data_6RK1 # _entry.id 6RK1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6RK1 pdb_00006rk1 10.2210/pdb6rk1/pdb WWPDB D_1292102058 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-10-02 2 'Structure model' 1 1 2020-02-19 3 'Structure model' 1 2 2024-11-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' database_2 6 3 'Structure model' pdbx_entry_details 7 3 'Structure model' pdbx_modification_feature 8 3 'Structure model' pdbx_struct_conn_angle 9 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_abbrev' 2 2 'Structure model' '_citation.journal_id_CSD' 3 2 'Structure model' '_citation.journal_id_ISSN' 4 2 'Structure model' '_citation.journal_volume' 5 2 'Structure model' '_citation.page_first' 6 2 'Structure model' '_citation.page_last' 7 2 'Structure model' '_citation.pdbx_database_id_DOI' 8 2 'Structure model' '_citation.pdbx_database_id_PubMed' 9 2 'Structure model' '_citation.title' 10 2 'Structure model' '_citation.year' 11 3 'Structure model' '_database_2.pdbx_DOI' 12 3 'Structure model' '_database_2.pdbx_database_accession' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 18 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 19 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 20 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 21 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 22 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 23 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 24 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 25 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 26 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 27 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 28 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 29 3 'Structure model' '_pdbx_struct_conn_angle.value' 30 3 'Structure model' '_struct_conn.pdbx_dist_value' 31 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 32 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 33 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 34 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 35 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 36 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 37 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 38 3 'Structure model' '_struct_conn.ptnr1_symmetry' 39 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 40 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 41 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 42 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 43 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 44 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 45 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 46 3 'Structure model' '_struct_conn.ptnr2_symmetry' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6RK1 _pdbx_database_status.recvd_initial_deposition_date 2019-04-29 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Xu, E.-R.' 1 ? 'Hyvonen, M.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Acta Crystallogr D Struct Biol' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2059-7983 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 76 _citation.language ? _citation.page_first 124 _citation.page_last 134 _citation.title 'The thrombospondin module 1 domain of the matricellular protein CCN3 shows an atypical disulfide pattern and incomplete CWR layers.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1107/S2059798319016747 _citation.pdbx_database_id_PubMed 32038043 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Xu, E.R.' 1 0000-0001-7300-3868 primary 'Lafita, A.' 2 ? primary 'Bateman, A.' 3 ? primary 'Hyvonen, M.' 4 0000-0001-8683-4070 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'CCN family member 3' 6451.354 2 ? ? ? 'TSP1 domain of CCN3' 2 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 3 ? ? ? ? 4 non-polymer syn 'CHLORIDE ION' 35.453 6 ? ? ? ? 5 water nat water 18.015 140 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Cellular communication network factor 3,Nephroblastoma-overexpressed gene protein homolog,Protein NOV homolog,NovH' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GSMDSSINCIEQTTEWSACSKSCGMGLSTRVTNRNLQCEMVKQTRLCMVRPCEQEPGE _entity_poly.pdbx_seq_one_letter_code_can GSMDSSINCIEQTTEWSACSKSCGMGLSTRVTNRNLQCEMVKQTRLCMVRPCEQEPGE _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 'SODIUM ION' NA 4 'CHLORIDE ION' CL 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 MET n 1 4 ASP n 1 5 SER n 1 6 SER n 1 7 ILE n 1 8 ASN n 1 9 CYS n 1 10 ILE n 1 11 GLU n 1 12 GLN n 1 13 THR n 1 14 THR n 1 15 GLU n 1 16 TRP n 1 17 SER n 1 18 ALA n 1 19 CYS n 1 20 SER n 1 21 LYS n 1 22 SER n 1 23 CYS n 1 24 GLY n 1 25 MET n 1 26 GLY n 1 27 LEU n 1 28 SER n 1 29 THR n 1 30 ARG n 1 31 VAL n 1 32 THR n 1 33 ASN n 1 34 ARG n 1 35 ASN n 1 36 LEU n 1 37 GLN n 1 38 CYS n 1 39 GLU n 1 40 MET n 1 41 VAL n 1 42 LYS n 1 43 GLN n 1 44 THR n 1 45 ARG n 1 46 LEU n 1 47 CYS n 1 48 MET n 1 49 VAL n 1 50 ARG n 1 51 PRO n 1 52 CYS n 1 53 GLU n 1 54 GLN n 1 55 GLU n 1 56 PRO n 1 57 GLY n 1 58 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 