HEADER ANTIMICROBIAL PROTEIN 26-APR-19 6RJ7 TITLE CRYSTAL STRUCTURE OF THE 19F LABELLED OXA-48 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.5.2.6; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 GENE: BLA OXA-48, BLAOXA-48, KPE71T_00045; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS BETA LACTMASE, ANTIBIOTIC RESISTANCE, 19F LABELLING, ANTIMICROBIAL KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.BREM,C.LOHANS,C.SCHOFIELD REVDAT 3 24-JAN-24 6RJ7 1 REMARK REVDAT 2 25-SEP-19 6RJ7 1 JRNL REVDAT 1 31-JUL-19 6RJ7 0 JRNL AUTH E.VAN GROESEN,C.T.LOHANS,J.BREM,K.M.J.AERTKER, JRNL AUTH 2 T.D.W.CLARIDGE,C.J.SCHOFIELD JRNL TITL 19F NMR MONITORING OF REVERSIBLE PROTEIN POST-TRANSLATIONAL JRNL TITL 2 MODIFICATIONS: CLASS D BETA-LACTAMASE CARBAMYLATION AND JRNL TITL 3 INHIBITION. JRNL REF CHEMISTRY V. 25 11837 2019 JRNL REFN ISSN 0947-6539 JRNL PMID 31310409 JRNL DOI 10.1002/CHEM.201902529 REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.348 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 51170 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.817 REMARK 3 FREE R VALUE TEST SET COUNT : 2465 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 66.4565 - 4.5335 1.00 2819 134 0.1613 0.1926 REMARK 3 2 4.5335 - 3.5984 1.00 2711 157 0.1361 0.1664 REMARK 3 3 3.5984 - 3.1436 1.00 2743 119 0.1660 0.1949 REMARK 3 4 3.1436 - 2.8561 1.00 2736 128 0.1793 0.1916 REMARK 3 5 2.8561 - 2.6514 1.00 2687 165 0.1714 0.1898 REMARK 3 6 2.6514 - 2.4951 1.00 2683 159 0.1732 0.2280 REMARK 3 7 2.4951 - 2.3701 1.00 2719 145 0.1739 0.2069 REMARK 3 8 2.3701 - 2.2670 1.00 2697 146 0.1858 0.2331 REMARK 3 9 2.2670 - 2.1797 1.00 2697 130 0.1774 0.2475 REMARK 3 10 2.1797 - 2.1045 1.00 2706 113 0.1840 0.2259 REMARK 3 11 2.1045 - 2.0387 1.00 2723 113 0.1902 0.2371 REMARK 3 12 2.0387 - 1.9804 1.00 2701 144 0.1990 0.2380 REMARK 3 13 1.9804 - 1.9282 1.00 2680 119 0.2041 0.2498 REMARK 3 14 1.9282 - 1.8812 0.99 2659 144 0.2305 0.2715 REMARK 3 15 1.8812 - 1.8384 0.99 2641 147 0.2544 0.2822 REMARK 3 16 1.8384 - 1.7993 1.00 2707 138 0.2652 0.2898 REMARK 3 17 1.7993 - 1.7633 1.00 2672 140 0.2921 0.2810 REMARK 3 18 1.7633 - 1.7300 1.00 2724 124 0.3126 0.3569 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.206 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.193 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4055 REMARK 3 ANGLE : 0.911 5517 REMARK 3 CHIRALITY : 0.055 583 REMARK 3 PLANARITY : 0.005 712 REMARK 3 DIHEDRAL : 18.785 2367 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 24 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.3159 30.6790 25.7243 REMARK 3 T TENSOR REMARK 3 T11: 0.3524 T22: 0.3240 REMARK 3 T33: 0.3969 T12: 0.0011 REMARK 3 T13: 0.0385 T23: -0.1257 REMARK 3 L TENSOR REMARK 3 L11: 2.9863 L22: 4.3058 REMARK 3 L33: 4.9892 L12: 0.8196 REMARK 3 L13: -0.0411 L23: 0.4388 REMARK 3 S TENSOR