HEADER FLAVOPROTEIN 29-APR-19 6RK0 TITLE STRUCTURE OF THE FLAVOCYTOCHROME ANF3 FROM AZOTOBACTER VINELANDII COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AZOTOBACTER VINELANDII (STRAIN DJ / ATCC BAA- SOURCE 3 1303); SOURCE 4 ORGANISM_TAXID: 322710; SOURCE 5 STRAIN: DJ / ATCC BAA-1303; SOURCE 6 GENE: AVIN_49040; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI KRX; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 1452720; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PRSET-A MODIFIED KEYWDS OXIDASE, FLAVOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.W.MURRAY,F.VARGHESE,B.KABASAKAL REVDAT 5 24-JAN-24 6RK0 1 LINK REVDAT 4 21-AUG-19 6RK0 1 REMARK REVDAT 3 26-JUN-19 6RK0 1 JRNL REVDAT 2 15-MAY-19 6RK0 1 JRNL REVDAT 1 08-MAY-19 6RK0 0 JRNL AUTH F.VARGHESE,B.V.KABASAKAL,C.A.R.COTTON,J.SCHUMACHER, JRNL AUTH 2 A.W.RUTHERFORD,A.FANTUZZI,J.W.MURRAY JRNL TITL A LOW-POTENTIAL TERMINAL OXIDASE ASSOCIATED WITH THE JRNL TITL 2 IRON-ONLY NITROGENASE FROM THE NITROGEN-FIXING JRNL TITL 3 BACTERIUMAZOTOBACTER VINELANDII. JRNL REF J.BIOL.CHEM. V. 294 9367 2019 JRNL REFN ESSN 1083-351X JRNL PMID 31043481 JRNL DOI 10.1074/JBC.RA118.007285 REMARK 2 REMARK 2 RESOLUTION. 0.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 76.0 REMARK 3 NUMBER OF REFLECTIONS : 203120 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.124 REMARK 3 R VALUE (WORKING SET) : 0.124 REMARK 3 FREE R VALUE : 0.138 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 10214 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.0182 - 3.0755 0.94 8031 433 0.1349 0.1436 REMARK 3 2 3.0755 - 2.4413 0.93 7899 423 0.1381 0.1535 REMARK 3 3 2.4413 - 2.1328 0.93 7956 402 0.1276 0.1419 REMARK 3 4 2.1328 - 1.9378 0.93 7984 394 0.1148 0.1190 REMARK 3 5 1.9378 - 1.7989 0.94 7955 417 0.1153 0.1316 REMARK 3 6 1.7989 - 1.6928 0.95 8084 408 0.1100 0.1283 REMARK 3 7 1.6928 - 1.6081 0.95 8070 442 0.1036 0.1301 REMARK 3 8 1.6081 - 1.5381 0.95 8048 408 0.1022 0.1196 REMARK 3 9 1.5381 - 1.4788 0.95 8051 418 0.0998 0.1118 REMARK 3 10 1.4788 - 1.4278 0.95 7981 475 0.0999 0.1235 REMARK 3 11 1.4278 - 1.3832 0.95 7977 439 0.1005 0.1161 REMARK 3 12 1.3832 - 1.3436 0.94 7940 410 0.0995 0.1206 REMARK 3 13 1.3436 - 1.3083 0.93 7916 444 0.1016 0.1246 REMARK 3 14 1.3083 - 1.2763 0.93 7847 410 0.1046 0.1285 REMARK 3 15 1.2763 - 1.2473 0.92 7717 423 0.1099 0.1415 REMARK 3 16 1.2473 - 1.2208 0.90 7582 387 0.1120 0.1226 REMARK 3 17 1.2208 - 1.1964 0.89 7540 405 0.1156 0.1362 REMARK 3 18 1.1964 - 1.1738 0.88 7510 389 0.1168 0.1241 REMARK 3 19 1.1738 - 1.1528 0.87 7343 400 0.1247 0.1374 REMARK 3 20 1.1528 - 1.1333 0.85 7139 389 0.1333 0.1556 REMARK 3 21 1.1333 - 1.1150 0.83 7009 371 0.1411 0.1599 REMARK 