58 _entity_src_gen.gene_src_common_name Rat _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Ccn3, Nov' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Rattus norvegicus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10116 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant pUBS520 _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details 'T7 promoter driven vector with TEV_cleavable hexa-His tag' _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pHAT4 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 192 ? ? ? A . n A 1 2 SER 2 193 ? ? ? A . n A 1 3 MET 3 194 ? ? ? A . n A 1 4 ASP 4 195 ? ? ? A . n A 1 5 SER 5 196 ? ? ? A . n A 1 6 SER 6 197 ? ? ? A . n A 1 7 ILE 7 198 ? ? ? A . n A 1 8 ASN 8 199 199 ASN ASN A . n A 1 9 CYS 9 200 200 CYS CYS A . n A 1 10 ILE 10 201 201 ILE ILE A . n A 1 11 GLU 11 202 202 GLU GLU A . n A 1 12 GLN 12 203 203 GLN GLN A . n A 1 13 THR 13 204 204 THR THR A . n A 1 14 THR 14 205 205 THR THR A . n A 1 15 GLU 15 206 206 GLU GLU A . n A 1 16 TRP 16 207 207 TRP TRP A . n A 1 17 SER 17 208 208 SER SER A . n A 1 18 ALA 18 209 209 ALA ALA A . n A 1 19 CYS 19 210 210 CYS CYS A . n A 1 20 SER 20 211 211 SER SER A . n A 1 21 LYS 21 212 212 LYS LYS A . n A 1 22 SER 22 213 213 SER SER A . n A 1 23 CYS 23 214 214 CYS CYS A . n A 1 24 GLY 24 215 215 GLY GLY A . n A 1 25 MET 25 216 216 MET MET A . n A 1 26 GLY 26 217 217 GLY GLY A . n A 1 27 LEU 27 218 218 LEU LEU A . n A 1 28 SER 28 219 219 SER SER A . n A 1 29 THR 29 220 220 THR THR A . n A 1 30 ARG 30 221 221 ARG ARG A . n A 1 31 VAL 31 222 222 VAL VAL A . n A 1 32 THR 32 223 223 THR THR A . n A 1 33 ASN 33 224 224 ASN ASN A . n A 1 34 ARG 34 225 225 ARG ARG A . n A 1 35 ASN 35 226 226 ASN ASN A . n A 1 36 LEU 36 227 227 LEU LEU A . n A 1 37 GLN 37 228 228 GLN GLN A . n A 1 38 CYS 38 229 229 CYS CYS A . n A 1 39 GLU 39 230 230 GLU GLU A . n A 1 40 MET 40 231 231 MET MET A . n A 1 41 VAL 41 232 232 VAL VAL A . n A 1 42 LYS 42 233 233 LYS LYS A . n A 1 43 GLN 43 234 234 GLN GLN A . n A 1 44 THR 44 235 235 THR THR A . n A 1 45 ARG 45 236 236 ARG ARG A . n A 1 46 LEU 46 237 237 LEU LEU A . n A 1 47 CYS 47 238 238 CYS CYS A . n A 1 48 MET 48 239 239 MET MET A . n A 1 49 VAL 49 240 240 VAL VAL A . n A 1 50 ARG 50 241 241 ARG ARG A . n A 1 51 PRO 51 242 242 PRO PRO A . n A 1 52 CYS 52 243 243 CYS CYS A . n A 1 53 GLU 53 244 244 GLU GLU A . n A 1 54 GLN 54 245 ? ? ? A . n A 1 55 GLU 55 246 ? ? ? A . n A 1 56 PRO 56 247 ? ? ? A . n A 1 57 GLY 57 248 ? ? ? A . n A 1 58 GLU 58 249 ? ? ? A . n B 1 1 GLY 1 192 ? ? ? B . n B 1 2 SER 2 193 ? ? ? B . n B 1 3 MET 3 194 ? ? ? B . n B 1 4 ASP 4 195 ? ? ? B . n B 1 5 SER 5 196 ? ? ? B . n B 1 6 SER 6 197 ? ? ? B . n B 1 7 ILE 7 198 ? ? ? B . n B 1 8 ASN 8 199 199 ASN ASN B . n B 1 9 CYS 9 200 200 CYS CYS B . n B 1 10 ILE 10 201 201 ILE ILE B . n B 1 11 GLU 11 202 202 GLU GLU B . n B 1 12 GLN 12 203 203 GLN GLN B . n B 1 13 THR 13 204 204 THR THR B . n B 1 14 THR 14 205 205 THR THR B . n B 1 15 GLU 15 206 206 GLU GLU B . n B 1 16 TRP 16 207 207 TRP TRP B . n B 1 17 SER 17 208 208 SER SER B . n B 1 18 ALA 18 209 209 ALA ALA B . n B 1 19 CYS 19 210 210 CYS CYS B . n B 1 20 SER 20 211 211 SER SER B . n B 1 21 LYS 21 212 212 LYS LYS B . n B 1 22 SER 22 213 213 SER SER B . n B 1 23 CYS 23 214 214 CYS CYS B . n B 1 24 GLY 24 215 215 GLY GLY B . n B 1 25 MET 25 216 216 MET MET B . n B 1 26 GLY 26 217 217 GLY GLY B . n B 1 27 LEU 27 218 218 LEU LEU B . n B 1 28 SER 28 219 219 SER SER B . n B 1 29 THR 29 220 220 THR THR B . n B 1 30 ARG 30 221 221 ARG ARG B . n B 1 31 VAL 31 222 222 VAL VAL B . n B 1 32 THR 32 223 223 THR THR B . n B 1 33 ASN 33 224 224 ASN ASN B . n B 1 34 ARG 34 225 225 ARG ARG B . n B 1 35 ASN 35 226 226 ASN ASN B . n B 1 36 LEU 36 227 227 LEU LEU B . n B 1 37 GLN 37 228 228 GLN GLN B . n B 1 38 CYS 38 229 229 CYS CYS B . n B 1 39 GLU 39 230 230 GLU GLU B . n B 1 40 MET 40 231 231 MET MET B . n B 1 41 VAL 41 232 232 VAL VAL B . n B 1 42 LYS 42 233 233 LYS LYS B . n B 1 43 GLN 43 234 234 GLN GLN B . n B 1 44 THR 44 235 235 THR THR B . n B 1 45 ARG 45 236 236 ARG ARG B . n B 1 46 LEU 46 237 237 LEU LEU B . n B 1 47 CYS 47 238 238 CYS CYS B . n B 1 48 MET 48 239 239 MET MET B . n B 1 49 VAL 49 240 240 VAL VAL B . n B 1 50 ARG 50 241 241 ARG ARG B . n B 1 51 PRO 51 242 242 PRO PRO B . n B 1 52 CYS 52 243 243 CYS CYS B . n B 1 53 GLU 53 244 244 GLU GLU B . n B 1 54 GLN 54 245 ? ? ? B . n B 1 55 GLU 55 246 ? ? ? B . n B 1 56 PRO 56 247 ? ? ? B . n B 1 57 GLY 57 248 ? ? ? B . n B 1 58 GLU 58 249 ? ? ? B . n # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 CL ? ? CL ? ? 'SUBJECT OF INVESTIGATION' ? 2 NA ? ? NA ? ? 'SUBJECT OF INVESTIGATION' ? 