HEADER SUGAR BINDING PROTEIN 17-APR-19 6RGW TITLE PHOTORHABDUS ASYMBIOTICA LECTIN PHL IN COMPLEX WITH O-METHYLATED PGL- TITLE 2 1-DERIVED DISACCHARIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LECTIN PHL; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHOTORHABDUS ASYMBIOTICA; SOURCE 3 ORGANISM_TAXID: 291112; SOURCE 4 GENE: PAU_00698; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: TUNER(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET25-B KEYWDS LECTIN, PHOTORHABDUS, O-METHYLATED SACCHARIDE, PGL-1, BETA-PROPELLER, KEYWDS 2 SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.HOUSER,E.FUJDIAROVA,G.JANCARIKOVA,M.WIMMEROVA REVDAT 5 16-OCT-24 6RGW 1 REMARK REVDAT 4 24-JAN-24 6RGW 1 REMARK REVDAT 3 24-FEB-21 6RGW 1 JRNL HETSYN LINK REVDAT 2 29-JUL-20 6RGW 1 REMARK LINK SITE REVDAT 1 01-JUL-20 6RGW 0 JRNL AUTH E.FUJDIAROVA,J.HOUSER,P.DOBES,G.PAULIKOVA,N.KONDAKOV, JRNL AUTH 2 L.KONONOV,P.HYRSL,M.WIMMEROVA JRNL TITL HEPTABLADED BETA-PROPELLER LECTINS PLL2 AND PHL FROM JRNL TITL 2 PHOTORHABDUS SPP. RECOGNIZE O-METHYLATED SUGARS AND JRNL TITL 3 INFLUENCE THE HOST IMMUNE SYSTEM. JRNL REF FEBS J. V. 288 1343 2021 JRNL REFN ISSN 1742-464X JRNL PMID 32559333 JRNL DOI 10.1111/FEBS.15457 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 41752 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2209 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3050 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2940 REMARK 3 BIN FREE R VALUE SET COUNT : 155 REMARK 3 BIN FREE R VALUE : 0.3120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2654 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 111 REMARK 3 SOLVENT ATOMS : 266 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.89 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.44000 REMARK 3 B22 (A**2) : 0.44000 REMARK 3 B33 (A**2) : -1.43000 REMARK 3 B12 (A**2) : 0.22000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.105 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.101 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.077 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.505 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2873 ; 0.005 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2503 ; 0.001 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3943 ; 1.270 ; 1.665 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5772 ; 1.262 ; 1.631 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 349 ; 8.405 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 141 ;30.226 ;21.915 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 383 ;11.974 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;10.350 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 398 ; 0.050 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3188 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 643 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1381 ; 1.298 ; 3.016 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1380 ; 1.299 ; 3.015 