HEADER MEMBRANE PROTEIN 08-MAY-19 6RNK TITLE CRYSTAL STRUCTURE OF A HUMANIZED (K18E, K269N) RAT SUCCINATE RECEPTOR TITLE 2 SUCNR1 (GPR91) IN COMPLEX WITH A NANOBODY AND ANTAGONIST NF-56-EJ40. COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUCCINATE RECEPTOR 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: G-PROTEIN COUPLED RECEPTOR 91; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NANOBODY6; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: SUCNR1, GPR91; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: VICUGNA PACOS; SOURCE 10 ORGANISM_TAXID: 30538; SOURCE 11 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS SUCNR1, GPR91, GPCR, G-PROTEIN COUPLED RECEPTOR, NANOBODY, KEYWDS 2 ANTAGONIST, SUCCINATE, COMPLEX, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.HAFFKE,V.-P.JAAKOLA REVDAT 4 24-JAN-24 6RNK 1 REMARK REVDAT 3 06-NOV-19 6RNK 1 JRNL REVDAT 2 16-OCT-19 6RNK 1 JRNL REVDAT 1 14-AUG-19 6RNK 0 JRNL AUTH M.HAFFKE,D.FEHLMANN,G.RUMMEL,J.BOIVINEAU,M.DUCKELY, JRNL AUTH 2 N.GOMMERMANN,S.COTESTA,F.SIROCKIN,F.FREULER, JRNL AUTH 3 A.LITTLEWOOD-EVANS,K.KAUPMANN,V.P.JAAKOLA JRNL TITL STRUCTURAL BASIS OF SPECIES-SELECTIVE ANTAGONIST BINDING TO JRNL TITL 2 THE SUCCINATE RECEPTOR. JRNL REF NATURE V. 574 581 2019 JRNL REFN ESSN 1476-4687 JRNL PMID 31645725 JRNL DOI 10.1038/S41586-019-1663-8 REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 75.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 76.6 REMARK 3 NUMBER OF REFLECTIONS : 40585 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.880 REMARK 3 FREE R VALUE TEST SET COUNT : 1980 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.03 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 11.92 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 812 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2058 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 773 REMARK 3 BIN R VALUE (WORKING SET) : 0.2050 REMARK 3 BIN FREE R VALUE : 0.2212 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 39 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3281 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 286 REMARK 3 SOLVENT ATOMS : 242 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.18150 REMARK 3 B22 (A**2) : -1.61380 REMARK 3 B33 (A**2) : 1.43230 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 3.57610 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.230 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.144 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.128 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.145 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.129 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3638 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4869 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1309 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 572 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3638 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 449 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4359 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.99 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.20 