HEADER OXIDOREDUCTASE 24-APR-19 6RIH TITLE CRYSTAL STRUCTURE OF PHGDH IN COMPLEX WITH COMPOUND 9 COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-3-PHOSPHOGLYCERATE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN; COMPND 5 SYNONYM: 3-PGDH,2-OXOGLUTARATE REDUCTASE,MALATE DEHYDROGENASE; COMPND 6 EC: 1.1.1.95,1.1.1.399,1.1.1.37; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PHGDH, PGDH3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN-LIGAND COMPLEX, DEHYDROGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR G.BADER,B.WOLKERSTORFER,A.ZOEPHEL REVDAT 4 24-JAN-24 6RIH 1 REMARK REVDAT 3 25-SEP-19 6RIH 1 JRNL REVDAT 2 14-AUG-19 6RIH 1 JRNL REVDAT 1 07-AUG-19 6RIH 0 JRNL AUTH H.WEINSTABL,M.TREU,J.RINNENTHAL,S.K.ZAHN,P.ETTMAYER,G.BADER, JRNL AUTH 2 G.DAHMANN,D.KESSLER,K.RUMPEL,N.MISCHERIKOW,F.SAVARESE, JRNL AUTH 3 T.GERSTBERGER,M.MAYER,A.ZOEPHEL,R.SCHNITZER,W.SOMMERGRUBER, JRNL AUTH 4 P.MARTINELLI,H.ARNHOF,B.PERIC-SIMOV,K.S.HOFBAUER,G.GARAVEL, JRNL AUTH 5 Y.SCHERBANTIN,S.MITZNER,T.N.FETT,G.SCHOLZ,J.BRUCHHAUS, JRNL AUTH 6 M.BURKARD,R.KOUSEK,T.CIFTCI,B.SHARPS,A.SCHRENK,C.HARRER, JRNL AUTH 7 D.HAERING,B.WOLKERSTORFER,X.ZHANG,X.LV,A.DU,D.LI,Y.LI, JRNL AUTH 8 J.QUANT,M.PEARSON,D.B.MCCONNELL JRNL TITL INTRACELLULAR TRAPPING OF THE SELECTIVE PHOSPHOGLYCERATE JRNL TITL 2 DEHYDROGENASE (PHGDH) INHIBITORBI-4924DISRUPTS SERINE JRNL TITL 3 BIOSYNTHESIS. JRNL REF J.MED.CHEM. V. 62 7976 2019 JRNL REFN ISSN 0022-2623 JRNL PMID 31365252 JRNL DOI 10.1021/ACS.JMEDCHEM.9B00718 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.7 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 34428 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.890 REMARK 3 FREE R VALUE TEST SET COUNT : 1682 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 17 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.22 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 76.38 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2323 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.4103 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2219 REMARK 3 BIN R VALUE (WORKING SET) : 0.4080 REMARK 3 BIN FREE R VALUE : 0.4570 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.48 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 104 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4474 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 576 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.53450 REMARK 3 B22 (A**2) : -4.64240 REMARK 3 B33 (A**2) : 2.10790 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.16840 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.320 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.322 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.237 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.289 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.230 