REMARK 3 S11: -0.1539 S12: -0.3252 S13: 0.5038 REMARK 3 S21: 0.4970 S22: 0.0997 S23: -0.1240 REMARK 3 S31: -0.5050 S32: -0.1533 S33: -0.0281 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 39 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.9756 28.4485 17.8523 REMARK 3 T TENSOR REMARK 3 T11: 0.2530 T22: 0.2141 REMARK 3 T33: 0.2263 T12: 0.0031 REMARK 3 T13: 0.0127 T23: -0.0452 REMARK 3 L TENSOR REMARK 3 L11: 3.4265 L22: 2.9878 REMARK 3 L33: 1.4201 L12: 0.8702 REMARK 3 L13: 0.4782 L23: 0.5419 REMARK 3 S TENSOR REMARK 3 S11: -0.0648 S12: -0.2414 S13: 0.6176 REMARK 3 S21: 0.0250 S22: 0.0452 S23: 0.0515 REMARK 3 S31: -0.2540 S32: 0.0093 S33: 0.0351 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.4535 3.6718 9.9774 REMARK 3 T TENSOR REMARK 3 T11: 0.1798 T22: 0.2345 REMARK 3 T33: 0.2254 T12: 0.0111 REMARK 3 T13: 0.0219 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 1.2923 L22: 1.4162 REMARK 3 L33: 0.6895 L12: 0.0194 REMARK 3 L13: 0.3387 L23: -0.0555 REMARK 3 S TENSOR REMARK 3 S11: 0.0289 S12: 0.0634 S13: -0.1589 REMARK 3 S21: -0.0842 S22: 0.0318 S23: -0.1550 REMARK 3 S31: 0.0779 S32: 0.0356 S33: -0.0484 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 142 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.0594 14.8405 4.3316 REMARK 3 T TENSOR REMARK 3 T11: 0.2787 T22: 0.3592 REMARK 3 T33: 0.3150 T12: 0.0111 REMARK 3 T13: 0.1092 T23: 0.0862 REMARK 3 L TENSOR REMARK 3 L11: 6.0784 L22: 6.9405 REMARK 3 L33: 3.9000 L12: 0.4660 REMARK 3 L13: -0.6991 L23: 0.6726 REMARK 3 S TENSOR REMARK 3 S11: 0.1004 S12: 0.8107 S13: 0.5713 REMARK 3 S21: -0.5193 S22: -0.2314 S23: -1.2572 REMARK 3 S31: -0.1864 S32: 0.6051 S33: 0.1415 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 177 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.5369 18.0979 9.2306 REMARK 3 T TENSOR REMARK 3 T11: 0.1897 T22: 0.2252 REMARK 3 T33: 0.2232 T12: 0.0060 REMARK 3 T13: 0.0200 T23: 0.0365 REMARK 3 L TENSOR REMARK 3 L11: 2.7880 L22: 2.3023 REMARK 3 L33: 1.1726 L12: 0.4106 REMARK 3 L13: -0.8022 L23: 0.2429 REMARK 3 S TENSOR REMARK 3 S11: 0.1233 S12: 0.1146 S13: 0.2531 REMARK 3 S21: -0.0180 S22: -0.0803 S23: -0.3317 REMARK 3 S31: -0.0725 S32: 0.0967 S33: -0.0523 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 178 THROUGH 243 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.6952 14.2672 15.8847 REMARK 3 T TENSOR REMARK 3 T11: 0.1686 T22: 0.1665 REMARK 3 T33: 0.1546 T12: 0.0275 REMARK 3 T13: 0.0114 T23: 0.0220 REMARK 3 L TENSOR REMARK 3 L11: 2.6461 L22: 1.7662 REMARK 3 L33: 1.3678 L12: 0.7752 REMARK 3 L13: 0.1814 L23: 0.6209 REMARK 3 S TENSOR REMARK 3 S11: 0.0226 S12: -0.0331 S13: -0.0426 REMARK 3 S21: 0.0080 S22: 0.0074 S23: -0.1209 REMARK 3 S31: -0.0385 S32: 0.0592 S33: -0.0361 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 244 THROUGH 265 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.5345 19.7640 