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.97 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -3.1974 23.2309 18.5300 REMARK 3 T TENSOR REMARK 3 T11: -0.0367 T22: -0.0462 REMARK 3 T33: -0.0452 T12: -0.0032 REMARK 3 T13: 0.0481 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 0.6328 L22: 2.3597 REMARK 3 L33: 0.7668 L12: -0.2005 REMARK 3 L13: -0.1680 L23: 0.3512 REMARK 3 S TENSOR REMARK 3 S11: -0.0028 S12: 0.0617 S13: 0.0440 REMARK 3 S21: -0.2674 S22: 0.0041 S23: -0.0691 REMARK 3 S31: -0.0266 S32: 0.0444 S33: -0.0013 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 2.6069 63.8335 25.0224 REMARK 3 T TENSOR REMARK 3 T11: -0.0481 T22: -0.1527 REMARK 3 T33: -0.0248 T12: -0.0592 REMARK 3 T13: 0.0561 T23: 0.0341 REMARK 3 L TENSOR REMARK 3 L11: 2.4404 L22: 5.8352 REMARK 3 L33: 2.2320 L12: 0.1628 REMARK 3 L13: -0.3926 L23: 1.7161 REMARK 3 S TENSOR REMARK 3 S11: -0.0209 S12: 0.0548 S13: 0.0519 REMARK 3 S21: -0.4302 S22: 0.0823 S23: -0.2496 REMARK 3 S31: -0.1451 S32: 0.0769 S33: -0.0613 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6RNK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1292102243. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100.00 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00002 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS BUILT 20190315 REMARK 200 DATA SCALING SOFTWARE : AUTOPROC 20190301 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 88565 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.430 REMARK 200 RESOLUTION RANGE LOW (A) : 75.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 67.0 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.21300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.43 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 8.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 8.75600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.0 REMARK 200 STARTING MODEL: 6IBB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM ADA, PH 7.0, 28% PEG MME 550, REMARK 280 0.55 M (NH4)2SO4, 100-400 MICROM COMPOUND 3, 1-4 % (V/V) DMSO, REMARK 280 LIPIDIC CUBIC PHASE, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 38.41500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 75.46500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 38.41500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 75.46500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 209 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A -6 REMARK 465 TYR A -5 REMARK 465 LYS A -4 REMARK 465 ASP A -3 REMARK 465 ASP A -2 REMARK 465 ASP A -1 REMARK 465 ASP A 0 REMARK 465 LYS A 1 REMARK 465 ALA A 2 REMARK 465 GLN A 3 REMARK 465 ASN A 4 REMARK 465 LEU A 5 REMARK 465 SER A 6 REMARK 465 GLN A 215 REMARK 465 GLN A 216 REMARK 465 GLN A 217 REMARK 465 ALA A 218 REMARK 465 THR A 219 REMARK 465 VAL A 220 REMARK 465 LEU A 221 REMARK 465 SER A 222 REMARK 465 LEU A 223 REMARK 465 ASP A 257 REMARK 465 SER A 258 REMARK 465 TRP A 259 REMARK 465 PRO A 260 REMARK 465 GLN A 261 REMARK 465 ARG A 306 REMARK 465 GLN A 307 REMARK 465 TYR A 308 REMARK 465 PHE A 309 REMARK 465 LYS A 310 REMARK 465 SER A 311 REMARK 