HEADER OXIDOREDUCTASE 22-APR-19 6RHT TITLE STRUCTURE OF PEDIOCOCCUS ACIDILACTICI PUTATIVE LACTATE OXIDASE WT TITLE 2 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE L-LACTATE OXIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.1.99.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PEDIOCOCCUS ACIDILACTICI DSM 20284; SOURCE 3 ORGANISM_TAXID: 862514; SOURCE 4 GENE: LCTO, HMPREF0623_0568; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS FMN ALPHA-HYDROXY ACID TIM BARREL, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.ASHOK,M.M.MAKSIMAINEN,P.KILPELAINEN,L.LEHTIO REVDAT 3 24-JAN-24 6RHT 1 REMARK REVDAT 2 04-MAR-20 6RHT 1 JRNL REVDAT 1 12-FEB-20 6RHT 0 JRNL AUTH Y.ASHOK,M.M.MAKSIMAINEN,T.KALLIO,P.KILPELAINEN,L.LEHTIO JRNL TITL FMN-DEPENDENT OLIGOMERIZATION OF PUTATIVE LACTATE OXIDASE JRNL TITL 2 FROM PEDIOCOCCUS ACIDILACTICI. JRNL REF PLOS ONE V. 15 23870 2020 JRNL REFN ESSN 1932-6203 JRNL PMID 32092083 JRNL DOI 10.1371/JOURNAL.PONE.0223870 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 91.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 43658 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2311 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3178 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.3070 REMARK 3 BIN FREE R VALUE SET COUNT : 161 REMARK 3 BIN FREE R VALUE : 0.3560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2787 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 61 REMARK 3 SOLVENT ATOMS : 122 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.97000 REMARK 3 B22 (A**2) : -1.97000 REMARK 3 B33 (A**2) : 3.93000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.115 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.113 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.116 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.419 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3005 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2812 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4067 ; 1.628 ; 1.651 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6547 ; 1.370 ; 1.584 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 387 ; 6.742 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 146 ;35.935 ;24.247 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 505 ;14.828 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;18.518 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 399 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3382 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 567 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1527 ; 1.959 ; 2.754 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1526 ; 1.954 ; 2.752 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1906 ; 2.823 ; 4.117 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1907 ; 2.827 ; 4.119 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1478 ; 3.435 ; 3.213 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1479 ; 3.434 ; 3.215 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2157 ; 5.245 ; 4.627 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3351 ; 6.686 ;32.436 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3338 ; 6.653 ;32.404 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6RHT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-APR-19. REMARK 100 THE DEPOSITION ID IS D_1292101948. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-SEP-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.980 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45969 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 95.