3 22 1.1150 - 1.0978 0.72 6061 313 0.1558 0.1719 REMARK 3 23 1.0978 - 1.0817 0.60 5114 245 0.1655 0.1822 REMARK 3 24 1.0817 - 1.0665 0.50 4212 229 0.1826 0.1967 REMARK 3 25 1.0665 - 1.0520 0.42 3551 183 0.1989 0.2203 REMARK 3 26 1.0520 - 1.0384 0.35 2933 161 0.2157 0.2530 REMARK 3 27 1.0384 - 1.0254 0.30 2516 134 0.2368 0.2234 REMARK 3 28 1.0254 - 1.0130 0.24 2019 110 0.2701 0.2702 REMARK 3 29 1.0130 - 1.0013 0.20 1659 93 0.2973 0.2509 REMARK 3 30 1.0013 - 0.9900 0.15 1262 59 0.3184 0.3057 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.060 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.040 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 3946 REMARK 3 ANGLE : 1.332 5473 REMARK 3 CHIRALITY : 0.102 546 REMARK 3 PLANARITY : 0.012 686 REMARK 3 DIHEDRAL : 11.452 2192 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6RK0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-APR-19. REMARK 100 THE DEPOSITION ID IS D_1292102078. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 203126 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.990 REMARK 200 RESOLUTION RANGE LOW (A) : 32.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 76.0 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.03536 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.6500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 19.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.72750 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4YBN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25.5% PEG 4000, 170 MM AMMONIUM REMARK 280 SULFATE, 15% (V/V) GLYCEROL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 44.93500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -145.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASN A 3 REMARK 465 ARG A 4 REMARK 465 THR A 5 REMARK 465 ASP A 6 REMARK 465 ASP A 7 REMARK 465 GLU A 8 REMARK 465 TYR A 9 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ASN B 3 REMARK 465 ARG B 4 REMARK 465 THR B 5 REMARK 465 ASP B 6 REMARK 465 ASP B 7 REMARK 465 GLU B 8 REMARK 465 TYR B 9 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N ALA B 151 O HOH B 501 2.08 REMARK 500 NZ LYS B 152 O HOH B 501 2.15 REMARK 500 NH2 ARG B 21 O HOH B 502 2.16 REMARK 500 O HOH A 412 O HOH A 643 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 20 -60.97 -102.89 REMARK 500 ASN A 106 -168.27 -163.98 REMARK 500 ASN A 106 -169.72 -163.98 REMARK 500 ASN B 106 -168.50 -164.