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.916 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.867 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4568 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6172 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1642 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 782 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4568 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 615 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5631 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.09 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.56 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.78 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 9.2697 -0.9352 66.2665 REMARK 3 T TENSOR REMARK 3 T11: -0.0482 T22: -0.1460 REMARK 3 T33: 0.2814 T12: 0.0117 REMARK 3 T13: -0.0602 T23: 0.0043 REMARK 3 L TENSOR REMARK 3 L11: 0.2570 L22: 0.5989 REMARK 3 L33: 0.6313 L12: -0.1866 REMARK 3 L13: -0.3130 L23: 0.3859 REMARK 3 S TENSOR REMARK 3 S11: 0.0061 S12: -0.0042 S13: -0.0786 REMARK 3 S21: -0.0727 S22: -0.0675 S23: 0.0944 REMARK 3 S31: -0.0146 S32: -0.0332 S33: 0.0614 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 2.7081 23.9187 87.8811 REMARK 3 T TENSOR REMARK 3 T11: -0.0546 T22: -0.1685 REMARK 3 T33: 0.2269 T12: 0.0250 REMARK 3 T13: -0.0446 T23: -0.0227 REMARK 3 L TENSOR REMARK 3 L11: 1.0786 L22: 0.9877 REMARK 3 L33: 0.4139 L12: -0.2348 REMARK 3 L13: -0.0411 L23: -0.1533 REMARK 3 S TENSOR REMARK 3 S11: -0.0757 S12: -0.1115 S13: 0.1592 REMARK 3 S21: 0.1447 S22: 0.0511 S23: 0.0083 REMARK 3 S31: -0.1423 S32: 0.0181 S33: 0.0246 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6RIH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-APR-19. REMARK 100 THE DEPOSITION ID IS D_1292101999. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : TRUNCATE REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.8 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35486 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 112.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.21100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2G76 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25 % PEG 8000, 0.1 M MES, 0.2M LITHIUM REMARK 280 SULPHATE, PH 6.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 56.02050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 MET A 2 REMARK 465 ALA A 3 REMARK 465 ASN A 4 REMARK 465 LYS A 307 REMARK 465 GLY A 308 REMARK 465 LYS A 309 REMARK 465 SER A 310 REMARK 465 LEU A 311 REMARK 465 THR A 312 REMARK 465 GLY A 313 REMARK 465 VAL A 314 REMARK 465 SER B 1 REMARK 465 MET B 2 REMARK 465 ALA B 3 REMARK 465 ASN B 4 REMARK 465 GLN B 23 REMARK 465 ASP B 24 REMARK 465 GLY B 25 REMARK 465 LEU B 44 REMARK 465 GLN B 45 REMARK 465 ASP B 46 REMARK 465 LYS B 307 REMARK 465 