3 GOL ? ? GOL ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL 1 301 1 GOL GOL A . D 3 NA 1 302 1 NA NA A . E 3 NA 1 303 2 NA NA A . F 3 NA 1 304 3 NA NA A . G 4 CL 1 305 5 CL CL A . H 4 CL 1 306 6 CL CL A . I 4 CL 1 307 7 CL CL A . J 4 CL 1 308 9 CL CL A . K 4 CL 1 301 4 CL CL B . L 4 CL 1 302 8 CL CL B . M 5 HOH 1 401 68 HOH HOH A . M 5 HOH 2 402 80 HOH HOH A . M 5 HOH 3 403 48 HOH HOH A . M 5 HOH 4 404 119 HOH HOH A . M 5 HOH 5 405 57 HOH HOH A . M 5 HOH 6 406 15 HOH HOH A . M 5 HOH 7 407 47 HOH HOH A . M 5 HOH 8 408 9 HOH HOH A . M 5 HOH 9 409 51 HOH HOH A . M 5 HOH 10 410 22 HOH HOH A . M 5 HOH 11 411 8 HOH HOH A . M 5 HOH 12 412 18 HOH HOH A . M 5 HOH 13 413 78 HOH HOH A . M 5 HOH 14 414 77 HOH HOH A . M 5 HOH 15 415 67 HOH HOH A . M 5 HOH 16 416 41 HOH HOH A . M 5 HOH 17 417 24 HOH HOH A . M 5 HOH 18 418 20 HOH HOH A . M 5 HOH 19 419 5 HOH HOH A . M 5 HOH 20 420 65 HOH HOH A . M 5 HOH 21 421 60 HOH HOH A . M 5 HOH 22 422 17 HOH HOH A . M 5 HOH 23 423 38 HOH HOH A . M 5 HOH 24 424 2 HOH HOH A . M 5 HOH 25 425 26 HOH HOH A . M 5 HOH 26 426 43 HOH HOH A . M 5 HOH 27 427 39 HOH HOH A . M 5 HOH 28 428 25 HOH HOH A . M 5 HOH 29 429 3 HOH HOH A . M 5 HOH 30 430 75 HOH HOH A . M 5 HOH 31 431 55 HOH HOH A . M 5 HOH 32 432 21 HOH HOH A . M 5 HOH 33 433 116 HOH HOH A . M 5 HOH 34 434 12 HOH HOH A . M 5 HOH 35 435 32 HOH HOH A . M 5 HOH 36 436 88 HOH HOH A . M 5 HOH 37 437 109 HOH HOH A . M 5 HOH 38 438 63 HOH HOH A . M 5 HOH 39 439 42 HOH HOH A . M 5 HOH 40 440 61 HOH HOH A . M 5 HOH 41 441 113 HOH HOH A . M 5 HOH 42 442 135 HOH HOH A . M 5 HOH 43 443 84 HOH HOH A . M 5 HOH 44 444 14 HOH HOH A . M 5 HOH 45 445 66 HOH HOH A . M 5 HOH 46 446 90 HOH HOH A . M 5 HOH 47 447 11 HOH HOH A . M 5 HOH 48 448 44 HOH HOH A . M 5 HOH 49 449 16 HOH HOH A . M 5 HOH 50 450 62 HOH HOH A . M 5 HOH 51 451 59 HOH HOH A . M 5 HOH 52 452 49 HOH HOH A . M 5 HOH 53 453 108 HOH HOH A . M 5 HOH 54 454 82 HOH HOH A . M 5 HOH 55 455 114 HOH HOH A . M 5 HOH 56 456 85 HOH HOH A . M 5 HOH 57 457 126 HOH HOH A . M 5 HOH 58 458 36 HOH HOH A . M 5 HOH 59 459 120 HOH HOH A . M 5 HOH 60 460 140 HOH HOH A . M 5 HOH 61 461 96 HOH HOH A . M 5 HOH 62 462 86 HOH HOH A . M 5 HOH 63 463 93 HOH HOH A . M 5 HOH 64 464 136 HOH HOH A . M 5 HOH 65 465 56 HOH HOH A . M 5 HOH 66 466 121 HOH HOH A . M 5 HOH 67 467 70 HOH HOH A . M 5 HOH 68 468 110 HOH HOH A . N 5 HOH 1 401 124 HOH HOH B . N 5 HOH 2 402 138 HOH HOH B . N 5 HOH 3 403 30 HOH HOH B . N 5 HOH 4 404 139 HOH HOH B . N 5 HOH 5 405 74 HOH HOH B . N 5 HOH 6 406 53 HOH HOH B . N 5 HOH 7 407 117 HOH HOH B . N 5 HOH 8 408 10 HOH HOH B . N 5 HOH 9 409 58 HOH HOH B . N 5 HOH 10 410 31 HOH HOH B . N 5 HOH 11 411 127 HOH HOH B . N 5 HOH 12 412 45 HOH HOH B . N 5 HOH 13 413 87 HOH HOH B . N 5 HOH 14 414 123 HOH HOH B . N 5 HOH 15 415 29 HOH HOH B . N 5 HOH 16 416 105 HOH HOH B . N 5 HOH 17 417 40 HOH HOH B . N 5 HOH 18 418 129 HOH HOH B . N 5 HOH 19 419 28 HOH HOH B . N 5 HOH 20 420 71 HOH HOH B . N 5 HOH 21 421 101 HOH HOH B . N 5 HOH 22 422 54 HOH HOH B . N 5 HOH 23 423 69 HOH HOH B . N 5 HOH 24 424 37 HOH HOH B . N 5 HOH 25 425 100 HOH HOH B . N 5 HOH 26 426 6 HOH HOH B . N 5 HOH 27 427 1 HOH HOH B . N 5 HOH 28 428 106 HOH HOH B . N 5 HOH 29 429 107 HOH HOH B . N 5 HOH 30 430 97 HOH HOH B . N 5 HOH 31 431 131 HOH HOH B . N 5 HOH 32 432 76 HOH HOH B . N 5 HOH 33 433 27 HOH HOH B . N 5 HOH 34 434 33 HOH HOH B . N 5 HOH 35 435 50 HOH HOH B . N 5 HOH 36 436 4 HOH HOH B . N 5 HOH 37 437 23 HOH HOH B . N 5 HOH 38 438 19 HOH HOH B . N 5 HOH 39 439 98 HOH HOH B . N 5 HOH 40 440 35 HOH HOH B . N 5 HOH 41 441 34 HOH HOH B . N 5 HOH 42 442 94 HOH HOH B . N 5 HOH 43 443 132 HOH HOH B . N 5 HOH 44 444 7 HOH HOH B . N 5 HOH 45 445 125 HOH HOH B . N 5 HOH 46 446 81 HOH HOH B . N 5 HOH 47 447 64 HOH HOH B . N 5 HOH 48 448 112 HOH HOH B . N 5 HOH 49 449 79 HOH HOH B . N 5 HOH 50 450 103 HOH HOH B . N 5 HOH 51 451 104 HOH HOH B . N 5 HOH 52 452 115 HOH HOH B . N 5 HOH 53 453 130 HOH HOH B . N 5 HOH 54 454 13 HOH HOH B . N 5 HOH 55 455 46 HOH HOH B . N 5 HOH 56 456 137 HOH HOH B . N 5 HOH 57 457 72 HOH HOH B . N 5 HOH 58 458 111 HOH HOH B . N 5 HOH 59 459 73 HOH HOH B . N 5 HOH 60 460 118 HOH HOH B . N 5 HOH 61 461 133 HOH HOH B . N 5 HOH 62 462 102 HOH HOH B . N 5 HOH 63 463 52 HOH HOH B . N 5 HOH 64 464 83 HOH HOH B . N 5 HOH 65 465 134 HOH HOH B . N 5 HOH 66 466 91 HOH HOH B . N 5 HOH 67 467 128 HOH HOH B . N 5 HOH 68 468 99 HOH HOH B . N 5 HOH 69 469 92 HOH HOH B . N 5 HOH 70 470 95 HOH HOH B . N 5 HOH 71 471 89 HOH HOH B . N 5 HOH 72 472 122 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.11.1_2575: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 6RK1 _cell.details ? _cell.formula_units_Z ? _cell.length_a 52.860 _cell.length_a_esd ? _cell.length_b 52.860 _cell.length_b_esd ? _cell.length_c 102.390 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RK1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6RK1 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.20 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 61.57 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '3.0 M NaCl, 0.1 M Tris pH 8.0' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2012-07-02 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.930 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ESRF BEAMLINE ID14-4' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.930 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ID14-4 _diffrn_source.pdbx_synchrotron_site ESRF # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6RK1 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.63 _reflns.d_resolution_low 34.13 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 2082 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F 2 _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 7.6 _reflns.pdbx_Rmerge_I_obs 0.082 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 13 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.63 _reflns_shell.d_res_low 1.66 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 220 _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6RK1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.630 _refine.ls_d_res_low 34.130 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 21339 _refine.ls_number_reflns_R_free 1050 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.99 _refine.ls_percent_reflns_R_free 4.92 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1626 _refine.ls_R_factor_R_free 0.1844 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1615 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.91 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 16.02 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.15 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 710 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 15 _refine_hist.number_atoms_solvent 140 _refine_hist.number_atoms_total 865 _refine_hist.d_res_high 1.630 _refine_hist.d_res_low 34.130 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.005 ? 762 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.751 ? 1028 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 10.970 ? 506 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.044 ? 116 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.004 ? 132 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.6301 1.7043 . . 142 2491 100.00 . . . 0.2316 . 0.2144 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.7043 1.7941 . . 120 2488 100.00 . . . 0.1937 . 0.1681 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.7941 1.9065 . . 132 2508 100.00 . . . 0.1898 . 0.1556 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.9065 2.0537 . . 132 2474 100.00 . . . 0.1564 . 0.1241 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.0537 2.2603 . . 142 2508 100.00 . . . 0.1465 . 0.1375 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.2603 2.5873 . . 137 2533 100.00 . . . 0.1958 . 0.1569 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.5873 3.2593 . . 126 2571 100.00 . . . 0.1668 . 0.1658 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.2593 34.1375 . . 119 2716 100.00 . . . 0.2093 . 0.1727 . . . . . . . . . . # _struct.entry_id 6RK1 _struct.title 'Crystal structure of TSP1 domain from CCN3' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6RK1 _struct_keywords.text 'extra-cellular matrix, CCN family, matricellular protein, signalling, STRUCTURAL PROTEIN' _struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 4 ? K N N 4 ? L N N 4 ? M N N 5 ? N N N 5 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CCN3_RAT _struct_ref.pdbx_db_accession Q9QZQ5 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code DSSINCIEQTTEWSACSKSCGMGLSTRVTNRNLQCEMVKQTRLCMVRPCEQEPGE _struct_ref.pdbx_align_begin 195 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6RK1 A 4 ? 58 ? Q9QZQ5 195 ? 249 ? 195 249 2 1 6RK1 B 4 ? 58 ? Q9QZQ5 195 ? 249 ? 195 249 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6RK1 GLY A 1 ? UNP Q9QZQ5 ? ? 'expression tag' 192 1 1 6RK1 SER A 2 ? UNP Q9QZQ5 ? ? 'expression tag' 193 2 1 6RK1 MET A 3 ? UNP Q9QZQ5 ? ? 'expression tag' 194 3 2 6RK1 GLY B 1 ? UNP Q9QZQ5 ? ? 'expression tag' 192 4 2 6RK1 SER B 2 ? UNP Q9QZQ5 ? ? 'expression tag' 193 5 2 6RK1 MET B 3 ? UNP Q9QZQ5 ? ? 'expression tag' 194 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2260 ? 1 MORE -88 ? 1 'SSA (A^2)' 6910 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 9 SG ? ? ? 1_555 A CYS 38 SG ? ? A CYS 200 A CYS 229 1_555 ? ? ? ? ? ? ? 2.034 ? ? disulf2 disulf ? ? A CYS 19 SG ? ? ? 1_555 A CYS 47 SG ? ? A CYS 210 A CYS 238 1_555 ? ? ? ? ? ? ? 2.066 ? ? disulf3 disulf ? ? A CYS 23 SG ? ? ? 1_555 A CYS 52 SG ? ? A CYS 214 A CYS 243 1_555 ? ? ? ? ? ? ? 2.041 ? ? disulf4 disulf ? ? B CYS 9 SG ? ? ? 1_555 B CYS 38 SG ? ? B CYS 200 B CYS 229 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf5 disulf ? ? B CYS 19 SG ? ? ? 1_555 B CYS 47 SG ? ? B CYS 210 B CYS 238 1_555 ? ? ? ? ? ? ? 2.056 ? ? disulf6 disulf ? ? B CYS 23 SG ? ? ? 1_555 B CYS 52 SG ? ? B CYS 214 B CYS 243 1_555 ? ? ? ? ? ? ? 2.044 ? ? metalc1 metalc ? ? A GLU 11 OE1 ? ? ? 1_555 E NA . NA ? ? A GLU 202 A NA 303 1_555 ? ? ? ? ? ? ? 2.385 ? ? metalc2 metalc ? ? A THR 13 O ? ? ? 1_555 F NA . NA ? ? A THR 204 A NA 304 1_555 ? ? ? ? ? ? ? 2.466 ? ? metalc3 metalc ? ? A THR 44 O ? ? ? 1_555 D NA . NA ? ? A THR 235 A NA 302 1_555 ? ? ? ? ? ? ? 2.408 ? ? metalc4 metalc ? ? A THR 44 OG1 ? ? ? 1_555 D NA . NA ? ? A THR 235 A NA 302 1_555 ? ? ? ? ? ? ? 2.436 ? ? metalc5 metalc ? ? D NA . NA ? ? ? 1_555 M HOH . O ? ? A NA 302 A HOH 424 1_555 ? ? ? ? ? ? ? 2.466 ? ? metalc6 metalc ? ? D NA . NA ? ? ? 1_555 B THR 44 O ? ? A NA 302 B THR 235 1_555 ? ? ? ? ? ? ? 