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 683 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH A 684 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH B 825 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH B 826 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH B 827 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH B 828 DISTANCE = 6.75 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 70 NE2 REMARK 620 2 HEM A 301 NA 93.2 REMARK 620 3 HEM A 301 NB 88.8 87.3 REMARK 620 4 HEM A 301 NC 88.4 177.9 91.5 REMARK 620 5 HEM A 301 ND 93.3 90.3 176.9 90.9 REMARK 620 6 HOH B 550 O 176.4 88.5 88.1 89.7 89.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 70 NE2 REMARK 620 2 HEM A 301 NA 94.0 REMARK 620 3 HEM A 301 NB 90.8 94.4 REMARK 620 4 HEM A 301 NC 84.0 172.9 92.5 REMARK 620 5 HEM A 301 ND 87.4 88.8 176.5 84.3 REMARK 620 6 HOH B 550 O 171.4 92.9 93.8 88.6 87.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 405 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 456 O REMARK 620 2 HEM B 405 NA 89.5 REMARK 620 3 HEM B 405 NB 91.5 91.7 REMARK 620 4 HEM B 405 NC 87.5 176.1 90.9 REMARK 620 5 HEM B 405 ND 86.0 88.3 177.5 89.0 REMARK 620 6 HIS B 70 NE2 176.6 93.0 90.6 89.8 91.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 405 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 456 O REMARK 620 2 HEM B 405 NA 87.7 REMARK 620 3 HEM B 405 NB 87.9 87.3 REMARK 620 4 HEM B 405 NC 88.2 174.6 89.0 REMARK 620 5 HEM B 405 ND 88.3 89.9 175.4 93.5 REMARK 620 6 HIS B 70 NE2 176.0 92.1 88.0 91.7 95.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM B 405 DBREF 6RK0 A 1 223 UNP C1DK98 C1DK98_AZOVD 1 223 DBREF 6RK0 B 1 223 UNP C1DK98 C1DK98_AZOVD 1 223 SEQADV 6RK0 GLY A -1 UNP C1DK98 EXPRESSION TAG SEQADV 6RK0 SER A 0 UNP C1DK98 EXPRESSION TAG SEQADV 6RK0 GLY B -1 UNP C1DK98 EXPRESSION TAG SEQADV 6RK0 SER B 0 UNP C1DK98 EXPRESSION TAG SEQRES 1 A 225 GLY SER MET THR ASN ARG THR ASP ASP GLU TYR PRO GLU SEQRES 2 A 225 ALA PRO SER ASP ARG THR HIS VAL LYS ARG TYR HIS TRP SEQRES 3 A 225 LEU ALA ARG TYR ASP GLN GLU THR VAL LYS ALA ILE LEU SEQRES 4 A 225 ASP ALA THR PRO LEU ALA HIS VAL GLY CYS MET MET ASN SEQRES 5 A 225 GLY VAL PRO PHE VAL THR PRO THR PHE PHE TRP ARG GLU SEQRES 6 A 225 GLY ASP ARG VAL TYR TRP HIS GLY SER SER ALA GLY ARG SEQRES 7 A 225 LEU PHE LYS ALA LEU GLU HIS GLN ASP ILE CYS LEU THR SEQRES 8 A 225 VAL SER LEU LEU ASP GLY LEU VAL ILE ALA ARG SER ALA SEQRES 9 A 225 TYR ASN PHE ASN CYS ASN PHE ARG SER VAL MET LEU LEU SEQRES 10 A 225 GLY ARG ALA GLU LEU ILE SER ASP GLU ALA VAL LYS ALA SEQRES 11 A 225 GLU LYS LEU ARG ASN PHE VAL ASP GLY LEU ILE PRO GLY SEQRES 12 A 225 GLU TRP GLU ARG LEU ARG PRO VAL HIS ALA LYS GLU ILE SEQRES 13 A 225 GLU ALA THR ALA VAL ALA SER LEU SER ILE ALA GLU ALA SEQRES 14 A 225 SER CYS LYS VAL ARG THR GLY PRO PRO LEU ASP ASP GLU SEQRES 15 A 225 GLU ASP TYR ALA PHE PRO SER TRP ALA GLY VAL ILE PRO SEQRES 16 A 225 ILE ARG TYR GLN VAL