GLY B 308 REMARK 465 LYS B 309 REMARK 465 SER B 310 REMARK 465 LEU B 311 REMARK 465 THR B 312 REMARK 465 GLY B 313 REMARK 465 VAL B 314 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 6 -42.05 -130.24 REMARK 500 LEU A 14 -132.94 -126.36 REMARK 500 ARG A 53 -89.45 -110.58 REMARK 500 SER A 54 -29.84 -146.68 REMARK 500 ASP A 80 -83.76 -165.51 REMARK 500 PHE A 137 62.94 -104.35 REMARK 500 ALA A 234 -83.30 -101.27 REMARK 500 ARG B 6 106.56 59.94 REMARK 500 LYS B 7 113.83 161.99 REMARK 500 LEU B 27 -83.68 -138.96 REMARK 500 GLU B 39 -136.78 33.44 REMARK 500 ILE B 41 73.99 -6.65 REMARK 500 ARG B 53 -105.41 -112.64 REMARK 500 VAL B 79 46.96 -142.09 REMARK 500 LEU B 152 40.34 -105.82 REMARK 500 HIS B 205 34.63 -142.49 REMARK 500 ALA B 234 -84.77 -101.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 782 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH A 783 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH A 784 DISTANCE = 6.52 ANGSTROMS REMARK 525 HOH A 785 DISTANCE = 6.71 ANGSTROMS REMARK 525 HOH A 786 DISTANCE = 7.04 ANGSTROMS REMARK 525 HOH A 787 DISTANCE = 7.28 ANGSTROMS REMARK 525 HOH A 788 DISTANCE = 7.69 ANGSTROMS REMARK 525 HOH A 789 DISTANCE = 10.39 ANGSTROMS REMARK 525 HOH A 790 DISTANCE = 10.81 ANGSTROMS REMARK 525 HOH B 779 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH B 780 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH B 781 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH B 782 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH B 783 DISTANCE = 6.65 ANGSTROMS REMARK 525 HOH B 784 DISTANCE = 7.41 ANGSTROMS REMARK 525 HOH B 785 DISTANCE = 7.75 ANGSTROMS REMARK 525 HOH B 786 DISTANCE = 8.25 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K4T A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K4T B 402 DBREF 6RIH A 3 314 UNP O43175 SERA_HUMAN 4 315 DBREF 6RIH B 3 314 UNP O43175 SERA_HUMAN 4 315 SEQADV 6RIH SER A 1 UNP O43175 EXPRESSION TAG SEQADV 6RIH MET A 2 UNP O43175 EXPRESSION TAG SEQADV 6RIH SER B 1 UNP O43175 EXPRESSION TAG SEQADV 6RIH MET B 2 UNP O43175 EXPRESSION TAG SEQRES 1 A 314 SER MET ALA ASN LEU ARG LYS VAL LEU ILE SER ASP SER SEQRES 2 A 314 LEU ASP PRO CYS CYS ARG LYS ILE LEU GLN ASP GLY GLY SEQRES 3 A 314 LEU GLN VAL VAL GLU LYS GLN ASN LEU SER LYS GLU GLU SEQRES 4 A 314 LEU ILE ALA GLU LEU GLN ASP CYS GLU GLY LEU ILE VAL SEQRES 5 A 314 ARG SER ALA THR LYS VAL THR ALA ASP VAL ILE ASN ALA SEQRES 6 A 314 ALA GLU LYS LEU GLN VAL VAL GLY ARG ALA GLY THR GLY SEQRES 7 A 314 VAL ASP ASN VAL ASP LEU GLU ALA ALA THR ARG LYS GLY SEQRES 8 A 314 ILE LEU VAL MET ASN THR PRO ASN GLY ASN SER LEU SER SEQRES 9 A 314 ALA ALA GLU LEU THR CYS GLY MET ILE MET CYS LEU ALA SEQRES 10 A 314 ARG GLN ILE PRO GLN ALA THR ALA SER MET LYS ASP GLY SEQRES 11 A 314 LYS TRP GLU ARG LYS LYS PHE MET GLY THR GLU LEU ASN SEQRES 12 A 314 GLY LYS THR LEU