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2J6X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.1 M SODIUM MALONATE, 0.1 M HEPES PH REMARK 280 7.0, 0.5% JEFFAMINE ED-2003, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 67.62000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 67.62000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 62.42000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 67.62000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 67.62000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 62.42000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 67.62000 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 67.62000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 62.42000 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 67.62000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 67.62000 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 62.42000 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 67.62000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 67.62000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 62.42000 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 67.62000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 67.62000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 62.42000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 67.62000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 67.62000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 62.42000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 67.62000 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 67.62000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 62.42000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 49060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 270.48000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 135.24000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 135.24000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 -135.24000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 135.24000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 145 O1 GOL A 402 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 25 CD GLU A 25 OE2 0.072 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 45 -124.37 52.30 REMARK 500 LYS A 72 75.26 51.50 REMARK 500 TYR A 123 40.47 -96.62 REMARK 500 GLN A 268 -104.46 -116.37 REMARK 500 LYS A 288 17.45 59.10 REMARK 500 SER A 296 97.83 115.09 REMARK 500 ARG A 299 -30.08 -131.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY A 207 -13.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 406 DBREF 6RHT A 1 369 UNP E0NE46 E0NE46_PEDAC 1 369 SEQADV 6RHT SER A 0 UNP E0NE46 EXPRESSION TAG SEQRES 1 A 370 SER MET THR MET ILE ASN GLY TYR GLU GLN SER ASP ARG SEQRES 2 A 370 GLU GLU LYS ILE ASP ILE LEU ASN LEU GLU SER LEU GLU SEQRES 3 A 370 LYS GLN ALA GLU GLU ILE ILE PRO ALA GLY GLY PHE GLY SEQRES 4 A 370 TYR ILE ALA GLY GLY SER GLU ASP GLU TRP THR LEU LYS SEQRES 5 A 370 GLN ASN ARG MET ALA PHE HIS HIS ARG GLN ILE ALA PRO SEQRES 6 A 370 LYS ALA LEU SER GLY ILE GLU LYS PRO GLU LEU ASN THR SEQRES 7 A 370 GLU ILE PHE GLY ILE PRO LEU ASN THR PRO VAL MET MET SEQRES 8 A 370 ALA PRO ALA ALA ALA GLN GLY LEU ALA HIS SER GLN GLY SEQRES 9 A 370 GLU LYS ASP THR ALA ARG GLY LEU ALA ALA VAL GLY GLY SEQRES 10 A 370 LEU MET ALA GLN SER THR TYR SER SER VAL SER ILE ALA SEQRES 11 A 370 GLU THR ALA ALA ALA GLY GLY ASP ALA PRO GLN PHE PHE SEQRES 12 A 370 GLN LEU TYR MET SER LYS ASP TRP ASN PHE ASN GLU SER SEQRES 13 A 370 LEU LEU ASP GLU ALA LYS LYS ALA ASN VAL LYS ALA ILE SEQRES 14 A 370 ILE LEU THR VAL ASP ALA THR VAL