HEADER BIOSYNTHETIC PROTEIN 04-MAY-19 6RM2 TITLE DEOXYGUANYLOSUCCINATE SYNTHASE (DGSS) STRUCTURE WITH ATP, IMP, TITLE 2 MAGNESIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENYLOSUCCINATE SYNTHETASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO PHAGE PHIVC8; SOURCE 3 ORGANISM_TAXID: 1076759; SOURCE 4 GENE: PHIVC8_P27; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS 2, 6-DIAMINOPURINE, PHAGE PHIVC8, SYNTHETASE, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.SLEIMAN,J.LOC'H,A.HAOUZ,P.A.KAMINSKI REVDAT 2 24-JAN-24 6RM2 1 LINK REVDAT 1 03-JUN-20 6RM2 0 JRNL AUTH D.SLEIMAN,J.LOC'H,A.HAOUZ,P.A.KAMINSKI JRNL TITL DEOXYGUANYLOSUCCINATE SYNTHASE (DGSS) QUATERNARY STRUCTURE JRNL TITL 2 WITH ATP, IMP, MAGNESIUM AT 2.5 ANGSTROM RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 28441 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1423 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.52 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 77.13 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 569 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2966 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 540 REMARK 3 BIN R VALUE (WORKING SET) : 0.2944 REMARK 3 BIN FREE R VALUE : 0.3409 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5346 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 120 REMARK 3 SOLVENT ATOMS : 207 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 63.92 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -8.41600 REMARK 3 B22 (A**2) : -8.41600 REMARK 3 B33 (A**2) : 16.83200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.290 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.510 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.261 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.438 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.257 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.886 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5580 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7584 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1948 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 996 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5580 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 726 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6385 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.22 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.06 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.34 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 7.8677 31.1155 7.8103 REMARK 3 T TENSOR REMARK 3 T11: -0.0619 T22: -0.0496 REMARK 3 T33: -0.0704 T12: 0.0241 REMARK 3 T13: -0.0144 T23: -0.0144 REMARK 3 L TENSOR REMARK 3 L11: 0.6349 L22: 0.6970 REMARK 3 L33: 1.3964 L12: -0.0293 REMARK 3 L13: -0.2212 L23: 0.0902 REMARK 3 S TENSOR REMARK 3 S11: -0.0045 S12: -0.0146 S13: -0.0312 REMARK 3 S21: 0.0126 S22: -0.0127 S23: -0.0152 REMARK 3 S31: 0.1528 S32: 0.0391 S33: 0.0172 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 2.1254 60.7334 3.2000 REMARK 3 T TENSOR REMARK 3 T11: 0.0046 T22: -0.0550 REMARK 3 T33: -0.0529 T12: 0.0057 REMARK 3 T13: -0.0100 T23: -0.0190 REMARK 3 L TENSOR REMARK 3 L11: 0.4210 L22: 0.5430 REMARK 3 L33: 1.1562 L12: -0.0801 REMARK 3 L13: -0.0077 L23: -0.0221 REMARK 3 S TENSOR REMARK 3 S11: -0.0063 S12: -0.0139 S13: 0.0668 REMARK 3 S21: -0.0310 S22: -0.0198 S23: 0.0069 REMARK 3 S31: -0.2218 S32: -0.0360 S33: 0.0261 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6RM2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1292102117. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28514 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 48.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 19.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.58 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6FJR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: LISO4 PEG 8K, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 96.08500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 45.41000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.41000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 48.04250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.41000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 45.41000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 144.12750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.41000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.41000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 48.04250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 45.41000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.41000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 144.12750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 96.08500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -184.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 -90.82000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 90.82000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 11 -122.06 -123.94 REMARK 500 ALA A 36 55.96 -158.24 REMARK 500 PRO A 39 2.45 -67.64 REMARK 500 LYS A 68 -36.09 -130.32 REMARK 500 GLN A 187 -128.95 52.12 REMARK 500 CYS A 206 64.77 -109.90 REMARK 500 GLN A 287 60.05 38.67 REMARK 500 ASP A 321 42.04 -97.47 REMARK 500 GLN B 11 -121.59 -126.91 REMARK 500 ALA B 36 57.08 -157.91 REMARK 500 GLN B 187 -130.27 52.23 REMARK 500 CYS B 206 63.29 -109.88 REMARK 500 GLN B 287 60.71 38.24 REMARK 500 ASP B 321 45.02 -96.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP A 401 O2G REMARK 620 2 ATP A 401 O1A 68.