HEADER HYDROLASE 30-APR-19 6RK6 TITLE CHARACTERIZATION OF AN INTERTIDAL ZONE METAGENOME OLIGORIBONUCLEASE TITLE 2 AND THE ROLE OF THE INTERMOLECULAR DISULFIDE BOND FOR HOMODIMER TITLE 3 FORMATION AND NUCLEASE ACTIVITY. COMPND MOL_ID: 1; COMPND 2 MOLECULE: OLIGORIBONUCLEASE; COMPND 3 CHAIN: A, B, C; COMPND 4 EC: 3.1.13.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METAGENOME; SOURCE 3 ORGANISM_TAXID: 256318; SOURCE 4 GENE: ORN; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: ROSETTA 2 KEYWDS OLIGORIBONUCLEASE, METAGENOME, RNA, HOMODIMER, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.PIOTROWSKI,K.BERG,D.P.KLEBL,I.LEIROS,A.N.LARSEN REVDAT 5 24-JAN-24 6RK6 1 REMARK REVDAT 4 23-OCT-19 6RK6 1 REMARK REVDAT 3 09-OCT-19 6RK6 1 JRNL REVDAT 2 04-SEP-19 6RK6 1 TITLE REVDAT 1 28-AUG-19 6RK6 0 JRNL AUTH Y.PIOTROWSKI,K.BERG,D.P.KLEBL,I.LEIROS,A.N.LARSEN JRNL TITL CHARACTERIZATION OF AN INTERTIDAL ZONE METAGENOME JRNL TITL 2 OLIGORIBONUCLEASE AND THE ROLE OF THE INTERMOLECULAR JRNL TITL 3 DISULFIDE BOND FOR HOMODIMER FORMATION AND NUCLEASE JRNL TITL 4 ACTIVITY. JRNL REF FEBS OPEN BIO V. 9 1674 2019 JRNL REFN ESSN 2211-5463 JRNL PMID 31420950 JRNL DOI 10.1002/2211-5463.12720 REMARK 2 REMARK 2 RESOLUTION. 3.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 12228 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.247 REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.570 REMARK 3 FREE R VALUE TEST SET COUNT : 926 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.5847 - 6.0217 0.99 1712 116 0.2113 0.2224 REMARK 3 2 6.0217 - 4.7814 1.00 1641 108 0.2239 0.2725 REMARK 3 3 4.7814 - 4.1775 1.00 1629 122 0.2153 0.2141 REMARK 3 4 4.1775 - 3.7957 1.00 1599 151 0.2501 0.2702 REMARK 3 5 3.7957 - 3.5238 1.00 1579 129 0.2872 0.3014 REMARK 3 6 3.5238 - 3.3161 1.00 1588 144 0.3195 0.3432 REMARK 3 7 3.3161 - 3.1501 1.00 1554 156 0.3600 0.3597 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.470 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 79.01 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4461 REMARK 3 ANGLE : 0.678 6031 REMARK 3 CHIRALITY : 0.043 676 REMARK 3 PLANARITY : 0.004 770 REMARK 3 DIHEDRAL : 10.587 2729 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 5 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): -60.8098 14.9986 9.9456 REMARK 3 T TENSOR REMARK 3 T11: 0.8646 T22: 0.4706 REMARK 3 T33: 0.6295 T12: -0.0207 REMARK 3 T13: 0.0629 T23: 0.0370 REMARK 3 L TENSOR REMARK 3 L11: 4.0869 L22: 0.8797 REMARK 3 L33: 4.3874 L12: -1.7646 REMARK 3 L13: -0.8452 L23: -0.1555 REMARK 3 S TENSOR REMARK 3 S11: 0.3946 S12: 0.2906 S13: -0.3584 REMARK 3 S21: 0.3569 S22: -0.2695 S23: 0.2809 REMARK 3 S31: 1.1200 S32: 0.1632 S33: -0.0848 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 48 THROUGH 130 ) REMARK 3 ORIGIN FOR THE GROUP (A): -54.0463 16.5277 10.2349 REMARK 3 T TENSOR REMARK 3 T11: 0.6599 T22: 0.6251 REMARK 3 T33: 0.7182 T12: 0.0708 REMARK 3 T13: 0.1071 T23: -0.1130 REMARK 3 L TENSOR REMARK 3 L11: 4.2433 L22: 2.5841 REMARK 3 