ASP GLY TYR ARG GLU SEQRES 15 A 370 ALA ASP ILE LYS ASN LYS PHE THR PHE PRO LEU PRO MET SEQRES 16 A 370 ALA ASN LEU ILE LYS PHE SER GLU GLY ASN GLY GLN GLY SEQRES 17 A 370 LYS GLY ILE GLU GLU ILE TYR ALA SER ALA ALA GLN ASN SEQRES 18 A 370 ILE ARG PRO GLU ASP VAL LYS ARG ILE ALA ASP TYR THR SEQRES 19 A 370 ASN LEU PRO VAL ILE VAL LYS GLY ILE GLN THR PRO GLU SEQRES 20 A 370 ASP ALA ILE ARG ALA ILE ASP ALA GLY ALA ALA GLY ILE SEQRES 21 A 370 TYR VAL SER ASN HIS GLY GLY ARG GLN LEU ASN GLY GLY SEQRES 22 A 370 PRO ALA SER PHE ASP VAL LEU GLU ASP ILE ALA THR ALA SEQRES 23 A 370 VAL ASN LYS GLN VAL PRO ILE ILE PHE ASP SER GLY VAL SEQRES 24 A 370 ARG ARG GLY SER ASP VAL PHE LYS ALA LEU ALA SER GLY SEQRES 25 A 370 ALA ASP LEU VAL ALA LEU GLY ARG PRO VAL ILE TYR GLY SEQRES 26 A 370 LEU ALA LEU GLY GLY ALA LYS GLY VAL GLN SER VAL PHE SEQRES 27 A 370 GLU HIS LEU ASN HIS GLU LEU GLU ILE VAL MET GLN LEU SEQRES 28 A 370 ALA GLY THR LYS THR ILE GLU ASP VAL LYS ASN ASN SER SEQRES 29 A 370 LEU LEU ASN ILE LYS TYR HET FMN A 401 31 HET GOL A 402 6 HET GOL A 403 6 HET GOL A 404 6 HET GOL A 405 6 HET GOL A 406 6 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM GOL GLYCEROL HETSYN FMN RIBOFLAVIN MONOPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 FMN C17 H21 N4 O9 P FORMUL 3 GOL 5(C3 H8 O3) FORMUL 8 HOH *122(H2 O) HELIX 1 AA1 SER A 23 GLU A 30 1 8 HELIX 2 AA2 PRO A 33 GLY A 42 1 10 HELIX 3 AA3 GLU A 47 ALA A 56 1 10 HELIX 4 AA4 PHE A 57 ARG A 60 5 4 HELIX 5 AA5 ALA A 95 ALA A 99 5 5 HELIX 6 AA6 GLY A 103 GLY A 115 1 13 HELIX 7 AA7 SER A 127 GLY A 136 1 10 HELIX 8 AA8 ASP A 149 ALA A 163 1 15 HELIX 9 AA9 ARG A 180 LYS A 187 1 8 HELIX 10 AB1 MET A 194 GLY A 203 1 10 HELIX 11 AB2 GLY A 209 ALA A 215 1 7 HELIX 12 AB3 ARG A 222 ASN A 234 1 13 HELIX 13 AB4 THR A 244 ALA A 254 1 11 HELIX 14 AB5 ASN A 263 ARG A 267 5 5 HELIX 15 AB6 SER A 275 ASN A 287 1 13 HELIX 16 AB7 ARG A 300 SER A 310 1 11 HELIX 17 AB8 GLY A 318 GLY A 352 1 35 HELIX 18 AB9 THR A 355 ASN A 361 1 7 SHEET 1 AA1 2 THR A 2 ILE A 4 0 SHEET 2 AA1 2 TYR A 7 GLN A 9 -1 O GLN A 9 N THR A 2 SHEET 1 AA2 2 THR A 77 ILE A 79 0 SHEET 2 AA2 2 ILE A 82 LEU A 84 -1 O LEU A 84 N THR A 77 SHEET 1 AA3 9 VAL A 88 MET A 90 0 SHEET 2 AA3 9 MET A 118 SER A 121 1 O ALA A 119 N MET A 90 SHEET 3 AA3 9 GLN A 140 LEU A 144 1 O GLN A 143 N GLN A 120 SHEET 4 AA3 9 ILE A 168 THR A 171 1 O ILE A 169 N LEU A 144 SHEET 5 AA3 9 VAL A 237 ILE A 242 1 O ILE A 238 N LEU A 170 SHEET 6 AA3 9 GLY A 258 VAL A 261 1 O TYR A 260 N VAL A 239 SHEET 7 AA3 9 ILE A 292 PHE A 294 1 O ILE A 293 N ILE A 259 SHEET 8 AA3 9 LEU A 314 LEU A 317 1 O ALA A 316 N PHE A 294 SHEET 9 AA3 9 VAL A 88 MET A 90 1 N MET A 89 O VAL A 315 SITE 1 AC1 23 ILE A 40 ALA A 91 PRO A 92 ALA A 93 SITE 2 AC1 23 ALA A 94 SER A 121 GLN A 143 TYR A 145 SITE 3 AC1 23 THR A 171 LYS A 240 SER A 262 HIS A 264 SITE 4 AC1 23 GLY A 265 ARG A 267 ASP A 295 SER A 296 SITE 5 AC1 23 GLY A 297 ARG A 299 GLY A 318 ARG A 319 SITE 6 AC1 23 GOL A 402 HOH A 504 HOH A 579 SITE 1 AC2 7 TYR A 39 TYR A 145 ARG A 180 TYR A 214 SITE 2 AC2 7 HIS A 264 ARG A 267 FMN A 401 SITE 1 AC3 7 HIS A 59 ARG A 60 PHE A 276 ASP A 277 SITE 2 AC3 7 LEU A 279 GLU A 280 HOH A 587 SITE 1 AC4 6 ILE A 249 ASP A 253 GLN A 289 ASP A 358 SITE 2 AC4 6 ASN A 361 HOH A 557 SITE 1 AC5 6 THR A 284 ALA A 309 LYS A 360 ASN A 361 SITE 2 AC5 6 ASN A 362 HOH A 591 SITE 1 AC6 4 LYS A 288 VAL A 290 PRO A 291 ASP A 313 CRYST1 135.240 135.240 124.840 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007394 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007394 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008010 0.00000