data_6RNL # _entry.id 6RNL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.314 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6RNL WWPDB D_1292102248 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6RNL _pdbx_database_status.recvd_initial_deposition_date 2019-05-09 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'McQuaid, K.T.' 1 0000-0002-3222-5584 'Hall, J.P.' 2 0000-0003-3716-4378 'Cardin, C.J.' 3 0000-0002-2556-9995 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Chem.Commun.(Camb.)' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1364-548X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 55 _citation.language ? _citation.page_first 9116 _citation.page_last 9119 _citation.title ;Three thymine/adenine binding modes of the ruthenium complex Lambda-[Ru(TAP)2(dppz)]2+to the G-quadruplex forming sequence d(TAGGGTT) shown by X-ray crystallography. ; _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1039/c9cc04316k _citation.pdbx_database_id_PubMed 31298665 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'McQuaid, K.' 1 ? primary 'Hall, J.P.' 2 ? primary 'Baumgaertner, L.' 3 ? primary 'Cardin, D.J.' 4 ? primary 'Cardin, C.J.' 5 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 6RNL _cell.details ? _cell.formula_units_Z ? _cell.length_a 38.514 _cell.length_a_esd ? _cell.length_b 38.514 _cell.length_b_esd ? _cell.length_c 128.804 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 24 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RNL _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*TP*AP*GP*GP*GP*TP*T)-3') ; 2168.445 4 ? ? ? ? 2 non-polymer syn 'POTASSIUM ION' 39.098 2 ? ? ? ? 3 non-polymer syn 'Ru(tap)2(dppz) complex' 747.732 4 ? ? ? ? 4 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 5 water nat water 18.015 75 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DT)(DA)(DG)(DG)(DG)(DT)(DT)' _entity_poly.pdbx_seq_one_letter_code_can TAGGGTT _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DA n 1 3 DG n 1 4 DG n 1 5 DG n 1 6 DT n 1 7 DT n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 7 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6RNL _struct_ref.pdbx_db_accession 6RNL _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6RNL A 1 ? 7 ? 6RNL 1 ? 7 ? 1 7 2 1 6RNL B 1 ? 7 ? 6RNL 1 ? 7 ? 1 7 3 1 6RNL C 1 ? 7 ? 6RNL 1 ? 7 ? 1 7 4 1 6RNL D 1 ? 7 ? 6RNL 1 ? 7 ? 1 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 RKL non-polymer . 'Ru(tap)2(dppz) complex' ? 'C38 H22 N12 Ru 2' 747.732 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6RNL _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.18 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 40 _exptl_crystal.description 'Red Rods' _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M potassium chloride, 0.025 sodium cacodylate, 17.5% Tacsimate pH 6.0, and 0.0005 M spermine.' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M-F' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2018-07-23 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.5570 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'DIAMOND BEAMLINE I03' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.5570 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline I03 _diffrn_source.pdbx_synchrotron_site Diamond # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6RNL _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.88 _reflns.d_resolution_low 32.289 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 17170 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 19.9 _reflns.pdbx_Rmerge_I_obs 0.1202 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 14.36 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.88 _reflns_shell.d_res_low 1.947 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.10 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 884 _reflns_shell.percent_possible_all 90.72 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.737 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6RNL _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.880 _refine.ls_d_res_low 32.289 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 17170 _refine.ls_number_reflns_R_free 830 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.69 _refine.ls_percent_reflns_R_free 4.83 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1885 _refine.ls_R_factor_R_free 0.2145 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1872 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 34.26 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.34 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 576 _refine_hist.pdbx_number_atoms_ligand 207 _refine_hist.number_atoms_solvent 75 _refine_hist.number_atoms_total 858 _refine_hist.d_res_high 1.880 _refine_hist.d_res_low 32.289 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.012 ? 