HEADER FLUORESCENT PROTEIN 19-APR-19 6RHF TITLE STRUCTURE OF CHLOROFLEXUS AGGREGANS CAGG_3753 LOV DOMAIN C85A VARIANT TITLE 2 (CAGFBFP) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MULTI-SENSOR HYBRID HISTIDINE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHLOROFLEXUS AGGREGANS (STRAIN MD-66 / DSM SOURCE 3 9485); SOURCE 4 ORGANISM_TAXID: 326427; SOURCE 5 STRAIN: MD-66 / DSM 9485; SOURCE 6 GENE: CAGG_3753; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LOV, FMN, PHOTORECEPTOR, FLUORESCENT PROTEIN, FLAVOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR V.V.NAZARENKO,A.REMEEVA,A.YUDENKO,K.KOVALEV,V.GORDELIY,I.GUSHCHIN REVDAT 4 15-MAY-24 6RHF 1 REMARK REVDAT 3 17-JUL-19 6RHF 1 JRNL REVDAT 2 05-JUN-19 6RHF 1 JRNL REVDAT 1 15-MAY-19 6RHF 0 JRNL AUTH V.V.NAZARENKO,A.REMEEVA,A.YUDENKO,K.KOVALEV,A.DUBENKO, JRNL AUTH 2 I.M.GONCHAROV,P.KUZMICHEV,A.V.ROGACHEV,P.BUSLAEV, JRNL AUTH 3 V.BORSHCHEVSKIY,A.MISHIN,G.V.DHOKE,U.SCHWANEBERG,M.D.DAVARI, JRNL AUTH 4 K.E.JAEGER,U.KRAUSS,V.GORDELIY,I.GUSHCHIN JRNL TITL A THERMOSTABLE FLAVIN-BASED FLUORESCENT PROTEIN FROM JRNL TITL 2 CHLOROFLEXUS AGGREGANS: A FRAMEWORK FOR ULTRA-HIGH JRNL TITL 3 RESOLUTION STRUCTURAL STUDIES. JRNL REF PHOTOCHEM. PHOTOBIOL. SCI. V. 18 1793 2019 JRNL REFN ISSN 1474-9092 JRNL PMID 31116222 JRNL DOI 10.1039/C9PP00067D REMARK 2 REMARK 2 RESOLUTION. 1.07 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.07 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 97254 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.126 REMARK 3 R VALUE (WORKING SET) : 0.125 REMARK 3 FREE R VALUE : 0.148 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 5195 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.07 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6972 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.11 REMARK 3 BIN R VALUE (WORKING SET) : 0.2950 REMARK 3 BIN FREE R VALUE SET COUNT : 398 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1607 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 80 REMARK 3 SOLVENT ATOMS : 302 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.19000 REMARK 3 B33 (A**2) : -0.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.023 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.024 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.020 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.962 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.985 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.978 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1942 ; 0.021 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1846 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2695 ; 2.044 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4241 ; 1.011 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 272 ; 6.788 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 100 ;34.362 ;23.800 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 302 ;10.333 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;20.221 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 304 ; 0.137 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2311 ; 0.014 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 476 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3788 ; 5.487 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 69 ;34.542 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3966 ;13.720 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6RHF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-APR-19. REMARK 100 THE DEPOSITION ID IS D_1292101964. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9724 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.11 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 102522 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.070 REMARK 200 RESOLUTION RANGE LOW (A) : 48.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.07 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 2.06000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM AMMONIUM CITRATE DIBASIC, 20% REMARK 280 (W/V) PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 26.96700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.02200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.96700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.02200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 428 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 439 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 47 REMARK 465 HIS A 154 REMARK 465 HIS A 155 REMARK 465 HIS A 156 REMARK 465 HIS A 157 REMARK 465 HIS A 158 REMARK 465 HIS A 159 REMARK 465 MET B 47 REMARK 465 ALA B 153 REMARK 465 HIS B 154 REMARK 465 HIS B 155 REMARK 465 HIS B 156 REMARK 465 HIS B 157 REMARK 465 HIS B 158 REMARK 465 HIS B 159 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3P FMN A 201 O HOH A 301 1.27 REMARK 500 O3P FMN B 201 O HOH B 301 1.54 REMARK 500 O HOH A 419 O HOH A 443 1.69 REMARK 500 NH1 ARG B 119 O HOH B 302 1.87 REMARK 500 O ALA A 58 O HOH A 303 1.99 REMARK 500 OD2 ASP A 59 O HOH A 304 2.01 REMARK 500 O ALA A 58 O HOH A 305 2.01 REMARK 500 O HOH A 346 O HOH A 369 2.08 REMARK 500 OD2 ASP A 55 O HOH A 306 2.14 REMARK 500 NH2 ARG A 119 O HOH A 307 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLN A 92 O HOH A 375 4554 1.67 REMARK 500 O HOH A 308 O HOH B 362 4554 2.06 REMARK 500 OE1 GLU B 103 O HOH B 404 2455 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN B 128 CD GLN B 128 NE2 0.189 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 59 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP A 59 CB - CG - OD2 ANGL. DEV. = -6.9 DEGREES REMARK 500 ARG A 67 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 67 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 109 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 ASP A 121 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG B 102 NE - CZ - NH1 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG B 102 NE - CZ - NH2 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG B 109 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 119 NE - CZ - NH2 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG B 119 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 58 -121.87 47.58 REMARK 500 ASP A 59 40.91 -106.24 REMARK 500 ALA B 58 -125.93 50.97 REMARK 500 ALA B 58 53.43 39.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLN B 128 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLN B 148 -17.76 REMARK 500 GLN B 148 12.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 458 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH B 444 DISTANCE = 6.79 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 203 DBREF 6RHF A 47 153 UNP B8GAY9 B8GAY9_CHLAD 47 153 DBREF 6RHF B 47 153 UNP B8GAY9 B8GAY9_CHLAD 47 153 SEQADV 6RHF ALA A 85 UNP B8GAY9 CYS 85 VARIANT SEQADV 6RHF HIS A 154 UNP B8GAY9 EXPRESSION TAG SEQADV 6RHF HIS A 155 UNP B8GAY9 EXPRESSION TAG SEQADV 6RHF HIS A 156 UNP B8GAY9 EXPRESSION TAG SEQADV 6RHF HIS A 157 UNP B8GAY9 EXPRESSION TAG SEQADV 6RHF HIS A 158 UNP B8GAY9 EXPRESSION TAG SEQADV 6RHF HIS A 159 UNP B8GAY9 EXPRESSION TAG SEQADV 6RHF ALA B 85 UNP B8GAY9 CYS 85 VARIANT SEQADV 6RHF HIS B 154 UNP B8GAY9 EXPRESSION TAG SEQADV 6RHF HIS B 155 UNP B8GAY9 EXPRESSION TAG SEQADV 6RHF HIS B 156 UNP B8GAY9 EXPRESSION TAG SEQADV 6RHF HIS B 157 UNP B8GAY9 EXPRESSION