GLY ILE LEU GLY LEU GLY ARG ILE GLY SEQRES 13 A 314 ARG GLU VAL ALA THR ARG MET GLN SER PHE GLY MET LYS SEQRES 14 A 314 THR ILE GLY TYR ASP PRO ILE ILE SER PRO GLU VAL SER SEQRES 15 A 314 ALA SER PHE GLY VAL GLN GLN LEU PRO LEU GLU GLU ILE SEQRES 16 A 314 TRP PRO LEU CYS ASP PHE ILE THR VAL HIS THR PRO LEU SEQRES 17 A 314 LEU PRO SER THR THR GLY LEU LEU ASN ASP ASN THR PHE SEQRES 18 A 314 ALA GLN CYS LYS LYS GLY VAL ARG VAL VAL ASN CYS ALA SEQRES 19 A 314 ARG GLY GLY ILE VAL ASP GLU GLY ALA LEU LEU ARG ALA SEQRES 20 A 314 LEU GLN SER GLY GLN CYS ALA GLY ALA ALA LEU ASP VAL SEQRES 21 A 314 PHE THR GLU GLU PRO PRO ARG ASP ARG ALA LEU VAL ASP SEQRES 22 A 314 HIS GLU ASN VAL ILE SER CYS PRO HIS LEU GLY ALA SER SEQRES 23 A 314 THR LYS GLU ALA GLN SER ARG CYS GLY GLU GLU ILE ALA SEQRES 24 A 314 VAL GLN PHE VAL ASP MET VAL LYS GLY LYS SER LEU THR SEQRES 25 A 314 GLY VAL SEQRES 1 B 314 SER MET ALA ASN LEU ARG LYS VAL LEU ILE SER ASP SER SEQRES 2 B 314 LEU ASP PRO CYS CYS ARG LYS ILE LEU GLN ASP GLY GLY SEQRES 3 B 314 LEU GLN VAL VAL GLU LYS GLN ASN LEU SER LYS GLU GLU SEQRES 4 B 314 LEU ILE ALA GLU LEU GLN ASP CYS GLU GLY LEU ILE VAL SEQRES 5 B 314 ARG SER ALA THR LYS VAL THR ALA ASP VAL ILE ASN ALA SEQRES 6 B 314 ALA GLU LYS LEU GLN VAL VAL GLY ARG ALA GLY THR GLY SEQRES 7 B 314 VAL ASP ASN VAL ASP LEU GLU ALA ALA THR ARG LYS GLY SEQRES 8 B 314 ILE LEU VAL MET ASN THR PRO ASN GLY ASN SER LEU SER SEQRES 9 B 314 ALA ALA GLU LEU THR CYS GLY MET ILE MET CYS LEU ALA SEQRES 10 B 314 ARG GLN ILE PRO GLN ALA THR ALA SER MET LYS ASP GLY SEQRES 11 B 314 LYS TRP GLU ARG LYS LYS PHE MET GLY THR GLU LEU ASN SEQRES 12 B 314 GLY LYS THR LEU GLY ILE LEU GLY LEU GLY ARG ILE GLY SEQRES 13 B 314 ARG GLU VAL ALA THR ARG MET GLN SER PHE GLY MET LYS SEQRES 14 B 314 THR ILE GLY TYR ASP PRO ILE ILE SER PRO GLU VAL SER SEQRES 15 B 314 ALA SER PHE GLY VAL GLN GLN LEU PRO LEU GLU GLU ILE SEQRES 16 B 314 TRP PRO LEU CYS ASP PHE ILE THR VAL HIS THR PRO LEU SEQRES 17 B 314 LEU PRO SER THR THR GLY LEU LEU ASN ASP ASN THR PHE SEQRES 18 B 314 ALA GLN CYS LYS LYS GLY VAL ARG VAL VAL ASN CYS ALA SEQRES 19 B 314 ARG GLY GLY ILE VAL ASP GLU GLY ALA LEU LEU ARG ALA SEQRES 20 B 314 LEU GLN SER GLY GLN CYS ALA GLY ALA ALA LEU ASP VAL SEQRES 21 B 314 PHE THR GLU GLU PRO PRO ARG ASP ARG ALA LEU VAL ASP SEQRES 22 B 314 HIS GLU ASN VAL ILE SER CYS PRO HIS LEU GLY ALA SER SEQRES 23 B 314 THR LYS GLU ALA GLN SER ARG CYS GLY GLU GLU ILE ALA SEQRES 24 B 314 VAL GLN PHE VAL ASP MET VAL LYS GLY LYS SER LEU THR SEQRES 25 B 314 GLY VAL HET K4T A 401 18 HET SO4 B 401 5 HET K4T B 402 18 HETNAM K4T ~{N}-CYCLOPROPYL-2-METHYL-5-PHENYL-PYRAZOLE-3- HETNAM 2 K4T CARBOXAMIDE HETNAM SO4 SULFATE ION FORMUL 3 K4T 2(C14 H15 N3 O) FORMUL 4 SO4 O4 S 2- FORMUL 6 HOH *576(H2 O) HELIX 1 AA1 PRO A 16 GLY A 25 1 10 HELIX 2 AA2 SER A 36 GLN A 45 1 10 HELIX 3 AA3 THR A 59 