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 42 O REMARK 620 2 ATP B 401 O3G 89.7 REMARK 620 3 ATP B 401 O2A 68.8 61.8 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMP A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMP B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6FJR RELATED DB: PDB DBREF 6RM2 A 1 343 UNP G3FFN6 G3FFN6_9CAUD 1 343 DBREF 6RM2 B 1 343 UNP G3FFN6 G3FFN6_9CAUD 1 343 SEQADV 6RM2 MET A -19 UNP G3FFN6 INITIATING METHIONINE SEQADV 6RM2 GLY A -18 UNP G3FFN6 EXPRESSION TAG SEQADV 6RM2 SER A -17 UNP G3FFN6 EXPRESSION TAG SEQADV 6RM2 SER A -16 UNP G3FFN6 EXPRESSION TAG SEQADV 6RM2 HIS A -15 UNP G3FFN6 EXPRESSION TAG SEQADV 6RM2 HIS A -14 UNP G3FFN6 EXPRESSION TAG SEQADV 6RM2 HIS A -13 UNP G3FFN6 EXPRESSION TAG SEQADV 6RM2 HIS A -12 UNP G3FFN6 EXPRESSION TAG SEQADV 6RM2 HIS A -11 UNP G3FFN6 EXPRESSION TAG SEQADV 6RM2 HIS A -10 UNP G3FFN6 EXPRESSION TAG SEQADV 6RM2 SER A -9 UNP G3FFN6 EXPRESSION TAG SEQADV 6RM2 SER A -8 UNP G3FFN6 EXPRESSION TAG SEQADV 6RM2 GLY A -7 UNP G3FFN6 EXPRESSION TAG SEQADV 6RM2 LEU A -6 UNP G3FFN6 EXPRESSION TAG SEQADV 6RM2 VAL A -5 UNP G3FFN6 EXPRESSION TAG SEQADV 6RM2 PRO A -4 UNP G3FFN6 EXPRESSION TAG SEQADV 6RM2 ARG A -3 UNP G3FFN6 EXPRESSION TAG SEQADV 6RM2 GLY A -2 UNP G3FFN6 EXPRESSION TAG SEQADV 6RM2 SER A -1 UNP G3FFN6 EXPRESSION TAG SEQADV 6RM2 HIS A 0 UNP G3FFN6 EXPRESSION TAG SEQADV 6RM2 GLU A 2 UNP G3FFN6 LYS 2 CONFLICT SEQADV 6RM2 MET B -19 UNP G3FFN6 INITIATING METHIONINE SEQADV 6RM2 GLY B -18 UNP G3FFN6 EXPRESSION TAG SEQADV 6RM2 SER B -17 UNP G3FFN6 EXPRESSION TAG SEQADV 6RM2 SER B -16 UNP G3FFN6 EXPRESSION TAG SEQADV 6RM2 HIS B -15 UNP G3FFN6 EXPRESSION TAG SEQADV 6RM2 HIS B -14 UNP G3FFN6 EXPRESSION TAG SEQADV 6RM2 HIS B -13 UNP G3FFN6 EXPRESSION TAG SEQADV 6RM2 HIS B -12 UNP G3FFN6 EXPRESSION TAG SEQADV 6RM2 HIS B -11 UNP G3FFN6 EXPRESSION TAG SEQADV 6RM2 HIS B -10 UNP G3FFN6 EXPRESSION TAG SEQADV 6RM2 SER B -9 UNP G3FFN6 EXPRESSION TAG SEQADV 6RM2 SER B -8 UNP G3FFN6 EXPRESSION TAG SEQADV 6RM2 GLY B -7 UNP G3FFN6 EXPRESSION TAG SEQADV 6RM2 LEU B -6 UNP G3FFN6 EXPRESSION TAG SEQADV 6RM2 VAL B -5 UNP G3FFN6 EXPRESSION TAG SEQADV 6RM2 PRO B -4 UNP G3FFN6 EXPRESSION TAG SEQADV 6RM2 ARG B -3 UNP G3FFN6 EXPRESSION TAG SEQADV 6RM2 GLY B -2 UNP G3FFN6 EXPRESSION TAG SEQADV 6RM2 SER B -1 UNP G3FFN6 EXPRESSION TAG SEQADV 6RM2 HIS B 0 UNP G3FFN6 EXPRESSION TAG SEQADV 6RM2 GLU B 2 UNP G3FFN6 LYS 2 CONFLICT SEQRES 1 A 363 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 363 LEU VAL PRO ARG GLY SER HIS MET GLU ASN VAL ASP LEU SEQRES 3 A 363 VAL ILE ASP LEU GLN PHE GLY SER THR GLY LYS GLY LEU SEQRES 4 A 363 ILE ALA GLY TYR LEU ALA GLU LYS ASN GLY TYR ASP THR SEQRES 5 A 363 VAL ILE ASN ALA ASN MET PRO ASN ALA GLY HIS