465 LEU A 312 REMARK 465 THR A 313 REMARK 465 SER A 314 REMARK 465 PHE A 315 REMARK 465 ARG A 316 REMARK 465 LEU A 317 REMARK 465 LEU A 318 REMARK 465 GLU A 319 REMARK 465 VAL A 320 REMARK 465 LEU A 321 REMARK 465 PHE A 322 REMARK 465 GLN A 323 REMARK 465 GLY A 324 REMARK 465 PRO A 325 REMARK 465 HIS A 326 REMARK 465 HIS A 327 REMARK 465 HIS A 328 REMARK 465 HIS A 329 REMARK 465 HIS A 330 REMARK 465 HIS A 331 REMARK 465 HIS A 332 REMARK 465 HIS A 333 REMARK 465 HIS A 334 REMARK 465 HIS A 335 REMARK 465 ASP B 1 REMARK 465 TYR B 2 REMARK 465 LYS B 3 REMARK 465 ASP B 4 REMARK 465 ASP B 5 REMARK 465 ASP B 6 REMARK 465 ASP B 7 REMARK 465 LYS B 8 REMARK 465 GLU B 138 REMARK 465 VAL B 139 REMARK 465 LEU B 140 REMARK 465 PHE B 141 REMARK 465 GLN B 142 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 214 OG REMARK 470 GLU B 9 CG CD OE1 OE2 REMARK 470 TYR B 35 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU B 137 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 168 84.09 -154.25 REMARK 500 ARG B 74 -32.46 -132.61 REMARK 500 ALA B 99 168.07 179.49 REMARK 500 ARG B 111 -64.54 -91.66 REMARK 500 ASP B 115 71.52 -153.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OLC A 402 REMARK 610 OLC A 403 REMARK 610 OLC A 405 REMARK 610 OLC A 406 REMARK 610 OLC A 407 REMARK 610 OLC A 409 REMARK 610 OLC A 410 REMARK 610 OLC A 411 REMARK 610 OLC A 413 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue KAZ A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 416 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6IBB RELATED DB: PDB REMARK 900 6IBB CONTAINS THE SAME PROTEIN WITHOUT K18E, K269N MUTATIONS DBREF 6RNK A 2 317 UNP Q6IYF9 SUCR1_RAT 2 317 DBREF 6RNK B 1 142 PDB 6RNK 6RNK 1 142 SEQADV 6RNK ASP A -6 UNP Q6IYF9 EXPRESSION TAG SEQADV 6RNK TYR A -5 UNP Q6IYF9 EXPRESSION TAG SEQADV 6RNK LYS A -4 UNP Q6IYF9 EXPRESSION TAG SEQADV 6RNK ASP A -3 UNP Q6IYF9 EXPRESSION TAG SEQADV 6RNK ASP A -2 UNP Q6IYF9 EXPRESSION TAG SEQADV 6RNK ASP A -1 UNP Q6IYF9 EXPRESSION TAG SEQADV 6RNK ASP A 0 UNP Q6IYF9 EXPRESSION TAG SEQADV 6RNK LYS A 1 UNP Q6IYF9 EXPRESSION TAG SEQADV 6RNK GLU A 18 UNP Q6IYF9 LYS 18 ENGINEERED MUTATION SEQADV 6RNK ASN A 269 UNP Q6IYF9 LYS 269 ENGINEERED MUTATION SEQADV 6RNK LEU A 318 UNP Q6IYF9 EXPRESSION TAG SEQADV 6RNK GLU A 319 UNP Q6IYF9 EXPRESSION TAG SEQADV 6RNK VAL A 320 UNP Q6IYF9 EXPRESSION TAG SEQADV 6RNK LEU A 321 UNP Q6IYF9 EXPRESSION TAG SEQADV 6RNK PHE A 322 UNP Q6IYF9 EXPRESSION TAG SEQADV 6RNK GLN A 323 UNP Q6IYF9 EXPRESSION TAG SEQADV 6RNK GLY A 324 UNP Q6IYF9 EXPRESSION TAG SEQADV 6RNK PRO A 325 UNP Q6IYF9 EXPRESSION TAG SEQADV 6RNK HIS A 326 UNP Q6IYF9 EXPRESSION TAG SEQADV 6RNK HIS A 327 UNP Q6IYF9 EXPRESSION TAG SEQADV 6RNK HIS A 328 UNP Q6IYF9 EXPRESSION TAG SEQADV 6RNK HIS A 329 UNP Q6IYF9 EXPRESSION TAG SEQADV 6RNK HIS A 330 UNP Q6IYF9 EXPRESSION TAG SEQADV 6RNK HIS A 331 UNP Q6IYF9 EXPRESSION TAG SEQADV 6RNK HIS A 332 UNP Q6IYF9 EXPRESSION TAG SEQADV 6RNK HIS A 333 UNP Q6IYF9 EXPRESSION TAG SEQADV 6RNK HIS A 334 UNP Q6IYF9 EXPRESSION TAG SEQADV 6RNK HIS A 335 UNP Q6IYF9 EXPRESSION TAG SEQRES 1 A 342 ASP TYR LYS ASP ASP ASP ASP LYS ALA GLN ASN LEU