LEU PRO PRO GLU PRO ASP PRO ARG SEQRES 17 A 225 ASN LEU PRO ASP VAL PRO MET PRO GLU ASP ILE LEU LYS SEQRES 18 A 225 PHE ARG LEU GLY SEQRES 1 B 225 GLY SER MET THR ASN ARG THR ASP ASP GLU TYR PRO GLU SEQRES 2 B 225 ALA PRO SER ASP ARG THR HIS VAL LYS ARG TYR HIS TRP SEQRES 3 B 225 LEU ALA ARG TYR ASP GLN GLU THR VAL LYS ALA ILE LEU SEQRES 4 B 225 ASP ALA THR PRO LEU ALA HIS VAL GLY CYS MET MET ASN SEQRES 5 B 225 GLY VAL PRO PHE VAL THR PRO THR PHE PHE TRP ARG GLU SEQRES 6 B 225 GLY ASP ARG VAL TYR TRP HIS GLY SER SER ALA GLY ARG SEQRES 7 B 225 LEU PHE LYS ALA LEU GLU HIS GLN ASP ILE CYS LEU THR SEQRES 8 B 225 VAL SER LEU LEU ASP GLY LEU VAL ILE ALA ARG SER ALA SEQRES 9 B 225 TYR ASN PHE ASN CYS ASN PHE ARG SER VAL MET LEU LEU SEQRES 10 B 225 GLY ARG ALA GLU LEU ILE SER ASP GLU ALA VAL LYS ALA SEQRES 11 B 225 GLU LYS LEU ARG ASN PHE VAL ASP GLY LEU ILE PRO GLY SEQRES 12 B 225 GLU TRP GLU ARG LEU ARG PRO VAL HIS ALA LYS GLU ILE SEQRES 13 B 225 GLU ALA THR ALA VAL ALA SER LEU SER ILE ALA GLU ALA SEQRES 14 B 225 SER CYS LYS VAL ARG THR GLY PRO PRO LEU ASP ASP GLU SEQRES 15 B 225 GLU ASP TYR ALA PHE PRO SER TRP ALA GLY VAL ILE PRO SEQRES 16 B 225 ILE ARG TYR GLN VAL LEU PRO PRO GLU PRO ASP PRO ARG SEQRES 17 B 225 ASN LEU PRO ASP VAL PRO MET PRO GLU ASP ILE LEU LYS SEQRES 18 B 225 PHE ARG LEU GLY HET HEM A 301 86 HET SO4 B 401 5 HET SO4 B 402 5 HET FAD B 403 53 HET FAD B 404 53 HET HEM B 405 86 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM SO4 SULFATE ION HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETSYN HEM HEME FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 4 SO4 2(O4 S 2-) FORMUL 6 FAD 2(C27 H33 N9 O15 P2) FORMUL 9 HOH *612(H2 O) HELIX 1 AA1 SER A 14 HIS A 18 5 5 HELIX 2 AA2 TYR A 22 TRP A 24 5 3 HELIX 3 AA3 ASP A 29 ALA A 39 1 11 HELIX 4 AA4 GLY A 75 LEU A 81 1 7 HELIX 5 AA5 GLU A 82 GLN A 84 5 3 HELIX 6 AA6 SER A 101 PHE A 105 5 5 HELIX 7 AA7 ASP A 123 ILE A 139 1 17 HELIX 8 AA8 GLU A 142 LEU A 146 5 5 HELIX 9 AA9 HIS A 150 ALA A 156 1 7 HELIX 10 AB1 ASP A 179 TYR A 183 5 5 HELIX 11 AB2 PRO A 214 PHE A 220 5 7 HELIX 12 AB3 SER B 14 HIS B 18 5 5 HELIX 13 AB4 TYR B 22 TRP B 24 5 3 HELIX 14 AB5 ASP B 29 THR B 40 1 12 HELIX 15 AB6 GLY B 75 LEU B 81 1 7 HELIX 16 AB7 GLU B 82 GLN B 84 5 3 HELIX 17 AB8 SER B 101 PHE B 105 5 5 HELIX 18 AB9 ASP B 123 ILE B 139 1 17 HELIX 19 AC1 GLU B 142 LEU B 146 5 5 HELIX 20 AC2 HIS B 150 ALA B 156 1 7 HELIX 21 AC3 ASP B 179 TYR B 183 5 5 HELIX 22 AC4 PRO B 214 PHE B 220 5 7 SHEET 1 A 5 VAL A 52 PHE A 59 0 SHEET 2 A 5 LEU A 42 MET A 49 -1 SHEET 3 A 5 ILE A 86 VAL A 97 -1 SHEET 4 A 5 ASN A 106 GLY A 116 -1 SHEET 5 A 5 ALA A 167 ARG A 172 -1 SHEET 1 B 3 TRP A 61 GLU A 63 0 SHEET 2 B 3 ARG A 66 SER