L33: 4.6230 L12: -0.4947 REMARK 3 L13: 1.2599 L23: -1.7953 REMARK 3 S TENSOR REMARK 3 S11: 0.0264 S12: 0.1968 S13: 0.3174 REMARK 3 S21: -0.3642 S22: -0.2125 S23: -0.2948 REMARK 3 S31: 0.3332 S32: 0.4802 S33: 0.1285 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 131 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): -75.6329 19.0306 17.3481 REMARK 3 T TENSOR REMARK 3 T11: 0.6909 T22: 0.7456 REMARK 3 T33: 0.5600 T12: -0.0980 REMARK 3 T13: 0.1109 T23: -0.0649 REMARK 3 L TENSOR REMARK 3 L11: -0.0711 L22: 7.4621 REMARK 3 L33: 4.2896 L12: 0.1497 REMARK 3 L13: 0.0683 L23: -1.7388 REMARK 3 S TENSOR REMARK 3 S11: -0.0382 S12: -0.6309 S13: -0.2166 REMARK 3 S21: 1.0762 S22: 0.1597 S23: 0.2083 REMARK 3 S31: 0.0597 S32: -0.2339 S33: -0.1529 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 5 THROUGH 130 ) REMARK 3 ORIGIN FOR THE GROUP (A): -93.5520 2.7438 16.5879 REMARK 3 T TENSOR REMARK 3 T11: 0.5844 T22: 0.8924 REMARK 3 T33: 0.7910 T12: -0.2142 REMARK 3 T13: 0.0573 T23: -0.1671 REMARK 3 L TENSOR REMARK 3 L11: 3.7220 L22: 4.4237 REMARK 3 L33: 4.3859 L12: -0.4297 REMARK 3 L13: -0.1542 L23: 1.3016 REMARK 3 S TENSOR REMARK 3 S11: -0.0557 S12: -0.0703 S13: 0.3254 REMARK 3 S21: -0.3551 S22: 0.3079 S23: 0.3505 REMARK 3 S31: -0.2975 S32: 0.7903 S33: -0.1827 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 131 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): -89.7459 -16.6711 23.3100 REMARK 3 T TENSOR REMARK 3 T11: 0.6282 T22: 0.9699 REMARK 3 T33: 0.6974 T12: 0.1642 REMARK 3 T13: -0.1082 T23: -0.1045 REMARK 3 L TENSOR REMARK 3 L11: 1.6832 L22: 1.7080 REMARK 3 L33: 3.6391 L12: 1.0035 REMARK 3 L13: 1.2897 L23: -0.1222 REMARK 3 S TENSOR REMARK 3 S11: -0.0242 S12: -0.8786 S13: 0.2446 REMARK 3 S21: 0.2592 S22: 0.1816 S23: -0.4631 REMARK 3 S31: 0.1686 S32: 0.5700 S33: 0.0648 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 5 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): -66.6435 43.5399 10.8711 REMARK 3 T TENSOR REMARK 3 T11: 0.6789 T22: 0.5333 REMARK 3 T33: 0.5980 T12: 0.0635 REMARK 3 T13: 0.0227 T23: -0.1114 REMARK 3 L TENSOR REMARK 3 L11: 0.4662 L22: 2.9509 REMARK 3 L33: 5.4251 L12: 0.9220 REMARK 3 L13: 0.3512 L23: -1.1183 REMARK 3 S TENSOR REMARK 3 S11: 0.2962 S12: -0.0935 S13: 0.3931 REMARK 3 S21: 0.2731 S22: -0.2636 S23: 0.6156 REMARK 3 S31: -0.8876 S32: -0.1016 S33: 0.0675 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 48 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): -54.8412 49.4258 -1.7044 REMARK 3 T TENSOR REMARK 3 T11: 0.8832 T22: 0.4806 REMARK 3 T33: 0.6715 T12: 0.0222 REMARK 3 T13: -0.1151 T23: -0.0149 REMARK 3 L TENSOR REMARK 3 L11: 5.2375 L22: 5.3061 REMARK 3 L33: 7.1664 L12: 4.8905 REMARK 3 L13: 2.8420 L23: 0.6671 REMARK 3 S TENSOR REMARK 3 S11: -0.1649 S12: 0.3299 S13: -0.3531 REMARK 3 S21: -0.6135 S22: -0.1550 S23: -0.4338 REMARK 3 S31: -1.2071 S32: 0.3575 S33: 0.4623 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 82 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): -65.7301 38.4019 15.2088 REMARK 