2.397 ? ? metalc7 metalc ? ? D NA . NA ? ? ? 1_555 B THR 44 OG1 ? ? A NA 302 B THR 235 1_555 ? ? ? ? ? ? ? 2.409 ? ? metalc8 metalc ? ? D NA . NA ? ? ? 1_555 N HOH . O ? ? A NA 302 B HOH 427 1_555 ? ? ? ? ? ? ? 2.433 ? ? metalc9 metalc ? ? E NA . NA ? ? ? 1_555 M HOH . O ? ? A NA 303 A HOH 417 1_555 ? ? ? ? ? ? ? 2.373 ? ? metalc10 metalc ? ? E NA . NA ? ? ? 1_555 M HOH . O ? ? A NA 303 A HOH 454 1_555 ? ? ? ? ? ? ? 2.593 ? ? metalc11 metalc ? ? E NA . NA ? ? ? 4_455 B CYS 9 O ? ? A NA 303 B CYS 200 1_555 ? ? ? ? ? ? ? 2.275 ? ? metalc12 metalc ? ? E NA . NA ? ? ? 1_555 N HOH . O ? ? A NA 303 B HOH 413 4_565 ? ? ? ? ? ? ? 2.553 ? ? metalc13 metalc ? ? E NA . NA ? ? ? 1_555 N HOH . O ? ? A NA 303 B HOH 419 4_565 ? ? ? ? ? ? ? 2.652 ? ? metalc14 metalc ? ? F NA . NA ? ? ? 1_555 M HOH . O ? ? A NA 304 A HOH 422 1_555 ? ? ? ? ? ? ? 2.435 ? ? metalc15 metalc ? ? F NA . NA ? ? ? 1_555 M HOH . O ? ? A NA 304 A HOH 426 1_555 ? ? ? ? ? ? ? 2.415 ? ? metalc16 metalc ? ? F NA . NA ? ? ? 1_555 M HOH . O ? ? A NA 304 A HOH 432 6_555 ? ? ? ? ? ? ? 2.500 ? ? metalc17 metalc ? ? F NA . NA ? ? ? 1_555 M HOH . O ? ? A NA 304 A HOH 438 6_555 ? ? ? ? ? ? ? 2.437 ? ? metalc18 metalc ? ? F NA . NA ? ? ? 1_555 M HOH . O ? ? A NA 304 A HOH 450 1_555 ? ? ? ? ? ? ? 2.545 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OE1 ? A GLU 11 ? A GLU 202 ? 1_555 NA ? E NA . ? A NA 303 ? 1_555 O ? M HOH . ? A HOH 417 ? 1_555 93.4 ? 2 OE1 ? A GLU 11 ? A GLU 202 ? 1_555 NA ? E NA . ? A NA 303 ? 1_555 O ? M HOH . ? A HOH 454 ? 1_555 105.2 ? 3 O ? M HOH . ? A HOH 417 ? 1_555 NA ? E NA . ? A NA 303 ? 1_555 O ? M HOH . ? A HOH 454 ? 1_555 75.8 ? 4 OE1 ? A GLU 11 ? A GLU 202 ? 1_555 NA ? E NA . ? A NA 303 ? 1_555 O ? B CYS 9 ? B CYS 200 ? 1_555 32.2 ? 5 O ? M HOH . ? A HOH 417 ? 1_555 NA ? E NA . ? A NA 303 ? 1_555 O ? B CYS 9 ? B CYS 200 ? 1_555 124.4 ? 6 O ? M HOH . ? A HOH 454 ? 1_555 NA ? E NA . ? A NA 303 ? 1_555 O ? B CYS 9 ? B CYS 200 ? 1_555 102.5 ? 7 OE1 ? A GLU 11 ? A GLU 202 ? 1_555 NA ? E NA . ? A NA 303 ? 1_555 O ? N HOH . ? B HOH 413 ? 4_565 160.2 ? 8 O ? M HOH . ? A HOH 417 ? 1_555 NA ? E NA . ? A NA 303 ? 1_555 O ? N HOH . ? B HOH 413 ? 4_565 106.2 ? 9 O ? M HOH . ? A HOH 454 ? 1_555 NA ? E NA . ? A NA 303 ? 1_555 O ? N HOH . ? B HOH 413 ? 4_565 77.2 ? 10 O ? B CYS 9 ? B CYS 200 ? 1_555 NA ? E NA . ? A NA 303 ? 1_555 O ? N HOH . ? B HOH 413 ? 4_565 128.0 ? 11 OE1 ? A GLU 11 ? A GLU 202 ? 1_555 NA ? E NA . ? A NA 303 ? 1_555 O ? N HOH . ? B HOH 419 ? 4_565 89.9 ? 12 O ? M HOH . ? A HOH 417 ? 1_555 NA ? E NA . ? A NA 303 ? 1_555 O ? N HOH . ? B HOH 419 ? 4_565 166.1 ? 13 O ? M HOH . ? A HOH 454 ? 1_555 NA ? E NA . ? A NA 303 ? 1_555 O ? N HOH . ? B HOH 419 ? 4_565 90.3 ? 14 O ? B CYS 9 ? B CYS 200 ? 1_555 NA ? E NA . ? A NA 303 ? 1_555 O ? N HOH . ? B HOH 419 ? 4_565 57.7 ? 15 O ? N HOH . ? B HOH 413 ? 4_565 NA ? E NA . ? A NA 303 ? 1_555 O ? N HOH . ? B HOH 419 ? 4_565 70.3 ? 16 O ? A THR 13 ? A THR 204 ? 1_555 NA ? F NA . ? A NA 304 ? 1_555 O ? M HOH . ? A HOH 422 ? 1_555 89.0 ? 17 O ? A THR 13 ? A THR 204 ? 1_555 NA ? F NA . ? A NA 304 ? 1_555 O ? M HOH . ? A HOH 426 ? 1_555 103.8 ? 18 O ? M HOH . ? A HOH 422 ? 1_555 NA ? F NA . ? A NA 304 ? 1_555 O ? M HOH . ? A HOH 426 ? 1_555 83.2 ? 19 O ? A THR 13 ? A THR 204 ? 1_555 NA ? F NA . ? A NA 304 ? 1_555 O ? M HOH . ? A HOH 432 ? 6_555 77.6 ? 20 O ? M HOH . ? A HOH 422 ? 1_555 NA ? F NA . ? A NA 304 ? 1_555 O ? M HOH . ? A HOH 432 ? 6_555 94.2 ? 21 O ? M HOH . ? A HOH 426 ? 1_555 NA ? F NA . ? A NA 304 ? 1_555 O ? M HOH . ? A HOH 432 ? 6_555 177.0 ? 22 O ? A THR 13 ? A THR 204 ? 1_555 NA ? F NA . ? A NA 304 ? 1_555 O ? M HOH . ? A HOH 438 ? 6_555 159.1 ? 23 O ? M HOH . ? A HOH 422 ? 1_555 NA ? F NA . ? A NA 304 ? 1_555 O ? M HOH . ? A HOH 438 ? 6_555 85.2 ? 24 O ? M HOH . ? A HOH 426 ? 1_555 NA ? F NA . ? A NA 304 ? 1_555 O ? M HOH . ? A HOH 438 ? 6_555 95.5 ? 25 O ? M HOH . ? A HOH 432 ? 6_555 NA ? F NA . ? A NA 304 ? 1_555 O ? M HOH . ? A HOH 438 ? 6_555 82.8 ? 26 O ? A THR 13 ? A THR 204 ? 1_555 NA ? F NA . ? A NA 304 ? 1_555 O ? M HOH . ? A HOH 450 ? 1_555 83.8 ? 27 O ? M HOH . ? A HOH 422 ? 1_555 NA ? F NA . ? A NA 304 ? 1_555 O ? M HOH . ? A HOH 450 ? 1_555 168.0 ? 28 O ? M HOH . ? A HOH 426 ? 1_555 NA ? F NA . ? A NA 304 ? 1_555 O ? M HOH . ? A HOH 450 ? 1_555 89.3 ? 29 O ? M HOH . ? A HOH 432 ? 6_555 NA ? F NA . ? A NA 304 ? 1_555 O ? M HOH . ? A HOH 450 ? 1_555 93.6 ? 30 O ? M HOH . ? A HOH 438 ? 6_555 NA ? F NA . ? A NA 304 ? 1_555 O ? M HOH . ? A HOH 450 ? 1_555 104.8 ? 31 O ? A THR 44 ? A THR 235 ? 1_555 NA ? D NA . ? A NA 302 ? 1_555 OG1 ? A THR 44 ? A THR 235 ? 1_555 78.2 ? 32 O ? A THR 44 ? A THR 235 ? 1_555 NA ? D NA . ? A NA 302 ? 1_555 O ? M HOH . ? A HOH 424 ? 1_555 87.9 ? 33 OG1 ? A THR 44 ? A THR 235 ? 1_555 NA ? D NA . ? A NA 302 ? 1_555 O ? M HOH . ? A HOH 424 ? 1_555 93.4 ? 34 O ? A THR 44 ? A THR 235 ? 1_555 NA ? D NA . ? A NA 302 ? 1_555 O ? B THR 44 ? B THR 235 ? 1_555 114.9 ? 35 OG1 ? A THR 44 ? A THR 235 ? 1_555 NA ? D NA . ? A NA 302 ? 1_555 O ? B THR 44 ? B THR 235 ? 1_555 166.9 ? 36 O ? M HOH . ? A HOH 424 ? 1_555 NA ? D NA . ? A NA 302 ? 1_555 O ? B THR 44 ? B THR 235 ? 