28.0665 REMARK 3 T TENSOR REMARK 3 T11: 0.2617 T22: 0.3389 REMARK 3 T33: 0.1817 T12: 0.0072 REMARK 3 T13: 0.0146 T23: -0.0164 REMARK 3 L TENSOR REMARK 3 L11: 6.6101 L22: 2.9583 REMARK 3 L33: 1.6287 L12: -1.6534 REMARK 3 L13: -0.1142 L23: 0.3390 REMARK 3 S TENSOR REMARK 3 S11: -0.1766 S12: -0.6021 S13: 0.1510 REMARK 3 S21: 0.3374 S22: 0.1271 S23: -0.0828 REMARK 3 S31: -0.0167 S32: 0.0627 S33: 0.0477 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 21 THROUGH 142 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.9939 -1.1751 15.6681 REMARK 3 T TENSOR REMARK 3 T11: 0.1385 T22: 0.1716 REMARK 3 T33: 0.1869 T12: 0.0025 REMARK 3 T13: 0.0165 T23: -0.0166 REMARK 3 L TENSOR REMARK 3 L11: 1.8442 L22: 1.2901 REMARK 3 L33: 0.8283 L12: 0.2614 REMARK 3 L13: -0.0495 L23: -0.2095 REMARK 3 S TENSOR REMARK 3 S11: -0.0397 S12: 0.0071 S13: -0.1801 REMARK 3 S21: -0.0095 S22: 0.0276 S23: 0.0058 REMARK 3 S31: 0.1136 S32: -0.0037 S33: 0.0135 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 143 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.5689 -5.9378 7.6696 REMARK 3 T TENSOR REMARK 3 T11: 0.3693 T22: 0.4476 REMARK 3 T33: 0.4995 T12: -0.0642 REMARK 3 T13: -0.0431 T23: -0.0638 REMARK 3 L TENSOR REMARK 3 L11: 0.9950 L22: 3.1177 REMARK 3 L33: 1.6960 L12: 1.3948 REMARK 3 L13: 0.1650 L23: -1.1436 REMARK 3 S TENSOR REMARK 3 S11: 0.0181 S12: 0.7858 S13: -0.6997 REMARK 3 S21: -0.7041 S22: 0.0906 S23: 0.9816 REMARK 3 S31: 0.3227 S32: -0.7359 S33: -0.0700 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 156 THROUGH 243 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.0398 -3.4948 16.9316 REMARK 3 T TENSOR REMARK 3 T11: 0.1662 T22: 0.1436 REMARK 3 T33: 0.1927 T12: 0.0260 REMARK 3 T13: 0.0034 T23: -0.0193 REMARK 3 L TENSOR REMARK 3 L11: 3.4386 L22: 1.0433 REMARK 3 L33: 1.3933 L12: 0.6965 REMARK 3 L13: -0.2824 L23: -0.5409 REMARK 3 S TENSOR REMARK 3 S11: -0.0308 S12: -0.0053 S13: -0.1928 REMARK 3 S21: -0.0341 S22: -0.0153 S23: 0.0150 REMARK 3 S31: 0.0545 S32: -0.0926 S33: 0.0615 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 244 THROUGH 265 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.6877 -3.8804 31.5327 REMARK 3 T TENSOR REMARK 3 T11: 0.2284 T22: 0.3317 REMARK 3 T33: 0.2090 T12: 0.0055 REMARK 3 T13: 0.0076 T23: 0.0706 REMARK 3 L TENSOR REMARK 3 L11: 8.0407 L22: 3.3619 REMARK 3 L33: 2.8313 L12: -0.8997 REMARK 3 L13: 0.4898 L23: -0.8399 REMARK 3 S TENSOR REMARK 3 S11: -0.0585 S12: -1.0048 S13: -0.1840 REMARK 3 S21: 0.3988 S22: -0.0965 S23: -0.1172 REMARK 3 S31: 0.0005 S32: 0.0720 S33: 0.0925 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6RJ7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-APR-19. REMARK 100 THE DEPOSITION ID IS D_1292102033. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-SEP-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9159 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51225 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 66.