THR TYR SEQRES 6 A 363 ILE ASN ALA GLU GLY ARG LYS TRP MET HIS LYS VAL LEU SEQRES 7 A 363 PRO ASN GLY ILE VAL SER PRO ASN LEU LYS ARG VAL MET SEQRES 8 A 363 LEU GLY ALA GLY SER VAL PHE SER ILE ASN ARG LEU MET SEQRES 9 A 363 GLU GLU ILE GLU MET SER LYS ASP LEU LEU HIS ASP LYS SEQRES 10 A 363 VAL ALA ILE LEU ILE HIS PRO MET ALA THR VAL LEU ASP SEQRES 11 A 363 GLU GLU ALA HIS LYS LYS ALA GLU VAL GLY ILE ALA THR SEQRES 12 A 363 SER ILE GLY SER THR GLY GLN GLY SER MET ALA ALA MET SEQRES 13 A 363 VAL GLU LYS LEU GLN ARG ASP PRO THR ASN ASN THR ILE SEQRES 14 A 363 VAL ALA ARG ASP VAL ALA GLN TYR ASP GLY ARG ILE ALA SEQRES 15 A 363 GLN TYR VAL CYS THR VAL GLU GLU TRP ASP MET ALA LEU SEQRES 16 A 363 MET ALA SER GLU ARG ILE LEU ALA GLU GLY ALA GLN GLY SEQRES 17 A 363 PHE SER LEU SER LEU ASN GLN GLU PHE TYR PRO TYR CYS SEQRES 18 A 363 THR SER ARG ASP CYS THR PRO ALA ARG PHE LEU ALA ASP SEQRES 19 A 363 MET GLY ILE PRO LEU PRO MET LEU ASN LYS VAL ILE GLY SEQRES 20 A 363 THR ALA ARG CYS HIS PRO ILE ARG VAL GLY GLY THR SER SEQRES 21 A 363 GLY GLY HIS TYR PRO ASP GLN GLU GLU LEU THR TRP GLU SEQRES 22 A 363 GLN LEU GLY GLN VAL PRO GLU LEU THR THR VAL THR LYS SEQRES 23 A 363 LYS VAL ARG ARG VAL PHE SER PHE SER PHE ILE GLN MET SEQRES 24 A 363 GLN LYS ALA MET TRP THR CYS GLN PRO ASP GLU VAL PHE SEQRES 25 A 363 LEU ASN PHE CYS ASN TYR LEU SER PRO MET GLY TRP GLN SEQRES 26 A 363 ASP ILE VAL HIS GLN ILE GLU VAL ALA ALA GLN SER ARG SEQRES 27 A 363 TYR CYS ASP ALA GLU VAL LYS TYR LEU GLY PHE GLY PRO SEQRES 28 A 363 THR PHE ASN ASP VAL GLU LEU ARG GLU ASP VAL MET SEQRES 1 B 363 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 363 LEU VAL PRO ARG GLY SER HIS MET GLU ASN VAL ASP LEU SEQRES 3 B 363 VAL ILE ASP LEU GLN PHE GLY SER THR GLY LYS GLY LEU SEQRES 4 B 363 ILE ALA GLY TYR LEU ALA GLU LYS ASN GLY TYR ASP THR SEQRES 5 B 363 VAL ILE ASN ALA ASN MET PRO ASN ALA GLY HIS THR TYR SEQRES 6 B 363 ILE ASN ALA GLU GLY ARG LYS TRP MET HIS LYS VAL LEU SEQRES 7 B 363 PRO ASN GLY ILE VAL SER PRO ASN LEU LYS ARG VAL MET SEQRES 8 B 363 LEU GLY ALA GLY SER VAL PHE SER ILE ASN ARG LEU MET SEQRES 9 B 363 GLU GLU ILE GLU MET SER LYS ASP LEU LEU HIS ASP LYS SEQRES 10 B 363 VAL ALA ILE LEU ILE HIS PRO MET ALA THR VAL LEU ASP SEQRES 11 B 363 GLU GLU ALA HIS LYS LYS ALA GLU VAL GLY ILE ALA THR SEQRES 12 B 363 SER ILE GLY SER THR GLY GLN GLY SER MET ALA ALA MET SEQRES 13 B 363 VAL GLU LYS LEU GLN ARG ASP PRO THR ASN ASN THR ILE SEQRES 14 B 363 VAL ALA ARG ASP VAL ALA GLN TYR ASP GLY ARG ILE ALA SEQRES 15 B 363 GLN TYR VAL CYS THR VAL GLU GLU TRP ASP MET ALA LEU SEQRES 16 B 363 MET ALA SER GLU ARG ILE LEU ALA GLU GLY ALA GLN GLY SEQRES 17 B 363 PHE SER LEU SER LEU ASN GLN GLU PHE TYR PRO TYR CYS SEQRES 18 B 363 THR SER ARG ASP CYS THR PRO ALA ARG PHE LEU ALA ASP