1_555 86.4 ? 37 O ? A THR 44 ? A THR 235 ? 1_555 NA ? D NA . ? A NA 302 ? 1_555 OG1 ? B THR 44 ? B THR 235 ? 1_555 166.3 ? 38 OG1 ? A THR 44 ? A THR 235 ? 1_555 NA ? D NA . ? A NA 302 ? 1_555 OG1 ? B THR 44 ? B THR 235 ? 1_555 88.4 ? 39 O ? M HOH . ? A HOH 424 ? 1_555 NA ? D NA . ? A NA 302 ? 1_555 OG1 ? B THR 44 ? B THR 235 ? 1_555 90.4 ? 40 O ? B THR 44 ? B THR 235 ? 1_555 NA ? D NA . ? A NA 302 ? 1_555 OG1 ? B THR 44 ? B THR 235 ? 1_555 78.5 ? 41 O ? A THR 44 ? A THR 235 ? 1_555 NA ? D NA . ? A NA 302 ? 1_555 O ? N HOH . ? B HOH 427 ? 1_555 88.0 ? 42 OG1 ? A THR 44 ? A THR 235 ? 1_555 NA ? D NA . ? A NA 302 ? 1_555 O ? N HOH . ? B HOH 427 ? 1_555 93.3 ? 43 O ? M HOH . ? A HOH 424 ? 1_555 NA ? D NA . ? A NA 302 ? 1_555 O ? N HOH . ? B HOH 427 ? 1_555 171.3 ? 44 O ? B THR 44 ? B THR 235 ? 1_555 NA ? D NA . ? A NA 302 ? 1_555 O ? N HOH . ? B HOH 427 ? 1_555 88.3 ? 45 OG1 ? B THR 44 ? B THR 235 ? 1_555 NA ? D NA . ? A NA 302 ? 1_555 O ? N HOH . ? B HOH 427 ? 1_555 95.4 ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 CYS A 9 ? CYS A 38 ? CYS A 200 ? 1_555 CYS A 229 ? 1_555 SG SG . . . None 'Disulfide bridge' 2 CYS A 19 ? CYS A 47 ? CYS A 210 ? 1_555 CYS A 238 ? 1_555 SG SG . . . None 'Disulfide bridge' 3 CYS A 23 ? CYS A 52 ? CYS A 214 ? 1_555 CYS A 243 ? 1_555 SG SG . . . None 'Disulfide bridge' 4 CYS B 9 ? CYS B 38 ? CYS B 200 ? 1_555 CYS B 229 ? 1_555 SG SG . . . None 'Disulfide bridge' 5 CYS B 19 ? CYS B 47 ? CYS B 210 ? 1_555 CYS B 238 ? 1_555 SG SG . . . None 'Disulfide bridge' 6 CYS B 23 ? CYS B 52 ? CYS B 214 ? 1_555 CYS B 243 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 MET A 25 ? THR A 32 ? MET A 216 THR A 223 AA1 2 VAL A 41 ? MET A 48 ? VAL A 232 MET A 239 AA2 1 MET B 25 ? THR B 32 ? MET B 216 THR B 223 AA2 2 VAL B 41 ? MET B 48 ? VAL B 232 MET B 239 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N GLY A 26 ? N GLY A 217 O CYS A 47 ? O CYS A 238 AA2 1 2 N GLY B 26 ? N GLY B 217 O CYS B 47 ? O CYS B 238 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A GOL 301 ? 8 'binding site for residue GOL A 301' AC2 Software A NA 302 ? 4 'binding site for residue NA A 302' AC3 Software A NA 303 ? 6 'binding site for residue NA A 303' AC4 Software A NA 304 ? 6 'binding site for residue NA A 304' AC5 Software A CL 305 ? 2 'binding site for residue CL A 305' AC6 Software A CL 306 ? 4 'binding site for residue CL A 306' AC7 Software A CL 307 ? 6 'binding site for residue CL A 307' AC8 Software A CL 308 ? 3 'binding site for residue CL A 308' AC9 Software B CL 301 ? 3 'binding site for residue CL B 301' AD1 Software B CL 302 ? 2 'binding site for residue CL B 302' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 CYS A 9 ? CYS A 200 . ? 1_555 ? 2 AC1 8 ILE A 10 ? ILE A 201 . ? 1_555 ? 3 AC1 8 GLN A 12 ? GLN A 203 . ? 1_555 ? 4 AC1 8 THR A 29 ? THR A 220 . ? 6_555 ? 5 AC1 8 CYS A 38 ? CYS A 229 . ? 1_555 ? 6 AC1 8 LYS A 42 ? LYS A 233 . ? 6_555 ? 7 AC1 8 HOH M . ? HOH A 411 . ? 1_555 ? 8 AC1 8 HOH M . ? HOH A 418 . ? 1_555 ? 9 AC2 4 THR A 44 ? THR A 235 . ? 1_555 ? 10 AC2 4 HOH M . ? HOH A 424 . ? 1_555 ? 11 AC2 4 THR B 44 ? THR B 235 . ? 1_555 ? 12 AC2 4 HOH N . ? HOH B 427 . ? 1_555 ? 13 AC3 6 GLU A 11 ? GLU A 202 . ? 1_555 ? 14 AC3 6 HOH M . ? HOH A 417 . ? 1_555 ? 15 AC3 6 HOH M . ? HOH A 454 . ? 1_555 ? 16 AC3 6 CYS B 9 ? CYS B 200 . ? 4_565 ? 17 AC3 6 HOH N . ? HOH B 413 . ? 4_565 ? 18 AC3 6 HOH N . ? HOH B 419 . ? 4_565 ? 19 AC4 6 THR A 13 ? THR A 204 . ? 1_555 ? 20 AC4 6 HOH M . ? HOH A 422 . ? 1_555 ? 21 AC4 6 HOH M . ? HOH A 426 . ? 1_555 ? 22 AC4 6 HOH M . ? HOH A 432 . ? 6_555 ? 23 AC4 6 HOH M . ? HOH A 438 . ? 6_555 ? 24 AC4 6 HOH M . ? HOH A 450 . ? 1_555 ? 25 AC5 2 GLU A 15 ? GLU A 206 . ? 1_555 ? 26 AC5 2 TRP A 16 ? TRP A 207 . ? 1_555 ? 27 AC6 4 GLN A 43 ? GLN A 234 . ? 1_555 ? 28 AC6 4 ARG A 45 ? ARG A 236 . ? 1_555 ? 29 AC6 4 PRO A 51 ? PRO A 242 . ? 4_565 ? 30 AC6 4 LEU B 46 ? LEU B 237 . ? 1_555 ? 31 AC7 6 GLN A 37 ? GLN A 228 . ? 1_555 ? 32 AC7 6 HOH M . ? HOH A 447 . ? 1_555 ? 33 AC7 6 GLY B 24 ? GLY B 215 . ? 1_555 ? 34 AC7 6 PRO B 51 ? PRO B 242 . ? 1_555 ? 35 AC7 6 CYS B 52 ? CYS B 243 . ? 1_555 ? 36 AC7 6 HOH N . ? HOH B 434 . ? 1_555 ? 37 AC8 3 GLU A 11 ? GLU A 202 . ? 1_555 ? 38 AC8 3 HOH M . ? HOH A 458 . ? 6_555 ? 39 AC8 3 GLU B 11 ? GLU B 202 . ? 4_565 ? 40 AC9 3 LEU A 46 ? LEU A 237 . ? 1_555 ? 41 AC9 3 GLN B 43 ? GLN B 234 . ? 1_555 ? 42 AC9 3 ARG B 45 ? ARG B 236 . ? 1_555 ? 43 AD1 2 GLU B 15 ? GLU B 206 . ? 1_555 ? 44 AD1 2 TRP B 16 ? TRP B 207 . ? 1_555 ? # _pdbx_entry_details.entry_id 6RK1 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 464 ? ? O B HOH 468 ? ? 1.84 2 1 O A HOH 415 ? ? O A HOH 446 ? ? 1.97 3 1 O A HOH 433 ? ? O A HOH 455 ? ? 1.97 4 1 O B HOH 402 ? ? O B HOH 458 ? ? 2.08 5 1 O B HOH 407 ? ? O B HOH 429 ? ? 