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1726 ; 1.963 ; 4.520 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1727 ; 1.962 ; 4.521 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1491 ; 1.516 ; 3.255 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1492 ; 1.516 ; 3.256 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2215 ; 2.207 ; 4.824 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3335 ; 3.635 ;36.019 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3281 ; 3.475 ;35.643 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6RGW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-APR-19. REMARK 100 THE DEPOSITION ID IS D_1292101928. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44002 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 44.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.10 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.10 REMARK 200 R MERGE FOR SHELL (I) : 1.12800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.6.02 REMARK 200 STARTING MODEL: 5MXE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4M NACL, 100MM HEPES, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.88067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 75.76133 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 75.76133 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 37.88067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -37.88067 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 620 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 PRO A 3 REMARK 465 ILE A 4 REMARK 465 ASN A 5 REMARK 465 THR A 6 REMARK 465 SER A 7 REMARK 465 ASN A 8 REMARK 465 PRO A 9 REMARK 465 ASP A 10 REMARK 465 ASN A 11 REMARK 465 THR A 12 REMARK 465 ALA A 13 REMARK 465 SER A 14 REMARK 465 TYR A 15 REMARK 465 VAL A 16 REMARK 465 LYS A 17 REMARK 465 ASP A 18 REMARK 465 GLU A 19 REMARK 465 VAL A 20 REMARK 465 GLU A 21 REMARK 465 ILE A 22 REMARK 465 THR A 23 REMARK 465 SER A 24 REMARK 465 SER A 25 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 112 CG OD1 ND2 REMARK 470 SER A 350 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O5 K3Q A 403 O4 7CV A 404 2.08 REMARK 500 O5 K3Q A 401 O4 7CV A 402 2.15 REMARK 500 NH1 ARG A 58 O HOH A 501 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 75 -146.41 64.70 REMARK 500 ALA A 113 -142.18 -122.96 REMARK 500 ASN A 170 -149.98 64.97 REMARK 500 ASN A 218 -150.16 58.93 REMARK 500 ASN A 266 -151.29 67.09 REMARK 500 VAL A 301 -62.73 79.83 REMARK 500 ASN A 314 -147.29 66.73 REMARK 500 SER A 351 -145.14 -163.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 411 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 37 OD1 REMARK 620 2 THR A 38 O 80.0 REMARK 620 3 HOH A 536 O 92.8 107.5 REMARK 620 4 HOH A 713 O 89.6 165.0 83.5 REMARK 620 5 HOH A 732 O 177.9 98.3 88.8 91.