3 T TENSOR REMARK 3 T11: 0.7213 T22: 0.6437 REMARK 3 T33: 0.5822 T12: -0.0042 REMARK 3 T13: 0.0118 T23: -0.0525 REMARK 3 L TENSOR REMARK 3 L11: 2.8375 L22: 6.6454 REMARK 3 L33: 3.0505 L12: 1.9609 REMARK 3 L13: 1.5084 L23: -0.4301 REMARK 3 S TENSOR REMARK 3 S11: -0.1901 S12: -0.7948 S13: -0.2421 REMARK 3 S21: 0.0792 S22: -0.1993 S23: -0.1349 REMARK 3 S31: -0.7729 S32: -0.1194 S33: 0.3670 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 145 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): -80.1963 36.7402 -1.8976 REMARK 3 T TENSOR REMARK 3 T11: 1.1521 T22: 0.7657 REMARK 3 T33: 0.8511 T12: 0.1068 REMARK 3 T13: 0.0113 T23: -0.0330 REMARK 3 L TENSOR REMARK 3 L11: 0.1678 L22: 2.3209 REMARK 3 L33: 2.0108 L12: -0.5689 REMARK 3 L13: 0.3865 L23: -1.9608 REMARK 3 S TENSOR REMARK 3 S11: 0.0589 S12: 0.4476 S13: -0.3225 REMARK 3 S21: -0.3365 S22: 0.3797 S23: -0.6304 REMARK 3 S31: 0.2702 S32: -0.7167 S33: -0.5616 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 160 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): -81.0366 36.6922 7.7900 REMARK 3 T TENSOR REMARK 3 T11: 0.5749 T22: 0.8618 REMARK 3 T33: 0.7082 T12: 0.0090 REMARK 3 T13: -0.2173 T23: 0.0591 REMARK 3 L TENSOR REMARK 3 L11: 4.4312 L22: 8.5672 REMARK 3 L33: 4.9559 L12: 6.1426 REMARK 3 L13: -2.1694 L23: -2.4772 REMARK 3 S TENSOR REMARK 3 S11: 0.0366 S12: 1.2673 S13: 0.4910 REMARK 3 S21: 0.2027 S22: 0.6764 S23: 1.7620 REMARK 3 S31: 0.1140 S32: -1.1357 S33: -0.8866 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6RK6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-APR-19. REMARK 100 THE DEPOSITION ID IS D_1292102020. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : SI111 SINGLE CRYSTAL REMARK 200 OPTICS : FOCUSSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE, AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12264 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.150 REMARK 200 RESOLUTION RANGE LOW (A) : 44.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2GBZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, PH 7.0, 5% (V/V) PEG REMARK 280 8000., VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.77800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 67.55600 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 67.55600 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 33.77800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -162.48300 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 -93.80960 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 33.77800 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 1 REMARK 465 PRO A 2 REMARK 465 GLN A 3 REMARK 465 ASN A 4 REMARK 465 ASP A 182 REMARK 465 MET A 183 REMARK 465 ASN A 184 REMARK 465 VAL B 1 REMARK 465 PRO B 2 REMARK 465 GLN B 3 REMARK 465 ASN B 4 REMARK 465 ASP B 182 REMARK 465 MET B 183 REMARK 465 ASN B 184 REMARK 465 VAL C 1 REMARK 465 PRO C 2 REMARK 465 GLN C 3 REMARK 465 ASN C 4 REMARK 465 MET C 183 REMARK 465 ASN C 184 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 34 -165.14 -101.78 REMARK 500 ASP B 34 -165.10 -101.84 REMARK 500 ASP C 34 -165.12 -101.81 REMARK 500 LEU C 181 -165.36 -112.