SER ILE GLY GLY ASP GLY THR PHE LEU SER ALA PHE
SEQRES 5 A 272 HIS GLN TYR GLU GLU ARG LEU ASP GLU ILE ALA PHE ILE
SEQRES 6 A 272 GLY ILE HIS THR GLY HIS LEU GLY PHE TYR ALA ASP TRP
SEQRES 7 A 272 ARG PRO ALA GLU ALA ASP LYS LEU VAL LYS LEU LEU ALA
SEQRES 8 A 272 LYS GLY GLU TYR GLN LYS VAL SER TYR PRO LEU LEU LYS
SEQRES 9 A 272 THR THR VAL LYS TYR GLY ILE GLY LYS LYS GLU ALA THR
SEQRES 10 A 272 TYR LEU ALA LEU ASN GLU SER THR VAL LYS SER SER GLY
SEQRES 11 A 272 GLY PRO PHE VAL VAL ASP VAL VAL ILE ASN ASP ILE HIS
SEQRES 12 A 272 PHE GLU ARG PHE ARG GLY ASP GLY LEU CYS MET SER THR
SEQRES 13 A 272 PRO SER GLY THR THR ALA TYR ASN LYS SER LEU GLY GLY
SEQRES 14 A 272 ALA LEU MET HIS PRO SER ILE GLU ALA MET GLN LEU THR
SEQRES 15 A 272 GLU MET ALA SER ILE ASN ASN ARG VAL TYR ARG THR ILE
SEQRES 16 A 272 GLY SER PRO LEU VAL PHE PRO LYS HIS HIS VAL VAL SER
SEQRES 17 A 272 LEU GLN PRO VAL ASN ASP LYS ASP PHE GLN ILE SER VAL
SEQRES 18 A 272 ASP HIS LEU SER ILE LEU HIS ARG ASP VAL GLN GLU ILE
SEQRES 19 A 272 ARG TYR GLU VAL SER ALA LYS LYS ILE HIS PHE ALA ARG
SEQRES 20 A 272 PHE ARG SER PHE PRO PHE TRP ARG ARG VAL HIS ASP SER
SEQRES 21 A 272 PHE ILE GLU ASP LEU GLU HIS HIS HIS HIS HIS HIS
HET CIT A 301 13
HET K1Z A 302 45
HETNAM CIT CITRIC ACID
HETNAM K1Z [(2~{R},3~{R},4~{R},5~{R})-2-[8-[3-[[(2~{R},3~{S},
HETNAM 2 K1Z 4~{R},5~{R})-5-(6-AMINOPURIN-9-YL)-3,4-BIS(OXIDANYL)
HETNAM 3 K1Z OXOLAN-2-YL]METHOXY]PROP-1-YNYL]-6-AZANYL-PURIN-9-YL]-
HETNAM 4 K1Z 5-(HYDROXYMETHYL)-4-OXIDANYL-OXOLAN-3-YL] DIHYDROGEN
HETNAM 5 K1Z PHOSPHATE
FORMUL 2 CIT C6 H8 O7
FORMUL 3 K1Z C23 H27 N10 O11 P
FORMUL 4 HOH *74(H2 O)
HELIX 1 AA1 ASP A 10 GLY A 25 1 16
HELIX 2 AA2 GLY A 44 TYR A 55 1 12
HELIX 3 AA3 ARG A 58 ILE A 62 5 5
HELIX 4 AA4 ARG A 79 ALA A 81 5 3
HELIX 5 AA5 GLU A 82 GLY A 93 1 12
HELIX 6 AA6 PRO A 157 THR A 161 5 5
HELIX 7 AA7 ALA A 162 LEU A 167 1 6
HELIX 8 AA8 PRO A 252 ILE A 262 1 11
SHEET 1 AA1 4 GLU A 30 TYR A 31 0
SHEET 2 AA1 4 LYS A 2 SER A 7 1 N TYR A 3 O GLU A 30
SHEET 3 AA1 4 ILE A 38 GLY A 43 1 O ILE A 40 N THR A 6
SHEET 4 AA1 4 ALA A 63 HIS A 68 1 O ILE A 67 N SER A 41
SHEET 1 AA2 6 ALA A 116 ALA A 120 0
SHEET 2 AA2 6 GLN A 96 LYS A 108 -1 N VAL A 107 O ALA A 116
SHEET 3 AA2 6 GLU A 233 ARG A 247 -1 O ARG A 247 N GLN A 96
SHEET 4 AA2 6 VAL A 207 PRO A 211 -1 N LEU A 209 O ILE A 234
SHEET 5 AA2 6 PHE A 133 ILE A 139 -1 N VAL A 138 O SER A 208
SHEET 6 AA2 6 ILE A 142 GLY A 149 -1 O GLU A 145 N VAL A 137
SHEET 1 AA3 6 LEU A 199 PRO A 202 0
SHEET 2 AA3 6 ALA A 178 MET A 184 -1 N LEU A 181 O LEU A 199
SHEET 3 AA3 6 GLY A 151 SER A 155 -1 N SER A 155 O GLN A 180
SHEET 4 AA3 6 GLU A 123 SER A 128 -1 N SER A 124 O MET A 154
SHEET 5 AA3 6 PHE A 217 VAL A 221 -1 O GLN A 218 N LYS A 127
SHEET 6 AA3 6 LEU A 224 HIS A 228 -1 O LEU A 224 N VAL A 221
SITE 1 AC1 10 VAL A 98 TYR A 100 HIS A 173 ARG A 247
SITE 2 AC1 10 PHE A 251 PRO A 252 PHE A 253 ARG A 256
SITE 3 AC1 10 HOH A 413 HOH A 458
SITE 1 AC2 22 GLY A 44 ASP A 45 GLY A 46 LEU A 49
SITE 2 AC2 22 HIS A 71 PHE A 74 TYR A 75 ASN A 122
SITE 3 AC2 22 GLU A 123 ASP A 150 SER A 158 THR A 161
SITE 4 AC2 22 ALA A 162 TYR A 163 SER A 166 ALA A 185
SITE 5 AC2 22 ILE A 187 HOH A 410 HOH A 434 HOH A 448
SITE 6 AC2 22 HOH A 449 HOH A 450
CRYST1 63.080 75.220 118.280 90.00 90.00 90.00 I 2 2 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.015853 0.000000 0.000000 0.00000
SCALE2 0.000000 0.013294 0.000000 0.00000
SCALE3 0.000000 0.000000 0.008455 0.00000