SER SEQRES 2 A 342 CYS GLU ASN TRP LEU ALA LEU GLU ASN ILE LEU GLU LYS SEQRES 3 A 342 TYR TYR LEU SER ALA PHE TYR GLY ILE GLU PHE ILE VAL SEQRES 4 A 342 GLY MET LEU GLY ASN PHE THR VAL VAL PHE GLY TYR LEU SEQRES 5 A 342 PHE CYS MET LYS ASN TRP ASN SER SER ASN VAL TYR LEU SEQRES 6 A 342 PHE ASN LEU SER ILE SER ASP LEU ALA PHE LEU CYS THR SEQRES 7 A 342 LEU PRO MET LEU ILE ARG SER TYR ALA THR GLY ASN TRP SEQRES 8 A 342 THR TYR GLY ASP VAL LEU CYS ILE SER ASN ARG TYR VAL SEQRES 9 A 342 LEU HIS ALA ASN LEU TYR THR SER ILE LEU PHE LEU THR SEQRES 10 A 342 PHE ILE SER ILE ASP ARG TYR LEU LEU MET LYS PHE PRO SEQRES 11 A 342 PHE ARG GLU HIS ILE LEU GLN LYS LYS GLU PHE ALA ILE SEQRES 12 A 342 LEU ILE SER LEU ALA VAL TRP VAL LEU VAL THR LEU GLU SEQRES 13 A 342 VAL LEU PRO MET LEU THR PHE ILE THR SER THR PRO ILE SEQRES 14 A 342 GLU LYS GLY ASP SER CYS VAL ASP TYR ALA SER SER GLY SEQRES 15 A 342 ASN PRO LYS TYR SER LEU ILE TYR SER LEU CYS LEU THR SEQRES 16 A 342 LEU LEU GLY PHE LEU ILE PRO LEU SER VAL MET CYS PHE SEQRES 17 A 342 PHE TYR TYR LYS MET VAL VAL PHE LEU LYS LYS ARG SER SEQRES 18 A 342 GLN GLN GLN ALA THR VAL LEU SER LEU ASN LYS PRO LEU SEQRES 19 A 342 ARG LEU VAL VAL LEU ALA VAL VAL ILE PHE SER VAL LEU SEQRES 20 A 342 PHE THR PRO TYR HIS ILE MET ARG ASN VAL ARG ILE ALA SEQRES 21 A 342 SER ARG LEU ASP SER TRP PRO GLN GLY CYS SER GLN LYS SEQRES 22 A 342 ALA ILE ASN CYS LEU TYR ILE LEU THR ARG PRO LEU ALA SEQRES 23 A 342 PHE LEU ASN SER ALA VAL ASN PRO ILE PHE TYR PHE LEU SEQRES 24 A 342 VAL GLY ASP HIS PHE ARG ASP MET LEU PHE SER LYS LEU SEQRES 25 A 342 ARG GLN TYR PHE LYS SER LEU THR SER PHE ARG LEU LEU SEQRES 26 A 342 GLU VAL LEU PHE GLN GLY PRO HIS HIS HIS HIS HIS HIS SEQRES 27 A 342 HIS HIS HIS HIS SEQRES 1 B 142 ASP TYR LYS ASP ASP ASP ASP LYS GLU VAL GLN LEU VAL SEQRES 2 B 142 GLU SER GLY GLY GLY LEU VAL GLN PRO GLY GLY SER LEU SEQRES 3 B 142 ARG LEU SER CYS GLU ALA SER GLY TYR THR LEU ALA ASN SEQRES 4 B 142 TYR ALA ILE GLY TRP PHE ARG GLN ALA PRO GLY LYS GLU SEQRES 5 B 142 ARG GLU GLY VAL SER CYS ILE SER SER GLY GLY SER THR SEQRES 6 B 142 VAL TYR SER GLU SER VAL LYS ASP ARG PHE THR ILE SER SEQRES 7 B 142 ARG ASP ASN ALA LYS LYS ILE VAL TYR LEU GLN MET ASN SEQRES 8 B 142 SER LEU GLN PRO GLU ASP THR ALA VAL TYR TYR CYS ALA SEQRES 9 B 142 ALA ASP PRO PHE GLY GLU ARG LEU CYS ILE ASP PRO ASN SEQRES 10 B 142 THR PHE ALA GLY TYR LEU GLU THR TRP GLY GLN GLY THR SEQRES 11 B 142 GLN VAL THR VAL SER SER LEU GLU VAL LEU PHE GLN HET KAZ A 401 33 HET OLC A 402 19 HET OLC A 403 19 HET OLC A 404 25 HET OLC A 405 19 HET OLC A 406 21 HET OLC A 407 14 HET OLC A 408 25 HET OLC A 409 10 HET OLC A 410 12 HET OLC A 411 11 HET OLC A 412 25 HET OLC A 413 17 HET OLC A 414 25 HET GOL A 415 6 HET SO4 A 416 5 HETNAM KAZ 2-[2-[[3-[4-[(4-METHYLPIPERAZIN-1-YL) HETNAM 2 KAZ METHYL]PHENYL]PHENYL]CARBONYLAMINO]PHENYL]ETHANOIC HETNAM 3 KAZ ACID HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN OLC 1-OLEOYL-R-GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 KAZ C27 H29 N3 O3 FORMUL 4 OLC 13(C21 H40 O4) FORMUL 17 GOL C3 H8 O3 FORMUL 18 SO4 O4 S 2- FORMUL 19 HOH *242(H2 O) HELIX 1 AA1 CYS A 7 TYR A 20 1 14 HELIX 