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 410 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 284 OE2 REMARK 620 2 HOH A 605 O 91.6 REMARK 620 3 HOH A 734 O 118.3 58.4 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5MXE RELATED DB: PDB REMARK 900 SAME PROTEIN IN FREE FORM REMARK 900 RELATED ID: 6RGJ RELATED DB: PDB REMARK 900 SAME PROTEIN IN COMPLEX WITH D-GLUCOSE REMARK 900 RELATED ID: 6RGR RELATED DB: PDB REMARK 900 SAME PROTEIN IN COMPLEX WITH L-RHAMNOSE REMARK 900 RELATED ID: 6RGU RELATED DB: PDB REMARK 900 SAME PROTEIN IN COMPLEX WITH 3-O-METHYL-GLUCOSE DBREF 6RGW A 1 369 UNP C7BLE4 C7BLE4_PHOAA 1 369 SEQRES 1 A 369 MET GLN PRO ILE ASN THR SER ASN PRO ASP ASN THR ALA SEQRES 2 A 369 SER TYR VAL LYS ASP GLU VAL GLU ILE THR SER SER THR SEQRES 3 A 369 ILE ALA LEU SER GLU ILE VAL SER VAL VAL ASN THR SER SEQRES 4 A 369 ASP GLY ARG LEU GLU VAL PHE GLY VAL GLY THR ASP LYS SEQRES 5 A 369 ALA VAL TRP HIS ASN ARG GLN MET ALA PRO HIS THR GLY SEQRES 6 A 369 SER PRO TRP SER GLY TRP SER SER LEU LYS GLY GLN VAL SEQRES 7 A 369 THR SER LYS PRO VAL VAL TYR ILE ASN THR ASP GLY ARG SEQRES 8 A 369 LEU GLU VAL PHE ALA ARG GLY THR ASP ASN ALA LEU TRP SEQRES 9 A 369 HIS ILE TRP GLN THR ALA THR ASN ALA GLY TRP SER ASN SEQRES 10 A 369 TRP GLN SER LEU GLY GLY VAL ILE THR SER ASN PRO ALA SEQRES 11 A 369 ILE TYR ALA ASN THR ASP GLY ARG LEU GLU VAL PHE ALA SEQRES 12 A 369 ARG GLY ALA ASP ASN ALA LEU TRP HIS ILE SER GLN THR SEQRES 13 A 369 THR ALA HIS SER GLY PRO TRP SER SER TRP ALA SER LEU SEQRES 14 A 369 ASN GLY VAL ILE THR SER ASN PRO THR VAL HIS ILE ASN SEQRES 15 A 369 SER ASP GLY ARG LEU GLU VAL PHE ALA ARG GLY THR ASP SEQRES 16 A 369 ASN ALA LEU TRP HIS ILE TRP GLN THR ALA PRO ASP SER SEQRES 17 A 369 ASN LEU TRP SER SER TRP GLU SER LEU ASN GLY ILE ILE SEQRES 18 A 369 THR SER ASP PRO VAL VAL ILE ASP THR ALA ASP GLY ARG SEQRES 19 A 369 LEU GLU VAL PHE ALA ARG GLY ALA ASP ASN ALA LEU TRP SEQRES 20 A 369 HIS ILE TRP GLN THR ILE SER HIS SER GLY PRO TRP SER SEQRES 21 A 369 GLY TRP GLN SER LEU ASN GLY VAL ILE THR SER ALA PRO SEQRES 22 A 369 ALA VAL ALA LYS ASN CYS ASP ASN ARG LEU GLU ALA PHE SEQRES 23 A 369 ALA ARG GLY THR ASP ASN ALA LEU TRP HIS THR TRP GLN SEQRES 24 A 369 THR VAL SER HIS SER GLY PRO TRP SER SER TRP GLN SER SEQRES 25 A 369 LEU ASN GLY VAL ILE THR SER ALA PRO THR ALA VAL ARG SEQRES 26 A 369 ASP ALA ASP GLY ARG LEU GLU VAL PHE ALA ARG GLY THR SEQRES 27 A 369 ASP ASN ALA LEU TRP LEU THR TRP GLN THR ALA SER SER SEQRES 28 A 369 TRP SER PRO TRP ILE SER LEU GLY GLY VAL LEU ILE ASP SEQRES 29 A 369 ALA SER ALA ILE LYS HET K3Q A 401 13 HET 7CV A 402 13 HET K3Q A 403 13 HET 7CV A 404 12 HET K42 A 405 11 HET K3Q A 406 14 HET EDO A 407 4 HET K3Q A 408 14 HET K3Q A 409 14 HET NA A 410 1 HET NA A 411 1 HET CL A 412 1 HETNAM K3Q 3,6-O-DIMETHYL-D-GLUCOSE HETNAM 7CV 6-DEOXY-2,3-DI-O-METHYL-ALPHA-L-MANNOPYRANOSE HETNAM K42 4-(2-AZANYLETHOXY)PHENOL HETNAM EDO 1,2-ETHANEDIOL HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETSYN 7CV 6-DEOXY-2,3-DI-O-METHYL-ALPHA-L-MANNOSE; 6-DEOXY-2,3- HETSYN 2 7CV DI-O-METHYL-L-MANNOSE; 6-DEOXY-2,3-DI-O-METHYL-MANNOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 K3Q 5(C8 H16 O6) FORMUL 3 7CV 2(C8 H16 O5) FORMUL 6 K42 C8 H11 