ALA A 66 1 8 HELIX 4 AA4 ASP A 83 LYS A 90 1 8 HELIX 5 AA5 THR A 97 GLN A 119 1 23 HELIX 6 AA6 GLN A 119 ASP A 129 1 11 HELIX 7 AA7 GLY A 153 SER A 165 1 13 HELIX 8 AA8 SER A 178 SER A 184 1 7 HELIX 9 AA9 PRO A 191 TRP A 196 1 6 HELIX 10 AB1 PRO A 197 CYS A 199 5 3 HELIX 11 AB2 ASN A 217 CYS A 224 1 8 HELIX 12 AB3 ASP A 240 GLY A 251 1 12 HELIX 13 AB4 THR A 287 ASP A 304 1 18 HELIX 14 AB5 PRO B 16 ILE B 21 1 6 HELIX 15 AB6 THR B 59 ALA B 66 1 8 HELIX 16 AB7 ASP B 83 LYS B 90 1 8 HELIX 17 AB8 ASN B 101 GLN B 119 1 19 HELIX 18 AB9 GLN B 119 ASP B 129 1 11 HELIX 19 AC1 GLY B 153 SER B 165 1 13 HELIX 20 AC2 SER B 178 SER B 184 1 7 HELIX 21 AC3 PRO B 191 TRP B 196 1 6 HELIX 22 AC4 PRO B 197 CYS B 199 5 3 HELIX 23 AC5 ASN B 217 CYS B 224 1 8 HELIX 24 AC6 ASP B 240 SER B 250 1 11 HELIX 25 AC7 ARG B 269 HIS B 274 1 6 HELIX 26 AC8 THR B 287 ASP B 304 1 18 SHEET 1 AA1 5 GLN A 28 GLU A 31 0 SHEET 2 AA1 5 LYS A 7 ILE A 10 1 N VAL A 8 O GLN A 28 SHEET 3 AA1 5 GLY A 49 VAL A 52 1 O ILE A 51 N LEU A 9 SHEET 4 AA1 5 VAL A 71 ARG A 74 1 O GLY A 73 N LEU A 50 SHEET 5 AA1 5 LEU A 93 MET A 95 1 O LEU A 93 N VAL A 72 SHEET 1 AA2 7 GLN A 188 GLN A 189 0 SHEET 2 AA2 7 LYS A 169 TYR A 173 1 N GLY A 172 O GLN A 188 SHEET 3 AA2 7 THR A 146 LEU A 150 1 N LEU A 147 O LYS A 169 SHEET 4 AA2 7 PHE A 201 VAL A 204 1 O PHE A 201 N GLY A 148 SHEET 5 AA2 7 VAL A 228 ASN A 232 1 O VAL A 231 N ILE A 202 SHEET 6 AA2 7 CYS A 253 LEU A 258 1 O ALA A 257 N ASN A 232 SHEET 7 AA2 7 VAL A 277 SER A 279 1 O ILE A 278 N LEU A 258 SHEET 1 AA3 5 VAL B 29 GLU B 31 0 SHEET 2 AA3 5 VAL B 8 ILE B 10 1 N ILE B 10 O VAL B 30 SHEET 3 AA3 5 GLY B 49 VAL B 52 1 O ILE B 51 N LEU B 9 SHEET 4 AA3 5 VAL B 71 ARG B 74 1 O GLY B 73 N LEU B 50 SHEET 5 AA3 5 LEU B 93 MET B 95 1 O MET B 95 N ARG B 74 SHEET 1 AA4 7 GLN B 188 GLN B 189 0 SHEET 2 AA4 7 LYS B 169 TYR B 173 1 N THR B 170 O GLN B 188 SHEET 3 AA4 7 THR B 146 LEU B 150 1 N LEU B 147 O LYS B 169 SHEET 4 AA4 7 PHE B 201 VAL B 204 1 O THR B 203 N GLY B 148 SHEET 5 AA4 7 VAL B 228 ASN B 232 1 O VAL B 231 N ILE B 202 SHEET 6 AA4 7 CYS B 253 LEU B 258 1 O ALA B 257 N ASN B 232 SHEET 7 AA4 7 VAL B 277 SER B 279 1 O ILE B 278 N ALA B 256 CISPEP 1 GLU A 264 PRO A 265 0 -0.84 CISPEP 2 GLU B 264 PRO B 265 0 -0.97 SITE 1 AC1 10 GLY A 153 TYR A 173 ASP A 174 PRO A 175 SITE 2 AC1 10 ILE A 176 ILE A 177 THR A 206 PRO A 207 SITE 3 AC1 10 LEU A 209 LEU A 215 SITE 1 AC2 8 ARG A 134 ARG B 53 SER B 54 ARG B 74 SITE 2 AC2 8 ALA B 285 HOH B 520 HOH B 523 HOH B 543 SITE 1 AC3 10 GLY B 151 GLY B 153 TYR B 173 ASP B 174 SITE 2 AC3 10 PRO B 175 ILE B 176 THR B 206 PRO B 207 SITE 3 AC3 10 THR B 212 LEU B 215 CRYST1 43.351 112.041 69.116 90.00 96.04 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023068 0.000000 0.002441 0.00000 SCALE2 0.000000 0.008925 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014549 0.00000