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 16.80 REMARK 200 R MERGE (I) : 0.13700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: 4S2P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CACL2 0.1M TRIS PH 8.0 20% W/V REMARK 280 PEG6000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.01500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 21 REMARK 465 MET A 22 REMARK 465 LYS A 23 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 24 CG CD OE1 OE2 REMARK 470 ASN A 28 CG OD1 ND2 REMARK 470 LYS A 29 CD CE NZ REMARK 470 LYS A 39 CG CD CE NZ REMARK 470 GLN A 41 CD OE1 NE2 REMARK 470 LYS A 51 CD CE NZ REMARK 470 LYS A 60 CD CE NZ REMARK 470 LYS A 87 CD CE NZ REMARK 470 LYS A 94 CD CE NZ REMARK 470 GLN A 129 OE1 NE2 REMARK 470 LYS A 137 CD CE NZ REMARK 470 VAL A 153 CG1 CG2 REMARK 470 LYS A 180 CE NZ REMARK 470 HIS A 182 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 23 CG CD CE NZ REMARK 470 LYS B 29 CD CE NZ REMARK 470 GLU B 37 CG CD OE1 OE2 REMARK 470 LYS B 39 CG CD CE NZ REMARK 470 LYS B 51 CE NZ REMARK 470 LEU B 59 CD1 CD2 REMARK 470 LYS B 60 CG CD CE NZ REMARK 470 LYS B 87 CG CD CE NZ REMARK 470 LYS B 94 CD CE NZ REMARK 470 LYS B 180 CD CE NZ REMARK 470 ASP B 230 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C SER B 212 H011 K5H B 213 1.26 REMARK 500 C SER A 212 H011 K5H A 213 1.30 REMARK 500 O HOH A 483 O HOH A 539 1.92 REMARK 500 O HOH A 548 O HOH B 450 2.10 REMARK 500 O GLY B 151 O HOH B 301 2.14 REMARK 500 O HOH A 425 O HOH A 565 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 154 ND2 ASN B 152 1655 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 69 -142.22 45.58 REMARK 500 ASN A 106 56.30 -93.07 REMARK 500 SER A 155 10.62 -159.55 REMARK 500 ASP A 159 20.09 -148.04 REMARK 500 ALA B 69 -137.73 47.89 REMARK 500 ASP B 88 -170.94 -170.64 REMARK 500 SER B 155 17.90 -148.95 REMARK 500 ASP B 159 22.65 -146.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Ligand residues K5H A 213 REMARK 800 through ARG A 214 bound to SER A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Ligand residues K5H B 213 REMARK 800 through ARG B 214 bound to SER B 212 DBREF 6RJ7 A 23 265 UNP Q6XEC0 Q6XEC0_KLEPN 23 265 DBREF 6RJ7 B 23 265 UNP Q6XEC0 Q6XEC0_KLEPN 23 265 SEQADV 6RJ7 SER A 21 UNP Q6XEC0 EXPRESSION TAG SEQADV 6RJ7 MET A 22 UNP Q6XEC0 EXPRESSION TAG SEQADV 6RJ7 K5H A 213 UNP Q6XEC0 THR 213 ENGINEERED MUTATION SEQADV 6RJ7 SER B 21 UNP Q6XEC0 EXPRESSION TAG SEQADV 6RJ7 MET B 22 UNP Q6XEC0 EXPRESSION TAG SEQADV 6RJ7 K5H B 213 UNP Q6XEC0 THR 213 ENGINEERED MUTATION SEQRES 1 A 245 SER MET LYS GLU TRP GLN GLU ASN LYS SER TRP ASN ALA SEQRES 2 A 245 HIS PHE THR GLU HIS LYS SER GLN GLY VAL VAL VAL LEU SEQRES 3 A 245 TRP ASN GLU ASN LYS GLN GLN GLY PHE THR ASN ASN LEU SEQRES 4 A 245 LYS ARG ALA