SEQRES 19 B 363 MET GLY ILE PRO LEU PRO MET LEU ASN LYS VAL ILE GLY SEQRES 20 B 363 THR ALA ARG CYS HIS PRO ILE ARG VAL GLY GLY THR SER SEQRES 21 B 363 GLY GLY HIS TYR PRO ASP GLN GLU GLU LEU THR TRP GLU SEQRES 22 B 363 GLN LEU GLY GLN VAL PRO GLU LEU THR THR VAL THR LYS SEQRES 23 B 363 LYS VAL ARG ARG VAL PHE SER PHE SER PHE ILE GLN MET SEQRES 24 B 363 GLN LYS ALA MET TRP THR CYS GLN PRO ASP GLU VAL PHE SEQRES 25 B 363 LEU ASN PHE CYS ASN TYR LEU SER PRO MET GLY TRP GLN SEQRES 26 B 363 ASP ILE VAL HIS GLN ILE GLU VAL ALA ALA GLN SER ARG SEQRES 27 B 363 TYR CYS ASP ALA GLU VAL LYS TYR LEU GLY PHE GLY PRO SEQRES 28 B 363 THR PHE ASN ASP VAL GLU LEU ARG GLU ASP VAL MET HET ATP A 401 31 HET MG A 402 1 HET IMP A 403 23 HET SO4 A 404 5 HET ATP B 401 31 HET MG B 402 1 HET IMP B 403 23 HET SO4 B 404 5 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM IMP INOSINIC ACID HETNAM SO4 SULFATE ION FORMUL 3 ATP 2(C10 H16 N5 O13 P3) FORMUL 4 MG 2(MG 2+) FORMUL 5 IMP 2(C10 H13 N4 O8 P) FORMUL 6 SO4 2(O4 S 2-) FORMUL 11 HOH *207(H2 O) HELIX 1 AA1 GLY A 16 GLY A 29 1 14 HELIX 2 AA2 PRO A 59 SER A 64 5 6 HELIX 3 AA3 SER A 79 SER A 90 1 12 HELIX 4 AA4 ASP A 110 ALA A 117 1 8 HELIX 5 AA5 GLU A 118 ILE A 125 1 8 HELIX 6 AA6 GLY A 131 ARG A 142 1 12 HELIX 7 AA7 VAL A 150 ALA A 155 1 6 HELIX 8 AA8 THR A 167 SER A 178 1 12 HELIX 9 AA9 GLY A 188 SER A 192 5 5 HELIX 10 AB1 THR A 207 GLY A 216 1 10 HELIX 11 AB2 PRO A 218 PRO A 220 5 3 HELIX 12 AB3 SER A 275 GLN A 287 1 13 HELIX 13 AB4 PHE A 295 LEU A 299 5 5 HELIX 14 AB5 SER A 300 ARG A 318 1 19 HELIX 15 AB6 THR A 332 ASN A 334 5 3 HELIX 16 AB7 ARG A 339 MET A 343 1 5 HELIX 17 AB8 GLY B 16 GLY B 29 1 14 HELIX 18 AB9 PRO B 59 SER B 64 5 6 HELIX 19 AC1 SER B 79 SER B 90 1 12 HELIX 20 AC2 ASP B 110 ALA B 117 1 8 HELIX 21 AC3 GLY B 120 ILE B 125 1 6 HELIX 22 AC4 GLY B 131 GLN B 141 1 11 HELIX 23 AC5 VAL B 150 ALA B 155 1 6 HELIX 24 AC6 THR B 167 SER B 178 1 12 HELIX 25 AC7 GLY B 188 SER B 192 5 5 HELIX 26 AC8 THR B 207 GLY B 216 1 10 HELIX 27 AC9 PRO B 218 PRO B 220 5 3 HELIX 28 AD1 SER B 275 GLN B 287 1 13 HELIX 29 AD2 PHE B 295 LEU B 299 5 5 HELIX 30 AD3 SER B 300 SER B 317 1 18 HELIX 31 AD4 THR B 332 ASN B 334 5 3 HELIX 32 AD5 ARG B 339 MET B 343 1 5 SHEET 1 AA1 9 ALA A 99 ILE A 102 0 SHEET 2 AA1 9 ARG A 69 LEU A 72 1 N VAL A 70 O LEU A 101 SHEET 3 AA1 9 THR A 32 ASN A 35 1 N VAL A 33 O MET A 71 SHEET 4 AA1 9 ILE A 181 GLU A 184 1 O LEU A 182 N ILE A 34 SHEET 5 AA1 9 VAL A 4 ASP A 9 1 N ASP A 5 O ALA A 183 SHEET 6 AA1 9 LEU A 222 ARG A 230 1 O ILE A 226 N LEU A 6 SHEET 7 AA1 9 GLU A 290 ASN A 294 1 O ASN A 294 N ALA A 229 SHEET 8 AA1 9 GLU A 323 GLY A 328 1 O GLY A 328 N LEU A 293 SHEET 9 AA1 9 VAL A 336 LEU A 338 -1 O GLU A 337 N LEU A 327 SHEET 1 AA2 2 HIS A 43 ILE A 46 0 SHEET 2 AA2 2 LYS