TAG SEQADV 6RHF HIS B 158 UNP B8GAY9 EXPRESSION TAG SEQADV 6RHF HIS B 159 UNP B8GAY9 EXPRESSION TAG SEQRES 1 A 113 MET ALA SER GLY MET ILE VAL THR ASP ALA GLY ALA ASP SEQRES 2 A 113 GLN PRO ILE VAL PHE VAL ASN ARG ALA PHE SER THR ILE SEQRES 3 A 113 THR GLY TYR ALA PRO ASN GLU VAL LEU GLY ARG ASN ALA SEQRES 4 A 113 ARG PHE LEU GLN GLY PRO GLN THR ASP ALA ALA THR VAL SEQRES 5 A 113 ALA ARG LEU ARG GLU ALA ILE ALA ALA ALA ARG PRO ILE SEQRES 6 A 113 GLN GLU ARG ILE LEU ASN TYR ARG LYS ASP GLY GLN PRO SEQRES 7 A 113 PHE TRP ASN GLN LEU SER ILE SER PRO VAL ARG ASP GLU SEQRES 8 A 113 THR GLY ASN VAL VAL ALA PHE VAL GLY VAL GLN THR ASP SEQRES 9 A 113 VAL THR ALA HIS HIS HIS HIS HIS HIS SEQRES 1 B 113 MET ALA SER GLY MET ILE VAL THR ASP ALA GLY ALA ASP SEQRES 2 B 113 GLN PRO ILE VAL PHE VAL ASN ARG ALA PHE SER THR ILE SEQRES 3 B 113 THR GLY TYR ALA PRO ASN GLU VAL LEU GLY ARG ASN ALA SEQRES 4 B 113 ARG PHE LEU GLN GLY PRO GLN THR ASP ALA ALA THR VAL SEQRES 5 B 113 ALA ARG LEU ARG GLU ALA ILE ALA ALA ALA ARG PRO ILE SEQRES 6 B 113 GLN GLU ARG ILE LEU ASN TYR ARG LYS ASP GLY GLN PRO SEQRES 7 B 113 PHE TRP ASN GLN LEU SER ILE SER PRO VAL ARG ASP GLU SEQRES 8 B 113 THR GLY ASN VAL VAL ALA PHE VAL GLY VAL GLN THR ASP SEQRES 9 B 113 VAL THR ALA HIS HIS HIS HIS HIS HIS HET FMN A 201 31 HET GOL A 202 12 HET FMN B 201 31 HET GOL B 202 6 HET GOL B 203 6 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM GOL GLYCEROL HETSYN FMN RIBOFLAVIN MONOPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 FMN 2(C17 H21 N4 O9 P) FORMUL 4 GOL 3(C3 H8 O3) FORMUL 8 HOH *302(H2 O) HELIX 1 AA1 ASN A 66 GLY A 74 1 9 HELIX 2 AA2 ALA A 76 LEU A 81 1 6 HELIX 3 AA3 ASN A 84 GLN A 89 5 6 HELIX 4 AA4 ASP A 94 ALA A 107 1 14 HELIX 5 AA5 ASN B 66 GLY B 74 1 9 HELIX 6 AA6 ALA B 76 LEU B 81 1 6 HELIX 7 AA7 ASN B 84 GLN B 89 5 6 HELIX 8 AA8 ASP B 94 ALA B 108 1 15 SHEET 1 AA1 5 ILE A 62 VAL A 65 0 SHEET 2 AA1 5 GLY A 50 ASP A 55 -1 N VAL A 53 O VAL A 63 SHEET 3 AA1 5 VAL A 141 ASP A 150 -1 O GLY A 146 N ILE A 52 SHEET 4 AA1 5 PRO A 124 ARG A 135 -1 N GLN A 128 O THR A 149 SHEET 5 AA1 5 ILE A 111 TYR A 118 -1 N ASN A 117 O PHE A 125 SHEET 1 AA2 5 ILE B 62 VAL B 65 0 SHEET 2 AA2 5 GLY B 50 ASP B 55 -1 N VAL B 53 O VAL B 63 SHEET 3 AA2 5 VAL B 141 ASP B 150 -1 O GLY B 146 N ILE B 52 SHEET 4 AA2 5 PRO B 124 ARG B 135 -1 N VAL B 134 O VAL B 142 SHEET 5 AA2 5 ILE B 111 TYR B 118 -1 N ASN B 117 O PHE B 125 SITE 1 AC1 24 ILE A 52 THR A 54 ASN A 84 ALA A 85 SITE 2 AC1 24 ARG A 86 LEU A 88 GLN A 89 VAL A 98 SITE 3 AC1 24 ARG A 102 ILE A 105 ASN A 117 ASN A 127 SITE 4 AC1 24 LEU A 129 ILE A 131 PHE A 144 VAL A 145 SITE 5 AC1 24 GLY A 146 GLN A 148 HOH A 301 HOH A 331 SITE 6 AC1 24 HOH A 364 HOH A 372 HOH A 386 HOH B 324 SITE 1 AC2 11 SER A 130 ILE A 131 SER A 132 VAL A 145 SITE 2 AC2 11 HOH A 302 HOH A 315 HOH A 325 HOH A 370 SITE 3 AC2 11 VAL B 134 ARG B 135 HOH B 392 SITE 1 AC3 25 ALA A 58 HOH A 303 HOH A 417 ILE B 52 SITE 2 AC3 25 THR B 54 ASN B 84 ALA B 85 ARG B 86 SITE 3 AC3 25 LEU B 88 GLN B 89 VAL B 98 ARG B 102 SITE 4 AC3 25 ILE B 105 ASN B 117 ASN B 127 LEU B 129 SITE 5 AC3 25 ILE B 131 PHE B 144 VAL B 145 GLY B 146 SITE 6 AC3 25 GLN B 148 HOH B 301 HOH B 319 HOH B 357 SITE 7 AC3 25 HOH B 372 SITE 1 AC4 9 PRO A 91 HOH A 335 HOH A 338 PHE B 64 SITE 2 AC4 9 VAL B 65 ASN B 66 ARG B 67 HOH B 321 SITE 3 AC4 9 HOH B 351 SITE 1 AC5 9 GLU A 103 ARG A 109 ASP B 94 ALA B 96 SITE 2 AC5 9 THR B 97 ARG B 100 HOH B 316 HOH B 340 SITE 3 AC5 9 HOH B 386 CRYST1 53.934 110.044 38.945 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018541 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009087 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025677 0.00000