ASN GLN ALA PHE LEU PRO ALA SER THR PHE SEQRES 5 A 245 KCX ILE PRO ASN SER LEU ILE ALA LEU ASP LEU GLY VAL SEQRES 6 A 245 VAL LYS ASP GLU HIS GLN VAL PHE LYS TRP ASP GLY GLN SEQRES 7 A 245 THR ARG ASP ILE ALA THR TRP ASN ARG ASP HIS ASN LEU SEQRES 8 A 245 ILE THR ALA MET LYS TYR SER VAL VAL PRO VAL TYR GLN SEQRES 9 A 245 GLU PHE ALA ARG GLN ILE GLY GLU ALA ARG MET SER LYS SEQRES 10 A 245 MET LEU HIS ALA PHE ASP TYR GLY ASN GLU ASP ILE SER SEQRES 11 A 245 GLY ASN VAL ASP SER PHE TRP LEU ASP GLY GLY ILE ARG SEQRES 12 A 245 ILE SER ALA THR GLU GLN ILE SER PHE LEU ARG LYS LEU SEQRES 13 A 245 TYR HIS ASN LYS LEU HIS VAL SER GLU ARG SER GLN ARG SEQRES 14 A 245 ILE VAL LYS GLN ALA MET LEU THR GLU ALA ASN GLY ASP SEQRES 15 A 245 TYR ILE ILE ARG ALA LYS THR GLY TYR SER K5H ARG ILE SEQRES 16 A 245 GLU PRO LYS ILE GLY TRP TRP VAL GLY TRP VAL GLU LEU SEQRES 17 A 245 ASP ASP ASN VAL TRP PHE PHE ALA MET ASN MET ASP MET SEQRES 18 A 245 PRO THR SER ASP GLY LEU GLY LEU ARG GLN ALA ILE THR SEQRES 19 A 245 LYS GLU VAL LEU LYS GLN GLU LYS ILE ILE PRO SEQRES 1 B 245 SER MET LYS GLU TRP GLN GLU ASN LYS SER TRP ASN ALA SEQRES 2 B 245 HIS PHE THR GLU HIS LYS SER GLN GLY VAL VAL VAL LEU SEQRES 3 B 245 TRP ASN GLU ASN LYS GLN GLN GLY PHE THR ASN ASN LEU SEQRES 4 B 245 LYS ARG ALA ASN GLN ALA PHE LEU PRO ALA SER THR PHE SEQRES 5 B 245 KCX ILE PRO ASN SER LEU ILE ALA LEU ASP LEU GLY VAL SEQRES 6 B 245 VAL LYS ASP GLU HIS GLN VAL PHE LYS TRP ASP GLY GLN SEQRES 7 B 245 THR ARG ASP ILE ALA THR TRP ASN ARG ASP HIS ASN LEU SEQRES 8 B 245 ILE THR ALA MET LYS TYR SER VAL VAL PRO VAL TYR GLN SEQRES 9 B 245 GLU PHE ALA ARG GLN ILE GLY GLU ALA ARG MET SER LYS SEQRES 10 B 245 MET LEU HIS ALA PHE ASP TYR GLY ASN GLU ASP ILE SER SEQRES 11 B 245 GLY ASN VAL ASP SER PHE TRP LEU ASP GLY GLY ILE ARG SEQRES 12 B 245 ILE SER ALA THR GLU GLN ILE SER PHE LEU ARG LYS LEU SEQRES 13 B 245 TYR HIS ASN LYS LEU HIS VAL SER GLU ARG SER GLN ARG SEQRES 14 B 245 ILE VAL LYS GLN ALA MET LEU THR GLU ALA ASN GLY ASP SEQRES 15 B 245 TYR ILE ILE ARG ALA LYS THR GLY TYR SER K5H ARG ILE SEQRES 16 B 245 GLU PRO LYS ILE GLY TRP TRP VAL GLY TRP VAL GLU LEU SEQRES 17 B 245 ASP ASP ASN VAL TRP PHE PHE ALA MET ASN MET ASP MET SEQRES 18 B 245 PRO THR SER ASP GLY LEU GLY LEU ARG GLN ALA ILE THR SEQRES 19 B 245 LYS GLU VAL LEU LYS GLN GLU LYS ILE ILE PRO MODRES 6RJ7 KCX A 73 LYS MODIFIED RESIDUE MODRES 6RJ7 KCX B 73 LYS MODIFIED RESIDUE HET KCX A 73 23 HET K5H A 213 23 HET KCX B 73 23 HET K5H B 213 23 HET CL A 301 1 HET CA A 302 1 HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM K5H (2~{R})-2-AZANYL-3-[3,3,3-TRIS(FLUORANYL)-2,2- HETNAM 2 K5H BIS(OXIDANYL)PROPYL]SULFANYL-PROPANOIC ACID HETNAM CL CHLORIDE ION HETNAM CA CALCIUM ION FORMUL 1 KCX 2(C7 H14 N2 O4) FORMUL 1 K5H 2(C6 H10 F3 N O4 S) FORMUL 3 CL CL 1- FORMUL 4 CA CA 2+ FORMUL 5 HOH *359(H2 O) HELIX 1 AA1 LYS A 29 TRP A 