2.19 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 461 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id M _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id B _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 472 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 5.93 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 192 ? A GLY 1 2 1 Y 1 A SER 193 ? A SER 2 3 1 Y 1 A MET 194 ? A MET 3 4 1 Y 1 A ASP 195 ? A ASP 4 5 1 Y 1 A SER 196 ? A SER 5 6 1 Y 1 A SER 197 ? A SER 6 7 1 Y 1 A ILE 198 ? A ILE 7 8 1 Y 1 A GLN 245 ? A GLN 54 9 1 Y 1 A GLU 246 ? A GLU 55 10 1 Y 1 A PRO 247 ? A PRO 56 11 1 Y 1 A GLY 248 ? A GLY 57 12 1 Y 1 A GLU 249 ? A GLU 58 13 1 Y 1 B GLY 192 ? B GLY 1 14 1 Y 1 B SER 193 ? B SER 2 15 1 Y 1 B MET 194 ? B MET 3 16 1 Y 1 B ASP 195 ? B ASP 4 17 1 Y 1 B SER 196 ? B SER 5 18 1 Y 1 B SER 197 ? B SER 6 19 1 Y 1 B ILE 198 ? B ILE 7 20 1 Y 1 B GLN 245 ? B GLN 54 21 1 Y 1 B GLU 246 ? B GLU 55 22 1 Y 1 B PRO 247 ? B PRO 56 23 1 Y 1 B GLY 248 ? B GLY 57 24 1 Y 1 B GLU 249 ? B GLU 58 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CL CL CL N N 74 CYS N N N N 75 CYS CA C N R 76 CYS C C N N 77 CYS O O N N 78 CYS CB C N N 79 CYS SG S N N 80 CYS OXT O N N 81 CYS H H N N 82 CYS H2 H N N 83 CYS HA H N N 84 CYS HB2 H N N 85 CYS HB3 H N N 86 CYS HG H N N 87 CYS HXT H N N 88 GLN N N N N 89 GLN CA C N S 90 GLN C C N N 91 GLN O O N N 92 GLN CB C N N 93 GLN CG C N N 94 GLN CD C N N 95 GLN OE1 O N N 96 GLN NE2 N N N 97 GLN OXT O N N 98 GLN H H N N 99 GLN H2 H N N 100 GLN HA H N N 101 GLN HB2 H N N 102 GLN HB3 H N N 103 GLN HG2 H N N 104 GLN HG3 H N N 105 GLN HE21 H N N 106 GLN HE22 H N N 107 GLN HXT H N N 108 GLU N N N N 109 GLU CA C N S 110 GLU C C N N 111 GLU O O N N 112 GLU CB C N N 113 GLU CG C N N 114 GLU CD C N N 115 GLU OE1 O N N 116 GLU OE2 O N N 117 GLU OXT O N N 118 GLU H H N N 119 GLU H2 H N N 120 GLU HA H N N 121 GLU HB2 H N N 122 GLU HB3 H N N 123 GLU HG2 H N N 124 GLU HG3 H N N 125 GLU HE2 H N N 126 GLU HXT H N N 127 GLY N N N N 128 GLY CA C N N 129 GLY C C N N 130 GLY O O N N 131 GLY OXT O N N 132 GLY H H N N 133 GLY H2 H N N 134 GLY HA2 H N N 135 GLY HA3 H N N 136 GLY HXT H N N 137 GOL C1 C N N 138 GOL O1 O N N 139 GOL C2 C N N 140 GOL O2 O N N 141 GOL C3 C N N 142 GOL O3 O N N 143 GOL H11 H N N 144 GOL H12 H N N 145 GOL HO1 H N N 146 GOL H2 H N N 147 GOL HO2 H N N 148 GOL H31 H N N 149 GOL H32 H N N 150 GOL HO3 H N N 151 HOH O O N N 152 HOH H1 H N N 153 HOH H2 H N N 154 ILE N N N N 155 ILE CA C N S 156 ILE C C N N 157 ILE O O N N 158 ILE CB C N S 159 ILE CG1 C N N 160 ILE CG2 C N N 161 ILE CD1 C N N 162 ILE OXT O N N 163 ILE H H N N 164 ILE H2 H N N 165 ILE HA H N N 166 ILE HB H N N 167 ILE HG12 H N N 168 ILE HG13 H N N 169 ILE HG21 H N N 170 ILE HG22 H N N 171 ILE HG23 H N N 172 ILE HD11 H N N 173 ILE HD12 H N N 174 ILE HD13 H N N 175 ILE HXT H N N 176 LEU N N N N 177 LEU CA C N S 178 LEU C C N N 179 LEU O O N N 180 LEU CB C N N 181 LEU CG C N N 182 LEU CD1 C N N 183 LEU CD2 C N N 184 LEU OXT O N N 185 LEU H H N N 186 LEU H2 H N N 187 LEU HA H N N 188 LEU HB2 H N N 189 LEU HB3 H N N 190 LEU HG H N N 191 LEU HD11 H N N 192 LEU HD12 H N N 193 LEU HD13 H N N 194 LEU HD21 H N N 195 LEU HD22 H N N 196 LEU HD23 H N N 197 LEU HXT H N N 198 LYS N N N N 199 LYS CA C N S 200 LYS C C N N 201 LYS O O N N 202 LYS CB C N N 203 LYS CG C N N 204 LYS CD C N N 205 LYS CE C N N 206 LYS NZ N N N 207 LYS OXT O N N 208 LYS H H N N 209 LYS H2 H N N 210 LYS HA H N N 211 LYS HB2 H N N 212 LYS HB3 H N N 213 LYS HG2 H N N 214 LYS HG3 H N N 215 LYS HD2 H N N 216 LYS HD3 H N N 217 LYS HE2 H N N 218 LYS HE3 H N N 219 LYS HZ1 H N N 220 LYS HZ2 H N N 221 LYS HZ3 H N N 222 LYS HXT H N N 223 MET N N N N 224 MET CA C N S 225 MET C C N N 226 MET O O N N 227 MET CB C N N 228 MET CG C N N 229 MET SD S N N 230 MET CE C N N 231 MET OXT O N N 232 MET H H N N 233 MET H2 H N N 234 MET HA H N N 235 MET HB2 H N N 236 MET HB3 H N N 237 MET HG2 H N N 238 MET HG3 H N N 239 MET HE1 H N N 240 MET HE2 H N N 241 MET HE3 H N N 242 MET HXT H N N 243 NA NA NA N N 244 PRO N N N N 245 PRO CA C N S 246 PRO C C N N 247 PRO O O N N 248 PRO CB C N N 249 PRO CG C N N 250 PRO CD C N N 251 PRO OXT O N N 252 PRO H H N N 253 PRO HA H N N 254 PRO HB2 H N N 255 PRO HB3 H N N 256 PRO HG2 H N N 257 PRO HG3 H N N 258 PRO HD2 H N N 259 PRO HD3 H N N 260 PRO HXT H N N 261 SER N N N N 262 SER CA C N S 263 SER C C N N 264 SER O O N N 265 SER CB C N N 266 SER OG O N N 267 SER OXT O N N 268 SER H H N N 269 SER H2 H N N 270 SER HA H N N 271 SER HB2 H N N 272 SER HB3 H N N 273 SER HG H N N 274 SER HXT H N N 275 THR N N N N 276 THR CA C N S 277 THR C C N N 278 THR O O N N 279 THR CB C N R 280 THR OG1 O N N 281 THR CG2 C N N 282 THR OXT O N N 283 THR H H N N 284 THR H2 H N N 285 THR HA H N N 286 THR HB H N N 287 THR HG1 H N N 288 THR HG21 H N N 289 THR HG22 H N N 290 THR HG23 H N N 291 THR HXT H N N 292 TRP N N N N 293 TRP CA C N S 294 TRP C C N N 295 TRP O O N N 296 TRP CB C N N 297 TRP CG C Y N 298 TRP CD1 C Y N 299 TRP CD2 C Y N 300 TRP NE1 N Y N 301 TRP CE2 C Y N 302 TRP CE3 C Y N 303 TRP CZ2 C Y N 304 TRP CZ3 C Y N 305 TRP CH2 C Y N 306 TRP OXT O N N 307 TRP H H N N 308 TRP H2 H N N 309 TRP HA H N N 310 TRP HB2 H N N 311 TRP HB3 H N N 312 TRP HD1 H N N 313 TRP HE1 H N N 314 TRP HE3 H N N 315 TRP HZ2 H N N 316 TRP HZ3 H N N 317 TRP HH2 H N N 318 TRP HXT H N N 319 VAL N N N N 320 VAL CA C N S 321 VAL C C N N 322 VAL O O N N 323 VAL CB C N N 324 VAL CG1 C N N 325 VAL