2 AA2 TYR A 20 MET A 48 1 29 HELIX 3 AA3 ASN A 52 GLY A 82 1 31 HELIX 4 AA4 GLY A 87 PHE A 122 1 36 HELIX 5 AA5 HIS A 127 GLN A 130 5 4 HELIX 6 AA6 LYS A 131 THR A 160 1 30 HELIX 7 AA7 PRO A 161 GLY A 165 5 5 HELIX 8 AA8 ASN A 176 PHE A 192 1 17 HELIX 9 AA9 PHE A 192 SER A 214 1 23 HELIX 10 AB1 LYS A 225 SER A 254 1 30 HELIX 11 AB2 CYS A 263 ASN A 286 1 24 HELIX 12 AB3 PRO A 287 LEU A 292 5 6 HELIX 13 AB4 HIS A 296 LEU A 305 1 10 HELIX 14 AB5 GLN B 94 THR B 98 5 5 HELIX 15 AB6 ARG B 111 ILE B 114 5 4 HELIX 16 AB7 ASP B 115 ALA B 120 1 6 HELIX 17 AB8 GLY B 121 LEU B 123 5 3 SHEET 1 AA1 4 VAL B 10 SER B 15 0 SHEET 2 AA1 4 LEU B 26 GLY B 34 -1 O SER B 29 N SER B 15 SHEET 3 AA1 4 ILE B 85 MET B 90 -1 O MET B 90 N LEU B 26 SHEET 4 AA1 4 PHE B 75 ASP B 80 -1 N THR B 76 O GLN B 89 SHEET 1 AA2 6 GLY B 18 VAL B 20 0 SHEET 2 AA2 6 THR B 130 VAL B 134 1 O THR B 133 N VAL B 20 SHEET 3 AA2 6 ALA B 99 ASP B 106 -1 N TYR B 101 O THR B 130 SHEET 4 AA2 6 ALA B 41 GLN B 47 -1 N PHE B 45 O TYR B 102 SHEET 5 AA2 6 GLU B 54 ILE B 59 -1 O SER B 57 N TRP B 44 SHEET 6 AA2 6 THR B 65 TYR B 67 -1 O VAL B 66 N CYS B 58 SHEET 1 AA3 4 GLY B 18 VAL B 20 0 SHEET 2 AA3 4 THR B 130 VAL B 134 1 O THR B 133 N VAL B 20 SHEET 3 AA3 4 ALA B 99 ASP B 106 -1 N TYR B 101 O THR B 130 SHEET 4 AA3 4 THR B 125 TRP B 126 -1 O THR B 125 N ALA B 105 SSBOND 1 CYS A 7 CYS A 263 1555 1555 2.04 SSBOND 2 CYS A 91 CYS A 168 1555 1555 2.06 SSBOND 3 CYS B 30 CYS B 103 1555 1555 2.05 SSBOND 4 CYS B 58 CYS B 113 1555 1555 2.08 SITE 1 AC1 15 GLU A 18 TYR A 26 SER A 78 TYR A 79 SITE 2 AC1 15 GLY A 82 TRP A 84 ASN A 94 ARG A 95 SITE 3 AC1 15 LEU A 98 CYS A 168 TYR A 244 ARG A 276 SITE 4 AC1 15 PHE A 280 GOL A 415 HOH A 510 SITE 1 AC2 9 TYR A 57 PHE A 111 ILE A 114 ASP A 115 SITE 2 AC2 9 LEU A 129 PHE A 134 ILE A 138 OLC A 403 SITE 3 AC2 9 OLC A 408 SITE 1 AC3 9 ILE A 114 TYR A 117 ILE A 128 LEU A 129 SITE 2 AC3 9 LEU A 137 PHE A 201 OLC A 402 OLC A 404 SITE 3 AC3 9 HOH A 564 SITE 1 AC4 10 TRP A 51 LYS A 131 LYS A 132 GLU A 133 SITE 2 AC4 10 PHE A 201 OLC A 403 OLC A 408 HOH A 521 SITE 3 AC4 10 HOH A 550 THR B 118 SITE 1 AC5 7 PHE A 156 THR A 158 GLY A 175 ASN A 176 SITE 2 AC5 7 TYR A 179 SER A 180 TYR A 183 SITE 1 AC6 8 LYS A 49 TRP A 51 ASN A 60 LYS A 132 SITE 2 AC6 8 ILE A 136 SER A 139 TRP A 143 OLC A 409 SITE 1 AC7 3 ALA A 67 SER A 93 ASN A 94 SITE 1 AC8 5 SER A 197 VAL A 198 TYR A 204 OLC A 402 SITE 2 AC8 5 OLC A 404 SITE 1 AC9 4 LEU A 45 TRP A 51 PHE A 59 OLC A 406 SITE 1 AD1 4 LEU A 185 PHE A 192 VAL A 250 HOH A 548 SITE 1 AD2 3 ILE A 182 CYS A 186 LEU A 189 SITE 1 AD3 4 TYR A 21 ILE A 246 MET A 247 VAL A 250 SITE 1 AD4 4 TRP A 10 LEU A 17 TYR A 20 ALA A 267 SITE 1 AD5 9 TYR A 86 GLY A 87 ASP A 88 VAL A 89 SITE 2 AD5 9 LEU A 90 TYR A 96 HOH A 541 HOH A 554 SITE 3 AD5 9 GLY B 17 SITE 1 AD6 8 TYR A 79 ARG A 95 CYS A 168 ASP A 170 SITE 2 AD6 8 ARG A 276 KAZ A 401 HOH A 524 HOH A 559 SITE 1 AD7 3 HIS A 127 ILE A 128 LEU A 129 CRYST1 76.830 150.930 68.230 90.00 112.42 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013016 0.000000 0.005370 0.00000 SCALE2 0.000000 0.006626 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015855 0.00000