31 5 3 HELIX 2 AA2 ASN A 32 GLU A 37 1 6 HELIX 3 AA3 ASN A 58 ASN A 63 1 6 HELIX 4 AA4 PRO A 68 THR A 71 5 4 HELIX 5 AA5 PHE A 72 LEU A 83 1 12 HELIX 6 AA6 ILE A 102 ASN A 106 5 5 HELIX 7 AA7 ASN A 110 TYR A 117 1 8 HELIX 8 AA8 VAL A 119 GLY A 131 1 13 HELIX 9 AA9 GLY A 131 ASP A 143 1 13 HELIX 10 AB1 SER A 155 GLY A 160 1 6 HELIX 11 AB2 ALA A 166 HIS A 178 1 13 HELIX 12 AB3 SER A 184 MET A 195 1 12 HELIX 13 AB4 THR A 243 LEU A 247 5 5 HELIX 14 AB5 GLY A 248 GLU A 261 1 14 HELIX 15 AB6 TRP B 31 HIS B 38 1 8 HELIX 16 AB7 ASN B 58 ASN B 63 1 6 HELIX 17 AB8 PRO B 68 THR B 71 5 4 HELIX 18 AB9 PHE B 72 LEU B 83 1 12 HELIX 19 AC1 ILE B 102 ASN B 106 5 5 HELIX 20 AC2 ASN B 110 TYR B 117 1 8 HELIX 21 AC3 VAL B 119 ASP B 143 1 25 HELIX 22 AC4 SER B 155 GLY B 160 1 6 HELIX 23 AC5 SER B 165 HIS B 178 1 14 HELIX 24 AC6 SER B 184 MET B 195 1 12 HELIX 25 AC7 THR B 243 LEU B 247 5 5 HELIX 26 AC8 GLY B 248 GLU B 261 1 14 SHEET 1 AA1 7 TRP A 25 GLU A 27 0 SHEET 2 AA1 7 GLN A 53 THR A 56 1 O THR A 56 N GLN A 26 SHEET 3 AA1 7 GLY A 42 ASN A 48 -1 N ASN A 48 O GLN A 53 SHEET 4 AA1 7 VAL A 232 ASP A 240 -1 O ASN A 238 N VAL A 43 SHEET 5 AA1 7 ILE A 219 GLU A 227 -1 N GLY A 224 O PHE A 235 SHEET 6 AA1 7 ILE A 204 SER A 212 -1 N ILE A 204 O GLU A 227 SHEET 7 AA1 7 LEU A 196 ALA A 199 -1 N GLU A 198 O ILE A 205 SHEET 1 AA2 2 ALA A 65 PHE A 66 0 SHEET 2 AA2 2 ILE A 164 SER A 165 -1 O ILE A 164 N PHE A 66 SHEET 1 AA3 7 TRP B 25 GLU B 27 0 SHEET 2 AA3 7 GLN B 53 THR B 56 1 O THR B 56 N GLN B 26 SHEET 3 AA3 7 GLY B 42 ASN B 48 -1 N ASN B 48 O GLN B 53 SHEET 4 AA3 7 VAL B 232 ASP B 240 -1 O ASN B 238 N VAL B 43 SHEET 5 AA3 7 ILE B 219 GLU B 227 -1 N GLY B 224 O PHE B 235 SHEET 6 AA3 7 ILE B 204 SER B 212 -1 N ILE B 204 O GLU B 227 SHEET 7 AA3 7 LEU B 196 ALA B 199 -1 N GLU B 198 O ILE B 205 LINK C PHE A 72 N KCX A 73 1555 1555 1.33 LINK C KCX A 73 N ILE A 74 1555 1555 1.33 LINK C SER A 212 N K5H A 213 1555 1555 1.34 LINK C K5H A 213 N ARG A 214 1555 1555 1.33 LINK C PHE B 72 N KCX B 73 1555 1555 1.33 LINK C KCX B 73 N ILE B 74 1555 1555 1.33 LINK C SER B 212 N K5H B 213 1555 1555 1.33 LINK C K5H B 213 N ARG B 214 1555 1555 1.33 LINK OG SER A 184 CA CA A 302 1555 1555 2.98 CISPEP 1 GLU A 216 PRO A 217 0 -3.74 CISPEP 2 GLU B 216 PRO B 217 0 0.89 SITE 1 AC1 2 ARG A 206 ARG B 206 SITE 1 AC2 3 SER A 184 ARG A 186 SER A 187 SITE 1 AC3 9 LEU A 158 TYR A 211 SER A 212 ILE A 215 SITE 2 AC3 9 LYS A 218 HOH A 423 HOH A 457 ARG B 214 SITE 3 AC3 9 HOH B 352 SITE 1 AC4 13 THR A 99 ARG A 100 ARG A 214 LEU B 158 SITE 2 AC4 13 TYR B 211 SER B 212 ILE B 215 LYS B 218 SITE 3 AC4 13 HOH B 329 HOH B 336 HOH B 346 HOH B 364 SITE 4 AC4 13 HOH B 432 CRYST1 64.360 58.030 66.430 90.00 91.49 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015538 0.000000 0.000404 0.00000 SCALE2 0.000000 0.017232 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015059 0.00000