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU C 180 LEU C 181 -149.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 14 OE2 REMARK 620 2 ASP A 163 OD2 137.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 14 OE2 REMARK 620 2 ASP C 163 OD2 152.7 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN C 201 DBREF 6RK6 A 1 184 PDB 6RK6 6RK6 1 184 DBREF 6RK6 B 1 184 PDB 6RK6 6RK6 1 184 DBREF 6RK6 C 1 184 PDB 6RK6 6RK6 1 184 SEQRES 1 A 184 VAL PRO GLN ASN PRO ASN VAL LEU VAL TRP MET ASP LEU SEQRES 2 A 184 GLU MET THR GLY LEU ASP PRO GLU LYS ASP ARG ILE ILE SEQRES 3 A 184 GLU MET ALA THR ILE ILE THR ASP GLY ASP LEU ARG THR SEQRES 4 A 184 ILE ALA GLU GLY PRO VAL ILE VAL ILE HIS GLN LYS GLN SEQRES 5 A 184 GLU LEU ILE ASP GLY MET ASP GLU TRP ASN THR ARG THR SEQRES 6 A 184 HIS ASN LYS THR GLY LEU VAL THR LYS VAL LYS THR SER SEQRES 7 A 184 ARG VAL THR GLU ARG GLN ALA GLU ILE GLU THR LEU ASP SEQRES 8 A 184 PHE ILE GLN ARG HIS THR LEU LYS ASN ARG ALA PRO LEU SEQRES 9 A 184 CYS GLY ASN SER ILE CYS GLN ASP ARG ARG PHE LEU TYR SEQRES 10 A 184 LYS TYR MET PRO GLU LEU SER GLU TRP LEU HIS TYR ARG SEQRES 11 A 184 ASN VAL ASP VAL SER SER PHE LYS GLU VAL ALA ARG HIS SEQRES 12 A 184 TRP ALA PRO SER ILE LEU SER GLY PHE GLU LYS ARG ALA SEQRES 13 A 184 SER HIS GLN ALA LEU ASP ASP ILE LYS GLU SER ILE GLU SEQRES 14 A 184 GLU LEU ARG TYR TYR ARG ASN ASN LEU ILE LEU LEU ASP SEQRES 15 A 184 MET ASN SEQRES 1 B 184 VAL PRO GLN ASN PRO ASN VAL LEU VAL TRP MET ASP LEU SEQRES 2 B 184 GLU MET THR GLY LEU ASP PRO GLU LYS ASP ARG ILE ILE SEQRES 3 B 184 GLU MET ALA THR ILE ILE THR ASP GLY ASP LEU ARG THR SEQRES 4 B 184 ILE ALA GLU GLY PRO VAL ILE VAL ILE HIS GLN LYS GLN SEQRES 5 B 184 GLU LEU ILE ASP GLY MET ASP GLU TRP ASN THR ARG THR SEQRES 6 B 184 HIS ASN LYS THR GLY LEU VAL THR LYS VAL LYS THR SER SEQRES 7 B 184 ARG VAL THR GLU ARG GLN ALA GLU ILE GLU THR LEU ASP SEQRES 8 B 184 PHE ILE GLN ARG HIS THR LEU LYS ASN ARG ALA PRO LEU SEQRES 9 B 184 CYS GLY ASN SER ILE CYS GLN ASP ARG ARG PHE LEU TYR SEQRES 10 B 184 LYS TYR MET PRO GLU LEU SER GLU TRP LEU HIS TYR ARG SEQRES 11 B 184 ASN VAL ASP VAL SER SER PHE LYS GLU VAL ALA ARG HIS SEQRES 12 B 184 TRP ALA PRO SER ILE LEU SER GLY PHE GLU LYS ARG ALA SEQRES 13 B 184 SER HIS GLN ALA LEU ASP ASP ILE LYS GLU SER ILE GLU SEQRES 14 B 184 GLU LEU ARG TYR TYR ARG ASN ASN LEU ILE LEU LEU ASP SEQRES 15 B 184 MET ASN SEQRES 1 C 184 VAL PRO GLN ASN PRO ASN VAL LEU VAL TRP MET ASP LEU SEQRES 2 C 184 GLU MET THR GLY LEU ASP PRO GLU LYS ASP ARG ILE ILE SEQRES 3 C 184 GLU MET ALA THR ILE ILE THR ASP GLY ASP LEU ARG THR SEQRES 4 C 184 ILE ALA GLU GLY PRO VAL ILE VAL ILE HIS GLN LYS GLN SEQRES 5 C 184 GLU LEU ILE ASP GLY MET ASP GLU TRP ASN THR ARG THR SEQRES 6 C 184 HIS ASN LYS THR GLY LEU VAL THR LYS VAL LYS THR SER SEQRES 7 C 184 ARG VAL THR GLU ARG GLN ALA GLU ILE GLU THR LEU ASP SEQRES 8 C 184 PHE ILE GLN ARG HIS THR LEU LYS ASN