A 72 -1 SHEET 3 B 3 THR A 157 SER A 163 -1 SHEET 1 C 2 GLY A 95 ILE A 98 0 SHEET 2 C 2 GLY A 190 PRO A 193 -1 SHEET 1 D 5 VAL B 52 PHE B 59 0 SHEET 2 D 5 LEU B 42 MET B 49 -1 SHEET 3 D 5 ILE B 86 VAL B 97 -1 SHEET 4 D 5 ASN B 106 GLY B 116 -1 SHEET 5 D 5 ALA B 167 ARG B 172 -1 SHEET 1 E 3 TRP B 61 GLU B 63 0 SHEET 2 E 3 ARG B 66 SER B 72 -1 SHEET 3 E 3 THR B 157 SER B 163 -1 SHEET 1 F 2 GLY B 95 ILE B 98 0 SHEET 2 F 2 GLY B 190 PRO B 193 -1 LINK NE2 HIS A 70 FE AHEM A 301 1555 1555 2.00 LINK NE2 HIS A 70 FE BHEM A 301 1555 1555 2.07 LINK FE AHEM A 301 O HOH B 550 1555 1555 2.11 LINK FE BHEM A 301 O HOH B 550 1555 1555 2.06 LINK O HOH A 456 FE AHEM B 405 1555 1555 2.07 LINK O HOH A 456 FE BHEM B 405 1555 1555 2.09 LINK NE2 HIS B 70 FE AHEM B 405 1555 1555 2.01 LINK NE2 HIS B 70 FE BHEM B 405 1555 1555 1.99 SITE 1 AC1 27 PHE A 59 HIS A 70 SER A 72 LEU A 131 SITE 2 AC1 27 PHE A 134 VAL A 135 LEU A 138 TRP A 143 SITE 3 AC1 27 ALA A 156 THR A 157 HOH A 448 HOH A 449 SITE 4 AC1 27 HOH A 453 HOH A 476 HOH A 558 HOH A 572 SITE 5 AC1 27 ARG B 21 TYR B 22 LEU B 25 ALA B 102 SITE 6 AC1 27 TYR B 103 PHE B 105 ASN B 106 CYS B 107 SITE 7 AC1 27 LYS B 170 FAD B 403 HOH B 550 SITE 1 AC2 6 LYS A 34 ARG A 62 GLY A 64 HOH A 523 SITE 2 AC2 6 ASP B 29 GLN B 30 SITE 1 AC3 4 GLU A 31 LYS B 34 ARG B 62 GLY B 64 SITE 1 AC4 30 PHE A 54 THR A 56 PRO A 57 THR A 58 SITE 2 AC4 30 PHE A 59 HIS A 70 GLY A 71 ARG A 76 SITE 3 AC4 30 HEM A 301 HOH A 427 HOH A 477 ARG B 16 SITE 4 AC4 30 THR B 17 HIS B 18 VAL B 19 LYS B 20 SITE 5 AC4 30 ARG B 21 CYS B 107 PHE B 109 SER B 111 SITE 6 AC4 30 MET B 113 SER B 168 LYS B 170 HOH B 528 SITE 7 AC4 30 HOH B 532 HOH B 556 HOH B 579 HOH B 586 SITE 8 AC4 30 HOH B 607 HOH B 623 SITE 1 AC5 32 ARG A 16 THR A 17 HIS A 18 VAL A 19 SITE 2 AC5 32 LYS A 20 ARG A 21 CYS A 107 PHE A 109 SITE 3 AC5 32 SER A 111 MET A 113 SER A 168 LYS A 170 SITE 4 AC5 32 HOH A 444 HOH A 577 LEU B 42 PHE B 54 SITE 5 AC5 32 THR B 56 PRO B 57 THR B 58 PHE B 59 SITE 6 AC5 32 HIS B 70 GLY B 71 ARG B 76 HEM B 405 SITE 7 AC5 32 HOH B 522 HOH B 533 HOH B 542 HOH B 551 SITE 8 AC5 32 HOH B 600 HOH B 601 HOH B 609 HOH B 628 SITE 1 AC6 26 ARG A 21 TYR A 22 LEU A 25 LEU A 96 SITE 2 AC6 26 ALA A 102 TYR A 103 PHE A 105 ASN A 106 SITE 3 AC6 26 LYS A 170 HOH A 456 HOH A 577 PHE B 59 SITE 4 AC6 26 HIS B 70 SER B 72 LEU B 131 PHE B 134 SITE 5 AC6 26 VAL B 135 LEU B 138 TRP B 143 ALA B 156 SITE 6 AC6 26 THR B 157 FAD B 404 HOH B 514 HOH B 534 SITE 7 AC6 26 HOH B 535 HOH B 552 CRYST1 48.970 89.870 59.030 90.00 109.06 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020421 0.000000 0.007055 0.00000 SCALE2 0.000000 0.011127 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017923 0.00000