HEADER STRUCTURAL PROTEIN 30-APR-19 6RK3 TITLE SOLUTION STRUCTURE OF THE RIBOSOME ELONGATION FACTOR P (EF-P) FROM TITLE 2 STAPHYLOCOCCUS AUREUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ELONGATION FACTOR P; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EF-P; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: EFP, EFP_1, BN1321_260166, BTN44_04530, CSC83_09570, SOURCE 5 CSC87_09360, CV021_16705, EP54_01240, EQ90_12570, ERS072840_00894, SOURCE 6 HMPREF3211_01680, M1K003_1282, NCTC10654_01594, NCTC13131_01960, SOURCE 7 NCTC13196_02506, NCTC6133_02039, NCTC7878_01463, RK64_08215, SOURCE 8 SAMEA1466939_00955, SAMEA1708674_01996; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS EF-P, STAPHYLOCOCCUS AUREUS, RIBOSOME, STRUCTURAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR K.USACHEV,B.FATKHULLIN,A.GABDULKHAKOV,I.KHUSAINOV,A.GOLUBEV, AUTHOR 2 S.VALIDOV,G.YUSUPOVA,M.YUSUPOV REVDAT 3 03-JUN-20 6RK3 1 JRNL REVDAT 2 18-MAR-20 6RK3 1 JRNL REVDAT 1 11-MAR-20 6RK3 0 JRNL AUTH A.GOLUBEV,B.FATKHULLIN,A.GABDULKHAKOV,A.BIKMULLIN, JRNL AUTH 2 L.NURULLINA,N.GARAEVA,D.ISLAMOV,E.KLOCHKOVA,V.KLOCHKOV, JRNL AUTH 3 A.AGANOV,I.KHUSAINOV,S.VALIDOV,G.YUSUPOVA,M.YUSUPOV, JRNL AUTH 4 K.USACHEV JRNL TITL NMR AND CRYSTALLOGRAPHIC STRUCTURAL STUDIES OF THE JRNL TITL 2 ELONGATION FACTOR P FROM STAPHYLOCOCCUS AUREUS. JRNL REF EUR.BIOPHYS.J. V. 49 223 2020 JRNL REFN ISSN 0175-7571 JRNL PMID 32152681 JRNL DOI 10.1007/S00249-020-01428-X REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, CNS REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6RK3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-APR-19. REMARK 100 THE DEPOSITION ID IS D_1292102060. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.3 MM [U-13C; U-15N] SAEF-P, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-13C NOESY ALIPHATIC; 3D 1H REMARK 210 -15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ2 LYS A 99 OE2 GLU A 100 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 24 113.78 -162.71 REMARK 500 1 ALA A 75 -154.23 -151.27 REMARK 500 1 SER A 87 93.56 -171.85 REMARK 500 1 PHE A 88 29.37 49.79 REMARK 500 1 GLU A 135 87.81 77.37 REMARK 500 2 SER A 87 91.71 -171.43 REMARK 500 2 PHE A 88 28.05 47.41 REMARK 500 2 GLU A 135 101.65 77.52 REMARK 500 2 PRO A 138 -179.76 -69.11 REMARK 500 2 ASP A 143 -74.51 -102.23 REMARK 500 2 ALA A 145 -75.41 -129.60 REMARK 500 3 SER A 87 91.30 -169.42 REMARK 500 3 PHE A 88 28.19 47.51 REMARK 500 3 GLU A 135 108.27 75.11 REMARK 500 3 ARG A 184 136.18 -39.59 REMARK 500 4 ALA A 75 -149.55 -150.23 REMARK 500 4 SER A 87 91.65 -170.99 REMARK 500 4 PHE A 88 26.62 48.31 REMARK 500 4 LEU A 105 171.41 179.80 REMARK 500 4 GLU A 135 96.67 79.06 REMARK 500 4 ASP A 143 -173.18 62.93 REMARK 500 4 THR A 144 87.66 -153.69 REMARK 500 4 THR A 146 36.38 -150.21 REMARK 500 4 ARG A 184 30.22 72.46 REMARK 500 5 SER A 87 90.03 -164.75 REMARK 500 5 PHE A 88 28.26 47.33 REMARK 500 5 PRO A 126 127.50 -37.74 REMARK 500 5 GLU A 135 79.07 79.40 REMARK 500 5 ASP A 143 -41.10 66.24 REMARK 500 6 SER A 87 91.59 -169.09 REMARK 500 6 PHE A 88 25.32 48.42 REMARK 500 6 GLU A 135 86.61 77.36 REMARK 500 6 ALA A 145 34.01 -165.78 REMARK 500 7 SER A 87 91.87 -167.35 REMARK 500 7 PHE A 88 28.50 48.44 REMARK 500 7 GLU A 135 97.30 76.05 REMARK 500 7 ASP A 143 -67.99 67.39 REMARK 500 7 ALA A 148 153.17 68.06 REMARK 500 8 ALA A 75 -149.43 -140.21 REMARK 500 8 SER A 87 91.74 -171.15 REMARK 500 8 PHE A 88 29.86 47.99 REMARK 500 8 GLU A 135 111.49 77.77 REMARK 500 8 THR A 144 87.00 -67.75 REMARK 500 8 ALA A 145 57.62 -117.66 REMARK 500 9 SER A 87 92.46 -172.25 REMARK 500 9 PHE A 88 27.46 48.60 REMARK 500 9 GLU A 135 88.87 70.60 REMARK 500 10 SER A 87 93.95 -170.94 REMARK 500 10 GLU A 135 86.02 75.94 REMARK 500 10 THR A 146 -56.56 71.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 27503 RELATED DB: BMRB DBREF 6RK3 A 1 185 UNP W8U5N1 W8U5N1_STAAU 1 185 SEQRES 1 A 185 MET ILE SER VAL ASN ASP PHE LYS THR GLY LEU THR ILE SEQRES 2 A 185 SER VAL ASP ASN ALA ILE TRP LYS VAL ILE ASP PHE GLN SEQRES 3 A 185 HIS VAL LYS PRO GLY LYS GLY SER ALA PHE VAL ARG SER SEQRES 4 A 185 LYS LEU ARG ASN LEU ARG THR GLY ALA ILE GLN GLU LYS SEQRES 5 A 185 THR PHE ARG ALA GLY GLU LYS VAL GLU PRO ALA MET ILE SEQRES 6 A 185 GLU ASN ARG ARG MET GLN TYR LEU TYR ALA ASP GLY ASP SEQRES 7 A 185 ASN HIS VAL PHE MET ASP ASN GLU SER PHE GLU GLN THR SEQRES 8 A 185 GLU LEU SER SER ASP TYR LEU LYS GLU GLU LEU ASN TYR SEQRES 9 A 185 LEU LYS GLU GLY MET GLU VAL GLN ILE GLN THR TYR GLU SEQRES 10 A 185 GLY GLU THR ILE GLY VAL GLU LEU PRO LYS THR VAL GLU SEQRES 11 A 185 LEU THR VAL THR GLU THR GLU PRO GLY ILE LYS GLY ASP SEQRES 12 A 185 THR ALA THR GLY ALA THR LYS SER ALA THR VAL GLU THR SEQRES 13 A 185 GLY TYR THR LEU ASN VAL PRO LEU PHE VAL ASN GLU GLY SEQRES 14 A 185 ASP VAL LEU ILE ILE ASN THR GLY ASP GLY SER TYR ILE SEQRES 15 A 185 SER ARG GLY HELIX 1 AA1 SER A 95 LEU A 102 1 8 SHEET 1 AA1 5 ILE A 49 ARG A 55 0 SHEET 2 AA1 5 PHE A 36 ASN A 43 -1 N SER A 39 O LYS A 52 SHEET 3 AA1 5 ALA A 18 VAL A 28 -1 N ILE A 23 O LYS A 40 SHEET 4 AA1 5 LEU A 11 VAL A 15 -1 N ILE A 13 O TRP A 20 SHEET 5 AA1 5 GLU A 61 PRO A 62 -1 O GLU A 61 N SER A 14 SHEET 1 AA2 5 GLU A 89 SER A 94 0 SHEET 2 AA2 5 ASN A 79 ASP A 84 -1 N PHE A 82 O THR A 91 SHEET 3 AA2 5 GLU A 66 TYR A 72 -1 N GLN A 71 O MET A 83 SHEET 4 AA2 5 GLU A 110 TYR A 116 -1 O THR A 115 N GLU A 66 SHEET 5 AA2 5 GLU A 119 GLU A 124 -1 O GLU A 124 N GLN A 112 SHEET 1 AA3 3 THR A 128 THR A 132 0 SHEET 2 AA3 3 VAL A 171 ASN A 175 -1 O LEU A 172 N LEU A 131 SHEET 3 AA3 3 TYR A 181 ILE A 182 -1 O ILE A 182 N ILE A 173 SHEET 1 AA4 2 THR A 149 THR A 153 0 SHEET 2 AA4 2 THR A 159 PRO A 163 -1 O LEU A 160 N ALA A 152 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1