ARG ALA PRO LEU SEQRES 9 C 184 CYS GLY ASN SER ILE CYS GLN ASP ARG ARG PHE LEU TYR SEQRES 10 C 184 LYS TYR MET PRO GLU LEU SER GLU TRP LEU HIS TYR ARG SEQRES 11 C 184 ASN VAL ASP VAL SER SER PHE LYS GLU VAL ALA ARG HIS SEQRES 12 C 184 TRP ALA PRO SER ILE LEU SER GLY PHE GLU LYS ARG ALA SEQRES 13 C 184 SER HIS GLN ALA LEU ASP ASP ILE LYS GLU SER ILE GLU SEQRES 14 C 184 GLU LEU ARG TYR TYR ARG ASN ASN LEU ILE LEU LEU ASP SEQRES 15 C 184 MET ASN HET MN A 201 1 HET MN B 201 1 HET MN C 201 1 HETNAM MN MANGANESE (II) ION FORMUL 4 MN 3(MN 2+) HELIX 1 AA1 LYS A 51 GLY A 57 1 7 HELIX 2 AA2 ASP A 59 THR A 69 1 11 HELIX 3 AA3 GLY A 70 SER A 78 1 9 HELIX 4 AA4 THR A 81 THR A 97 1 17 HELIX 5 AA5 SER A 108 MET A 120 1 13 HELIX 6 AA6 MET A 120 LEU A 127 1 8 HELIX 7 AA7 VAL A 134 ALA A 145 1 12 HELIX 8 AA8 ALA A 145 SER A 150 1 6 HELIX 9 AA9 GLN A 159 ILE A 179 1 21 HELIX 10 AB1 LYS B 51 GLY B 57 1 7 HELIX 11 AB2 ASP B 59 THR B 69 1 11 HELIX 12 AB3 GLY B 70 SER B 78 1 9 HELIX 13 AB4 THR B 81 THR B 97 1 17 HELIX 14 AB5 SER B 108 MET B 120 1 13 HELIX 15 AB6 MET B 120 LEU B 127 1 8 HELIX 16 AB7 VAL B 134 ALA B 145 1 12 HELIX 17 AB8 ALA B 145 SER B 150 1 6 HELIX 18 AB9 GLN B 159 ILE B 179 1 21 HELIX 19 AC1 LYS C 51 GLY C 57 1 7 HELIX 20 AC2 ASP C 59 THR C 69 1 11 HELIX 21 AC3 GLY C 70 SER C 78 1 9 HELIX 22 AC4 THR C 81 THR C 97 1 17 HELIX 23 AC5 SER C 108 MET C 120 1 13 HELIX 24 AC6 MET C 120 LEU C 127 1 8 HELIX 25 AC7 VAL C 134 ALA C 145 1 12 HELIX 26 AC8 ALA C 145 SER C 150 1 6 HELIX 27 AC9 GLN C 159 ILE C 179 1 21 SHEET 1 AA1 5 THR A 39 VAL A 47 0 SHEET 2 AA1 5 ILE A 25 THR A 33 -1 N THR A 30 O GLY A 43 SHEET 3 AA1 5 LEU A 8 MET A 15 -1 N TRP A 10 O ILE A 31 SHEET 4 AA1 5 LEU A 104 GLY A 106 1 O CYS A 105 N MET A 11 SHEET 5 AA1 5 ASN A 131 ASP A 133 1 O VAL A 132 N LEU A 104 SHEET 1 AA2 5 THR B 39 VAL B 47 0 SHEET 2 AA2 5 ILE B 25 THR B 33 -1 N THR B 30 O GLY B 43 SHEET 3 AA2 5 LEU B 8 MET B 15 -1 N TRP B 10 O ILE B 31 SHEET 4 AA2 5 LEU B 104 GLY B 106 1 O CYS B 105 N MET B 11 SHEET 5 AA2 5 ASN B 131 ASP B 133 1 O VAL B 132 N LEU B 104 SHEET 1 AA3 5 THR C 39 VAL C 47 0 SHEET 2 AA3 5 ILE C 25 THR C 33 -1 N THR C 30 O GLY C 43 SHEET 3 AA3 5 LEU C 8 MET C 15 -1 N TRP C 10 O ILE C 31 SHEET 4 AA3 5 LEU C 104 GLY C 106 1 O CYS C 105 N MET C 11 SHEET 5 AA3 5 ASN C 131 ASP C 133 1 O VAL C 132 N LEU C 104 SSBOND 1 CYS A 110 CYS C 110 1555 1555 2.04 SSBOND 2 CYS B 110 CYS B 110 1555 6345 2.03 LINK OE2 GLU A 14 MN MN A 201 1555 1555 2.73 LINK OD2 ASP A 163 MN MN A 201 1555 1555 2.45 LINK OD2 ASP B 163 MN MN B 201 1555 1555 2.37 LINK OE2 GLU C 14 MN MN C 201 1555 1555 2.40 LINK OD2 ASP C 163 MN MN C 201 1555 1555 2.56 SITE 1 AC1 4 ASP A 12 GLU A 14 ASP A 163 LYS C 68 SITE 1 AC2 3 ASP B 12 GLU B 14 ASP B 163 SITE 1 AC3 4 LYS A 68 ASP C 12 GLU C 14 ASP C 163 CRYST1 108.322 108.322 101.334 90.00 90.00 120.00 P 31 2 1 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009232 0.005330 0.000000 0.00000 SCALE2 0.000000 0.010660 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009868 0.00000