CG2 C N N 326 VAL OXT O N N 327 VAL H H N N 328 VAL H2 H N N 329 VAL HA H N N 330 VAL HB H N N 331 VAL HG11 H N N 332 VAL HG12 H N N 333 VAL HG13 H N N 334 VAL HG21 H N N 335 VAL HG22 H N N 336 VAL HG23 H N N 337 VAL HXT H N N 338 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 GOL C1 O1 sing N N 129 GOL C1 C2 sing N N 130 GOL C1 H11 sing N N 131 GOL C1 H12 sing N N 132 GOL O1 HO1 sing N N 133 GOL C2 O2 sing N N 134 GOL C2 C3 sing N N 135 GOL C2 H2 sing N N 136 GOL O2 HO2 sing N N 137 GOL C3 O3 sing N N 138 GOL C3 H31 sing N N 139 GOL C3 H32 sing N N 140 GOL O3 HO3 sing N N 141 HOH O H1 sing N N 142 HOH O H2 sing N N 143 ILE N CA sing N N 144 ILE N H sing N N 145 ILE N H2 sing N N 146 ILE CA C sing N N 147 ILE CA CB sing N N 148 ILE CA HA sing N N 149 ILE C O doub N N 150 ILE C OXT sing N N 151 ILE CB CG1 sing N N 152 ILE CB CG2 sing N N 153 ILE CB HB sing N N 154 ILE CG1 CD1 sing N N 155 ILE CG1 HG12 sing N N 156 ILE CG1 HG13 sing N N 157 ILE CG2 HG21 sing N N 158 ILE CG2 HG22 sing N N 159 ILE CG2 HG23 sing N N 160 ILE CD1 HD11 sing N N 161 ILE CD1 HD12 sing N N 162 ILE CD1 HD13 sing N N 163 ILE OXT HXT sing N N 164 LEU N CA sing N N 165 LEU N H sing N N 166 LEU N H2 sing N N 167 LEU CA C sing N N 168 LEU CA CB sing N N 169 LEU CA HA sing N N 170 LEU C O doub N N 171 LEU C OXT sing N N 172 LEU CB CG sing N N 173 LEU CB HB2 sing N N 174 LEU CB HB3 sing N N 175 LEU CG CD1 sing N N 176 LEU CG CD2 sing N N 177 LEU CG HG sing N N 178 LEU CD1 HD11 sing N N 179 LEU CD1 HD12 sing N N 180 LEU CD1 HD13 sing N N 181 LEU CD2 HD21 sing N N 182 LEU CD2 HD22 sing N N 183 LEU CD2 HD23 sing N N 184 LEU OXT HXT sing N N 185 LYS N CA sing N N 186 LYS N H sing N N 187 LYS N H2 sing N N 188 LYS CA C sing N N 189 LYS CA CB sing N N 190 LYS CA HA sing N N 191 LYS C O doub N N 192 LYS C OXT sing N N 193 LYS CB CG sing N N 194 LYS CB HB2 sing N N 195 LYS CB HB3 sing N N 196 LYS CG CD sing N N 197 LYS CG HG2 sing N N 198 LYS CG HG3 sing N N 199 LYS CD CE sing N N 200 LYS CD HD2 sing N N 201 LYS CD HD3 sing N N 202 LYS CE NZ sing N N 203 LYS CE HE2 sing N N 204 LYS CE HE3 sing N N 205 LYS NZ HZ1 sing N N 206 LYS NZ HZ2 sing N N 207 LYS NZ HZ3 sing N N 208 LYS OXT HXT sing N N 209 MET N CA sing N N 210 MET N H sing N N 211 MET N H2 sing N N 212 MET CA C sing N N 213 MET CA CB sing N N 214 MET CA HA sing N N 215 MET C O doub N N 216 MET C OXT sing N N 217 MET CB CG sing N N 218 MET CB HB2 sing N N 219 MET CB HB3 sing N N 220 MET CG SD sing N N 221 MET CG HG2 sing N N 222 MET CG HG3 sing N N 223 MET SD CE sing N N 224 MET CE HE1 sing N N 225 MET CE HE2 sing N N 226 MET CE HE3 sing N N 227 MET OXT HXT sing N N 228 PRO N CA sing N N 229 PRO N CD sing N N 230 PRO N H sing N N 231 PRO CA C sing N N 232 PRO CA CB sing N N 233 PRO CA HA sing N N 234 PRO C O doub N N 235 PRO C OXT sing N N 236 PRO CB CG sing N N 237 PRO CB HB2 sing N N 238 PRO CB HB3 sing N N 239 PRO CG CD sing N N 240 PRO CG HG2 sing N N 241 PRO CG HG3 sing N N 242 PRO CD HD2 sing N N 243 PRO CD HD3 sing N N 244 PRO OXT HXT sing N N 245 SER N CA sing N N 246 SER N H sing N N 247 SER N H2 sing N N 248 SER CA C sing N N 249 SER CA CB sing N N 250 SER CA HA sing N N 251 SER C O doub N N 252 SER C OXT sing N N 253 SER CB OG sing N N 254 SER CB HB2 sing N N 255 SER CB HB3 sing N N 256 SER OG HG sing N N 257 SER OXT HXT sing N N 258 THR N CA sing N N 259 THR N H sing N N 260 THR N H2 sing N N 261 THR CA C sing N N 262 THR CA CB sing N N 263 THR CA HA sing N N 264 THR C O doub N N 265 THR C OXT sing N N 266 THR CB OG1 sing N N 267 THR CB CG2 sing N N 268 THR CB HB sing N N 269 THR OG1 HG1 sing N N 270 THR CG2 HG21 sing N N 271 THR CG2 HG22 sing N N 272 THR CG2 HG23 sing N N 273 THR OXT HXT sing N N 274 TRP N CA sing N N 275 TRP N H sing N N 276 TRP N H2 sing N N 277 TRP CA C sing N N 278 TRP CA CB sing N N 279 TRP CA HA sing N N 280 TRP C O doub N N 281 TRP C OXT sing N N 282 TRP CB CG sing N N 283 TRP CB HB2 sing N N 284 TRP CB HB3 sing N N 285 TRP CG CD1 doub Y N 286 TRP CG CD2 sing Y N 287 TRP CD1 NE1 sing Y N 288 TRP CD1 HD1 sing N N 289 TRP CD2 CE2 doub Y N 290 TRP CD2 CE3 sing Y N 291 TRP NE1 CE2 sing Y N 292 TRP NE1 HE1 sing N N 293 TRP CE2 CZ2 sing Y N 294 TRP CE3 CZ3 doub Y N 295 TRP CE3 HE3 sing N N 296 TRP CZ2 CH2 doub Y N 297 TRP CZ2 HZ2 sing N N 298 TRP CZ3 CH2 sing Y N 299 TRP CZ3 HZ3 sing N N 300 TRP CH2 HH2 sing N N 301 TRP OXT HXT sing N N 302 VAL N CA sing N N 303 VAL N H sing N N 304 VAL N H2 sing N N 305 VAL CA C sing N N 306 VAL CA CB sing N N 307 VAL CA HA sing N N 308 VAL C O doub N N 309 VAL C OXT sing N N 310 VAL CB CG1 sing N N 311 VAL CB CG2 sing N N 312 VAL CB HB sing N N 313 VAL CG1 HG11 sing N N 314 VAL CG1 HG12 sing N N 315 VAL CG1 HG13 sing N N 316 VAL CG2 HG21 sing N N 317 VAL CG2 HG22 sing N N 318 VAL CG2 HG23 sing N N 319 VAL OXT HXT sing N N 320 # _atom_sites.entry_id 6RK1 _atom_sites.fract_transf_matrix[1][1] 0.018918 _atom_sites.fract_transf_matrix[1][2] 0.010922 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021845 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009767 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N NA O S # loop_