N O2 FORMUL 8 EDO C2 H6 O2 FORMUL 11 NA 2(NA 1+) FORMUL 13 CL CL 1- FORMUL 14 HOH *266(H2 O) SHEET 1 AA1 4 SER A 34 ASN A 37 0 SHEET 2 AA1 4 LEU A 43 GLY A 49 -1 O PHE A 46 N SER A 34 SHEET 3 AA1 4 VAL A 54 ARG A 58 -1 O ASN A 57 N VAL A 45 SHEET 4 AA1 4 SER A 72 LYS A 75 -1 O LEU A 74 N VAL A 54 SHEET 1 AA2 3 SER A 34 ASN A 37 0 SHEET 2 AA2 3 LEU A 43 GLY A 49 -1 O PHE A 46 N SER A 34 SHEET 3 AA2 3 LEU A 362 ILE A 363 -1 O ILE A 363 N VAL A 48 SHEET 1 AA3 4 VAL A 83 ILE A 86 0 SHEET 2 AA3 4 LEU A 92 ARG A 97 -1 O PHE A 95 N VAL A 83 SHEET 3 AA3 4 LEU A 103 TRP A 107 -1 O ILE A 106 N VAL A 94 SHEET 4 AA3 4 GLN A 119 SER A 120 -1 O GLN A 119 N HIS A 105 SHEET 1 AA4 4 ALA A 130 ALA A 133 0 SHEET 2 AA4 4 LEU A 139 ARG A 144 -1 O PHE A 142 N ALA A 130 SHEET 3 AA4 4 LEU A 150 THR A 157 -1 O ILE A 153 N VAL A 141 SHEET 4 AA4 4 SER A 160 TRP A 163 -1 O PRO A 162 N THR A 156 SHEET 1 AA5 4 ALA A 130 ALA A 133 0 SHEET 2 AA5 4 LEU A 139 ARG A 144 -1 O PHE A 142 N ALA A 130 SHEET 3 AA5 4 LEU A 150 THR A 157 -1 O ILE A 153 N VAL A 141 SHEET 4 AA5 4 ALA A 167 ASN A 170 -1 O LEU A 169 N LEU A 150 SHEET 1 AA6 4 THR A 178 ILE A 181 0 SHEET 2 AA6 4 LEU A 187 ARG A 192 -1 O PHE A 190 N THR A 178 SHEET 3 AA6 4 LEU A 198 TRP A 202 -1 O TRP A 199 N ALA A 191 SHEET 4 AA6 4 GLU A 215 SER A 216 -1 O GLU A 215 N HIS A 200 SHEET 1 AA7 4 VAL A 226 ASP A 229 0 SHEET 2 AA7 4 LEU A 235 ARG A 240 -1 O PHE A 238 N VAL A 226 SHEET 3 AA7 4 LEU A 246 ILE A 253 -1 O ILE A 249 N VAL A 237 SHEET 4 AA7 4 SER A 256 TRP A 259 -1 O PRO A 258 N THR A 252 SHEET 1 AA8 4 VAL A 226 ASP A 229 0 SHEET 2 AA8 4 LEU A 235 ARG A 240 -1 O PHE A 238 N VAL A 226 SHEET 3 AA8 4 LEU A 246 ILE A 253 -1 O ILE A 249 N VAL A 237 SHEET 4 AA8 4 GLN A 263 SER A 264 -1 O GLN A 263 N HIS A 248 SHEET 1 AA9 4 ALA A 274 LYS A 277 0 SHEET 2 AA9 4 LEU A 283 ARG A 288 -1 O PHE A 286 N ALA A 274 SHEET 3 AA9 4 LEU A 294 TRP A 298 -1 O THR A 297 N ALA A 285 SHEET 4 AA9 4 GLN A 311 SER A 312 -1 O GLN A 311 N HIS A 296 SHEET 1 AB1 4 THR A 322 ARG A 325 0 SHEET 2 AB1 4 LEU A 331 ARG A 336 -1 O GLU A 332 N VAL A 324 SHEET 3 AB1 4 LEU A 342 TRP A 346 -1 O THR A 345 N VAL A 333 SHEET 4 AB1 4 ILE A 356 SER A 357 -1 O ILE A 356 N LEU A 344 SSBOND 1 CYS A 279 CYS A 279 1555 5554 2.28 LINK C1 K3Q A 401 O4 7CV A 402 1555 1555 1.37 LINK C1 K3Q A 403 O4 7CV A 404 1555 1555 1.38 LINK C1 7CV A 404 O1 K42 A 405 1555 1555 1.38 LINK OD1 ASN A 37 NA NA A 411 1555 1555 2.44 LINK O THR A 38 NA NA A 411 1555 1555 2.49 LINK OE2 GLU A 284 NA NA A 410 1555 1555 2.71 LINK NA NA A 410 O HOH A 605 1555 1555 3.13 LINK NA NA A 410 O HOH A 734 1555 1555 2.52 LINK NA NA A 411 O HOH A 536 1555 5554 2.48 LINK NA NA A 411 O HOH A 713 1555 1555 2.31 LINK NA NA A 411 O HOH A 732 1555 1555 2.53 CISPEP 1 GLY A 161 PRO A 162 0 1.35 CISPEP 2 GLY A 257 PRO A 258 0 3.32 CRYST1 80.893 80.893 113.642 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012362 0.007137 0.000000 0.00000 SCALE2 0.000000 0.014274 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008800 0.00000