HEADER PLANT PROTEIN 07-MAY-19 6RMS TITLE THE STRUCTURE OF VARIANT D274E OF THE MO-INSERTASE DOMAIN CNX1E FROM TITLE 2 ARABIDOPSIS THALIANA IN COMPLEX WITH AMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: MOLYBDOPTERIN BIOSYNTHESIS PROTEIN CNX1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MOLYBDENUM COFACTOR BIOSYNTHESIS ENZYME CNX1; COMPND 5 EC: 2.10.1.1,2.7.7.75; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: OXIDATION OF CYS-161 DUE TO RADIATION DAMGE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: CNX1, AT5G20990, F22D1.6, T10F18.20; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGPUS-CNX1E KEYWDS ARABIDOPSIS, ARABIDOPSIS PROTEINS, METALLOPROTEINS, CATALYTIC DOMAIN, KEYWDS 2 NUCLEOTIDE BINDING, ADENOSINE MONOPHOSPHATE, PLANT PROTEIN EXPDTA X-RAY DIFFRACTION; SOLUTION SCATTERING AUTHOR J.KRAUSZE REVDAT 2 24-JAN-24 6RMS 1 REMARK LINK REVDAT 1 19-FEB-20 6RMS 0 JRNL AUTH T.W.HERCHER,J.KRAUSZE,S.HOFFMEISTER,D.ZWERSCHKE,T.LINDEL, JRNL AUTH 2 W.BLANKENFELDT,R.R.MENDEL,T.KRUSE JRNL TITL INSIGHTS INTO THE CNX1E CATALYZED MPT-AMP HYDROLYSIS. JRNL REF BIOSCI.REP. V. 40 2020 JRNL REFN ISSN 0144-8463 JRNL PMID 31860061 JRNL DOI 10.1042/BSR20191806 REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 63.7 REMARK 3 NUMBER OF REFLECTIONS : 34684 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 1723 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.85 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 7.57 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 694 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2566 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 651 REMARK 3 BIN R VALUE (WORKING SET) : 0.2607 REMARK 3 BIN FREE R VALUE : 0.2005 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2930 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 228 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.26290 REMARK 3 B22 (A**2) : 3.78560 REMARK 3 B33 (A**2) : -0.52270 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.280 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.160 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.136 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.235 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.135 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6096 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 11117 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1335 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 913 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6096 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 421 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6350 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.07 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.53 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 13.30 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 26.3709 19.6888 0.6873 REMARK 3 T TENSOR REMARK 3 T11: -0.0649 T22: 0.0371 REMARK 3 T33: -0.0047 T12: 0.0178 REMARK 3 T13: 0.0103 T23: 0.0196 REMARK 3 L TENSOR REMARK 3 L11: 0.2339 L22: 0.0000 REMARK 3 L33: 0.1999 L12: 0.0535 REMARK 3 L13: 0.0932 L23: 0.0184 REMARK 3 S TENSOR REMARK 3 S11: 0.0195 S12: 0.0320 S13: 0.1436 REMARK 3 S21: 0.0180 S22: 0.0293 S23: 0.0359 REMARK 3 S31: 0.0245 S32: -0.0748 S33: -0.0488 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6RMS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1292102199. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, DESY REMARK 200 BEAMLINE : P11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL (SI-111) REMARK 200 OPTICS : FOCUSSING MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS VERSION JAN 26, 2018 REMARK 200 DATA SCALING SOFTWARE : AUTOPROC 1.0.5, AIMLESS 0.7.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34702 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.740 REMARK 200 RESOLUTION RANGE LOW (A) : 90.009 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 65.7 REMARK 200 DATA REDUNDANCY : 13.20 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 16.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.00 REMARK 200 R MERGE FOR SHELL (I) : 1.60500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BUSTER 2.10.3 REMARK 200 STARTING MODEL: 6ETD REMARK 200 REMARK 200 REMARK: ISOMETRIC PRISM REMARK 265 REMARK 265 EXPERIMENTAL DETAILS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.12 M 1,6-HEXANEDIOL; 0.12 M 1 REMARK 280 -BUTANOL; 0.12 M 1,2-PROPANEDIOL (RACEMIC); 0.12 M 2-PROPANOL; REMARK 280 0.12 M 1,4-BUTANEDIOL; 0.12 M 1,3-PROPANEDIOL; 30% (V/V) REMARK 280 GLYCEROL; 30% (W/V) PEG 4000; 0.1 M IMIDAZOLE; 0.1 M MES; PH 6.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 32.41800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.74000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 68.43350 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 32.41800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.74000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 68.43350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 32.41800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 59.74000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 68.43350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 32.41800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 59.74000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 68.43350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -87.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 64.83600 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 84 REMARK 465 GLU A 85 REMARK 465 SER A 86 REMARK 465 ARG A 87 REMARK 465 ALA A 88 REMARK 465 GLY A 89 REMARK 465 ASN A 90 REMARK 465 ASP A 91 REMARK 465 GLY A 92 REMARK 465 LEU A 93 REMARK 465 GLY A 94 REMARK 465 VAL A 95 REMARK 465 VAL A 130 REMARK 465 SER A 131 REMARK 465 THR A 132 REMARK 465 GLU A 133 REMARK 465 SER A 134 REMARK 465 SER A 269 REMARK 465 MET A 270 REMARK 465 GLY A 271 REMARK 465 ASP A 272 REMARK 465 ARG A 273 REMARK 465 ASP A 274 REMARK 465 PRO A 308 REMARK 465 THR A 309 REMARK 465 GLU A 310 REMARK 465 SER A 311 REMARK 465 MET A 312 REMARK 465 LEU A 313 REMARK 465 ASP A 442 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 27 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 129 CG OD1 OD2 REMARK 470 LYS A 135 CG CD CE NZ REMARK 470 LYS A 144 CD CE NZ REMARK 470 LYS A 145 CD CE NZ REMARK 470 ARG A 212 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 245 CD CE NZ REMARK 470 LYS A 307 CG CD CE NZ REMARK 470 ASP A 435 CG OD1 OD2 REMARK 470 ILE A 436 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR A 41 O HOH A 601 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CB ILE A 436 CB ILE A 436 3655 0.