A 52 HIS A 55 -1 O HIS A 55 N HIS A 43 SHEET 1 AA3 2 VAL A 77 PHE A 78 0 SHEET 2 AA3 2 THR A 107 VAL A 108 1 O THR A 107 N PHE A 78 SHEET 1 AA4 3 ILE A 234 VAL A 236 0 SHEET 2 AA4 3 ARG A 269 PHE A 272 -1 O ARG A 270 N ARG A 235 SHEET 3 AA4 3 GLU A 249 LEU A 250 -1 N LEU A 250 O VAL A 271 SHEET 1 AA5 9 ALA B 99 ILE B 102 0 SHEET 2 AA5 9 ARG B 69 LEU B 72 1 N VAL B 70 O LEU B 101 SHEET 3 AA5 9 THR B 32 ASN B 35 1 N VAL B 33 O MET B 71 SHEET 4 AA5 9 ILE B 181 GLU B 184 1 O LEU B 182 N ILE B 34 SHEET 5 AA5 9 VAL B 4 ASP B 9 1 N ASP B 5 O ALA B 183 SHEET 6 AA5 9 LEU B 222 ARG B 230 1 O ASN B 223 N VAL B 4 SHEET 7 AA5 9 GLU B 290 ASN B 294 1 O ASN B 294 N ALA B 229 SHEET 8 AA5 9 GLU B 323 GLY B 328 1 O GLY B 328 N LEU B 293 SHEET 9 AA5 9 VAL B 336 LEU B 338 -1 O GLU B 337 N LEU B 327 SHEET 1 AA6 2 HIS B 43 ILE B 46 0 SHEET 2 AA6 2 LYS B 52 HIS B 55 -1 O TRP B 53 N TYR B 45 SHEET 1 AA7 2 VAL B 77 PHE B 78 0 SHEET 2 AA7 2 THR B 107 VAL B 108 1 O THR B 107 N PHE B 78 SHEET 1 AA8 3 ILE B 234 ARG B 235 0 SHEET 2 AA8 3 ARG B 270 PHE B 272 -1 O ARG B 270 N ARG B 235 SHEET 3 AA8 3 GLU B 249 LEU B 250 -1 N LEU B 250 O VAL B 271 LINK O2G ATP A 401 MG MG A 402 1555 1555 2.65 LINK O1A ATP A 401 MG MG A 402 1555 1555 1.94 LINK O GLY B 42 MG MG B 402 1555 1555 2.45 LINK O3G ATP B 401 MG MG B 402 1555 1555 2.42 LINK O2A ATP B 401 MG MG B 402 1555 1555 2.53 CISPEP 1 TYR A 198 PRO A 199 0 5.16 CISPEP 2 TYR B 198 PRO B 199 0 5.50 SITE 1 AC1 20 SER A 14 THR A 15 GLY A 16 LYS A 17 SITE 2 AC1 20 GLY A 18 LEU A 19 GLY A 42 HIS A 43 SITE 3 AC1 20 THR A 44 ARG A 269 ASN A 294 PHE A 295 SITE 4 AC1 20 ASN A 297 GLY A 330 PRO A 331 MG A 402 SITE 5 AC1 20 HOH A 509 HOH A 528 HOH A 531 HOH A 565 SITE 1 AC2 4 SER A 14 ALA A 41 GLY A 42 ATP A 401 SITE 1 AC3 15 SER A 14 ASN A 40 ALA A 41 GLY A 126 SITE 2 AC3 15 SER A 127 THR A 128 GLN A 187 LEU A 191 SITE 3 AC3 15 CYS A 201 THR A 202 VAL A 236 HOH A 531 SITE 4 AC3 15 HOH A 549 HOH A 551 ARG B 142 SITE 1 AC4 4 ASN A 28 ARG A 180 LYS A 224 HOH A 522 SITE 1 AC5 16 SER B 14 THR B 15 GLY B 16 LYS B 17 SITE 2 AC5 16 GLY B 18 GLY B 42 HIS B 43 THR B 44 SITE 3 AC5 16 THR B 263 ARG B 269 ASN B 294 PHE B 295 SITE 4 AC5 16 ASN B 297 GLY B 330 PRO B 331 MG B 402 SITE 1 AC6 4 SER B 14 GLY B 42 THR B 263 ATP B 401 SITE 1 AC7 18 ARG A 142 PHE B 12 SER B 14 ASN B 40 SITE 2 AC7 18 ALA B 41 ILE B 125 SER B 127 THR B 128 SITE 3 AC7 18 GLN B 187 LEU B 191 CYS B 201 THR B 202 SITE 4 AC7 18 VAL B 236 SER B 240 HOH B 505 HOH B 514 SITE 5 AC7 18 HOH B 546 HOH B 553 SITE 1 AC8 4 ASN B 334 VAL B 336 GLU B 337 HOH B 513 CRYST1 90.820 90.820 192.170 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011011 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011011 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005204 0.00000