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 297 -57.63 179.93 REMARK 500 LEU A 299 109.20 -165.42 REMARK 500 SER A 349 75.34 -119.55 REMARK 500 PHE A 372 79.77 -106.37 REMARK 500 ASP A 435 110.91 -30.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 828 DISTANCE = 5.86 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 505 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 AMP A 504 O2P REMARK 620 2 HOH A 615 O 98.5 REMARK 620 3 HOH A 656 O 95.7 83.3 REMARK 620 4 HOH A 674 O 97.0 89.4 166.2 REMARK 620 5 HOH A 680 O 173.6 87.2 87.9 80.1 REMARK 620 6 HOH A 766 O 91.4 168.0 89.0 96.1 83.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMD A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AMP A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 505 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SASDCM8 RELATED DB: SASBDB REMARK 900 SAXS OF CNX1E DIMER DBREF 6RMS A 16 442 UNP Q39054 CNX1_ARATH 16 442 SEQRES 1 A 427 MET ILE PRO THR GLU GLU ALA LEU ARG ILE VAL PHE GLY SEQRES 2 A 427 VAL SER LYS ARG LEU PRO PRO VAL ILE VAL SER LEU TYR SEQRES 3 A 427 GLU ALA LEU GLY LYS VAL LEU ALA GLU ASP ILE ARG ALA SEQRES 4 A 427 PRO ASP PRO LEU PRO PRO TYR PRO ALA SER VAL LYS ASP SEQRES 5 A 427 GLY TYR ALA VAL VAL ALA SER ASP GLY PRO GLY GLU TYR SEQRES 6 A 427 PRO VAL ILE THR GLU SER ARG ALA GLY ASN ASP GLY LEU SEQRES 7 A 427 GLY VAL THR VAL THR PRO GLY THR VAL ALA TYR VAL THR SEQRES 8 A 427 THR GLY GLY PRO ILE PRO ASP GLY ALA ASP ALA VAL VAL SEQRES 9 A 427 GLN VAL GLU ASP THR LYS VAL ILE GLY ASP VAL SER THR SEQRES 10 A 427 GLU SER LYS ARG VAL LYS ILE LEU ILE GLN THR LYS LYS SEQRES 11 A 427 GLY THR ASP ILE ARG ARG VAL GLY CSX ASP ILE GLU LYS SEQRES 12 A 427 ASP ALA THR VAL LEU THR THR GLY GLU ARG ILE GLY ALA SEQRES 13 A 427 SER GLU ILE GLY LEU LEU ALA THR ALA GLY VAL THR MET SEQRES 14 A 427 VAL LYS VAL TYR PRO MET PRO ILE VAL ALA ILE LEU SER SEQRES 15 A 427 THR GLY ASP GLU LEU VAL GLU PRO THR ALA GLY THR LEU SEQRES 16 A 427 GLY ARG GLY GLN ILE ARG ASP SER ASN ARG ALA MET LEU SEQRES 17 A 427 VAL ALA ALA VAL MET GLN GLN GLN CYS LYS VAL VAL ASP SEQRES 18 A 427 LEU GLY ILE VAL ARG ASP ASP ARG LYS GLU LEU GLU LYS SEQRES 19 A 427 VAL LEU ASP GLU ALA VAL SER SER GLY VAL ASP ILE ILE SEQRES 20 A 427 LEU THR SER GLY GLY VAL SER MET GLY ASP ARG ASP PHE SEQRES 21 A 427 VAL LYS PRO LEU LEU GLU GLU LYS GLY LYS VAL TYR PHE SEQRES 22 A 427 SER LYS VAL LEU MET LYS PRO GLY LYS PRO LEU THR PHE SEQRES 23 A 427 ALA GLU ILE ARG ALA LYS PRO THR GLU SER MET LEU GLY SEQRES 24 A 427 LYS THR VAL LEU ALA PHE GLY LEU PRO GLY ASN PRO VAL SEQRES 25 A 427 SER CYS LEU VAL CYS PHE ASN ILE PHE VAL VAL PRO THR SEQRES 26 A 427 ILE ARG GLN LEU ALA GLY TRP THR SER PRO HIS PRO LEU SEQRES 27 A 427 ARG VAL ARG LEU ARG LEU GLN GLU PRO ILE LYS SER ASP SEQRES 28 A 427 PRO ILE ARG PRO GLU PHE HIS ARG ALA ILE ILE LYS TRP SEQRES 29 A 427 LYS ASP ASN ASP GLY SER GLY THR PRO GLY PHE VAL ALA SEQRES 30 A 427 GLU SER THR GLY HIS GLN MET SER SER ARG LEU LEU SER SEQRES 31 A 427 MET ARG SER ALA ASN ALA LEU LEU GLU LEU PRO ALA THR SEQRES 32 A 427 GLY ASN VAL LEU SER ALA GLY SER SER VAL SER ALA ILE SEQRES 33 A 427 ILE VAL SER ASP ILE SER ALA PHE SER ILE ASP MODRES 6RMS CSX A 154 CYS MODIFIED RESIDUE HET CSX A 154 12 HET SO4 A 501 5 HET EDO A 502 10 HET IMD A 503 10 HET AMP A 504 35 HET MG A 505 1 HETNAM CSX S-OXY CYSTEINE HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM IMD IMIDAZOLE HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM MG MAGNESIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 1 CSX C3 H7 N O3 S FORMUL 2 SO4 O4 S 2- FORMUL 3 EDO C2 H6 O2 FORMUL 4 IMD C3 H5 N2 1+ FORMUL 5 AMP C10 H14 N5 O7 P FORMUL 6 MG MG 2+ FORMUL 7 HOH *228(H2 O) HELIX 1 AA1 THR A 19 SER A 30 1 12 HELIX 2 AA2 LEU A 40 LEU A 44 1 5 HELIX 3 AA3 VAL A 72 GLY A 76 5 5 HELIX 4 AA4 GLY A 170 ALA A 180 1 11 HELIX 5 AA5 SER A 218 GLN A 230 1 13 HELIX 6 AA6 ASP A 243 SER A 257 1 15 HELIX 7 AA7 VAL A 276 GLY A 284 1 9 HELIX 8 AA8 ASN A 325 ALA A 345 1 21 HELIX 9 AA9 ARG A 402 ARG A 407 5 6 HELIX 10 AB1 ASP A 435 PHE A 439 5 5 SHEET 1 AA1 7 ILE A 17 PRO A 18 0 SHEET 2 AA1 7 LYS A 285 LEU A 292 1 O LEU A 292 N ILE A 17 SHEET 3 AA1 7 PRO A 298 ARG A 305 -1 O PHE A 301 N TYR A 287 SHEET 4 AA1 7 THR A 316 LEU A 322 -1 O ALA A 319 N ALA A 302 SHEET 5 AA1 7 ILE A 261 SER A 265 1 N ILE A 262 O PHE A 320 SHEET 6 AA1 7 VAL A 193 THR A 198 1 N ALA A 194 O LEU A 263 SHEET 7 AA1 7 VAL A 234 VAL A 240 1 O LEU A 237 N ILE A 195 SHEET 1 AA2 3 VAL A 36 SER A 39 0 SHEET 2 AA2 3 MET A 184 TYR A 188 -1 O VAL A 185 N VAL A 38 SHEET 3 AA2 3 VAL A 47 LEU A 48 -1 N VAL A 47 O TYR A 188 SHEET 1 AA3 2 ILE A 52 ARG A 53 0 SHEET 2 AA3 2 THR A 161 LEU A 163 -1 O LEU A 163 N ILE A 52 SHEET 1 AA4 2 ALA A 63 SER A 64 0 SHEET 2 AA4 2 ILE A 149 ARG A 150 -1 O ARG A 150 N ALA A 63 SHEET 1 AA5 3 ALA A 103 VAL A 105 0 SHEET 2 AA5 3 GLY A 68 VAL A 71 -1 N ALA A 70 O ALA A 103 SHEET 3 AA5 3 ALA A 117 GLN A 120 -1 O ALA A 117 N VAL A 71 SHEET 1 AA6 3 GLY A 78 PRO A 81 0 SHEET 2 AA6 3 ARG A 136 ILE A 139 -1 O ILE A 139 N GLY A 78 SHEET 3 AA6 3 THR A 124 ILE A 127 -1 N LYS A 125 O LYS A 138 SHEET 1 AA7 2 LEU A 202 VAL A 203 0 SHEET 2 AA7 2 ILE A 215 ARG A 216 1 O ILE A 215 N VAL A 203 SHEET 1 AA8 6 ARG A 354 LEU A 359 0 SHEET 2 AA8 6 GLY A 389 SER A 394 1 O ALA A 392 N ARG A 358 SHEET 3 AA8 6 GLU A 371 LYS A 380 -1 N LYS A 380 O GLY A 389 SHEET 4 AA8 6 ALA A 411 LEU A 415 -1 O LEU A 413 N HIS A 373 SHEET 5 AA8 6 SER A 427 ILE A 432 -1 O ILE A 431 N LEU A 412 SHEET 6 AA8 6 ARG A 354 LEU A 359 -1 N VAL A 355 O ALA A 430 SHEET 1 AA9 2 ILE A 363 LYS A 364 0 SHEET 2 AA9 2 VAL A 421 LEU A 422 -1 O LEU A 422 N ILE A 363 LINK C GLY A 153 N CSX A 154 1555 1555 1.35 LINK C CSX A 154 N ASP A 155 1555 1555 1.35 LINK O2P AMP A 504 MG MG A 505 1555 1555 1.94 LINK MG MG A 505 O HOH A 615 1555 1555 2.24 LINK MG MG A 505 O HOH A 656 1555 1555 2.24 LINK MG MG A 505 O HOH A 674 1555 3655 2.14 LINK MG MG A 505 O HOH A 680 1555 1555 2.07 LINK MG MG A 505 O HOH A 766 1555 1555 2.20 CISPEP 1 LEU A 58 PRO A 59 0 -7.56 CISPEP 2 LYS A 294 PRO A 295 0 10.34 SITE 1 AC1 5 PRO A 295 GLY A 296 ARG A 369 SER A 400 SITE 2 AC1 5 HOH A 655 SITE 1 AC2 4 GLY A 166 TRP A 347 THR A 348 SER A 349 SITE 1 AC3 1 HOH A 668 SITE 1 AC4 21 SER A 197 GLU A 201 LEU A 202 ILE A 215 SITE 2 AC4 21 ASP A 217 SER A 218 ASN A 219 GLY A 266 SITE 3 AC4 21 GLY A 267 GLY A 324 ASN A 325 MG A 505 SITE 4 AC4 21 HOH A 615 HOH A 624 HOH A 664 HOH A 675 SITE 5 AC4 21 HOH A 712 HOH A 729 HOH A 763 HOH A 766 SITE 6 AC4 21 HOH A 775 SITE 1 AC5 5 AMP A 504 HOH A 615 HOH A 656 HOH A 680 SITE 2 AC5 5 HOH A 766 CRYST1 64.836 119.480 136.867 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015424 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008370 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007306 0.00000