900 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 2.287 ? 1428 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 34.296 ? 264 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.052 ? 108 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.015 ? 40 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.8803 1.9981 . . 141 2561 93.00 . . . 0.3905 . 0.4118 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.9981 2.1523 . . 154 2774 100.00 . . . 0.3399 . 0.3143 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.1523 2.3688 . . 112 2754 100.00 . . . 0.3513 . 0.3056 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.3688 2.7115 . . 149 2718 100.00 . . . 0.2770 . 0.2461 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.7115 3.4156 . . 128 2785 100.00 . . . 0.2214 . 0.1763 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.4156 32.2941 . . 146 2748 100.00 . . . 0.1475 . 0.1242 . . . . . . . . . . # _struct.entry_id 6RNL _struct.title 'L-[Ru(TAP)2(dppz)]2+ bound to the G-quadruplex forming sequence d(TAGGGTT)' _struct.pdbx_descriptor ;DNA (5'-D(*TP*CP*GP*GP*CP*GP*CP*CP*GP*A)-3') ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6RNL _struct_keywords.text 'Ruthenium, intercalation, DNA, asymmetric' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 3 ? G N N 3 ? H N N 4 ? I N N 2 ? J N N 3 ? K N N 3 ? L N N 5 ? M N N 5 ? N N N 5 ? O N N 5 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? A DG 3 O6 ? ? ? 1_555 I K . K ? ? A DG 3 C K 101 1_555 ? ? ? ? ? ? ? 2.640 ? metalc2 metalc ? ? A DG 4 O6 ? ? ? 1_555 E K . K ? ? A DG 4 A K 101 1_555 ? ? ? ? ? ? ? 2.810 ? metalc3 metalc ? ? A DG 4 O6 ? ? ? 1_555 I K . K ? ? A DG 4 C K 101 1_555 ? ? ? ? ? ? ? 2.999 ? metalc4 metalc ? ? A DG 5 O6 ? ? ? 1_555 E K . K ? ? A DG 5 A K 101 1_555 ? ? ? ? ? ? ? 2.761 ? metalc5 metalc ? ? B DG 3 O6 ? ? ? 1_555 I K . K ? ? B DG 3 C K 101 1_555 ? ? ? ? ? ? ? 2.632 ? metalc6 metalc ? ? B DG 4 O6 ? ? ? 1_555 E K . K ? ? B DG 4 A K 101 1_555 ? ? ? ? ? ? ? 2.770 ? metalc7 metalc ? ? B DG 4 O6 ? ? ? 1_555 I K . K ? ? B DG 4 C K 101 1_555 ? ? ? ? ? ? ? 2.826 ? metalc8 metalc ? ? B DG 5 O6 ? ? ? 1_555 E K . K ? ? B DG 5 A K 101 1_555 ? ? ? ? ? ? ? 2.767 ? metalc9 metalc ? ? C DG 3 O6 ? ? ? 1_555 I K . K ? ? C DG 3 C K 101 1_555 ? ? ? ? ? ? ? 2.577 ? metalc10 metalc ? ? C DG 4 O6 ? ? ? 1_555 E K . K ? ? C DG 4 A K 101 1_555 ? ? ? ? ? ? ? 2.740 ? metalc11 metalc ? ? C DG 4 O6 ? ? ? 1_555 I K . K ? ? C DG 4 C K 101 1_555 ? ? ? ? ? ? ? 2.924 ? metalc12 metalc ? ? C DG 5 O6 ? ? ? 1_555 E K . K ? ? C DG 5 A K 101 1_555 ? ? ? ? ? ? ? 2.804 ? metalc13 metalc ? ? D DG 3 O6 ? ? ? 1_555 I K . K ? ? D DG 3 C K 101 1_555 ? ? ? ? ? ? ? 2.447 ? metalc14 metalc ? ? D DG 4 O6 ? ? ? 1_555 E K . K ? ? D DG 4 A K 101 1_555 ? ? ? ? ? ? ? 2.734 ? metalc15 metalc ? ? D DG 4 O6 ? ? ? 1_555 I K . K ? ? D DG 4 C K 101 1_555 ? ? ? ? ? ? ? 3.284 ? metalc16 metalc ? ? D DG 5 O6 ? ? ? 1_555 E K . K ? ? D DG 5 A K 101 1_555 ? ? ? ? ? ? ? 2.768 ? metalc17 metalc ? ? H NA . NA ? ? ? 1_555 L HOH . O ? ? A NA 104 A HOH 216 1_555 ? ? ? ? ? ? ? 2.496 ? metalc18 metalc ? ? H NA . NA ? ? ? 1_555 L HOH . O ? ? A NA 104 A HOH 211 1_555 ? ? ? ? ? ? ? 2.496 ? metalc19 metalc ? ? H NA . NA ? ? ? 1_555 L HOH . O ? ? A NA 104 A HOH 221 1_555 ? ? ? ? ? ? ? 2.390 ? metalc20 metalc ? ? H NA . NA ? ? ? 1_555 M HOH . O ? ? A NA 104 B HOH 120 6_554 ? ? ? ? ? ? ? 2.470 ? hydrog1 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DG 3 O6 ? ? A DG 3 B DG 3 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog2 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DG 3 N7 ? ? A DG 3 B DG 3 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog3 hydrog ? ? A DG 3 N7 ? ? ? 1_555 D DG 3 N2 ? ? A DG 3 D DG 3 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog4 hydrog ? ? A DG 3 O6 ? ? ? 1_555 D DG 3 N1 ? ? A DG 3 D DG 3 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog5 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DG 4 O6 ? ? A DG 4 B DG 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog6 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DG 4 N7 ? ? A DG 4 B DG 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog7 hydrog ? ? A DG 4 N7 ? ? ? 1_555 D DG 4 N2 ? ? A DG 4 D DG 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog8 hydrog ? ? A DG 4 O6 ? ? ? 1_555 D DG 4 N1 ? ? A DG 4 D DG 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog9 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DG 5 O6 ? ? A DG 5 B DG 5 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog10 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DG 5 N7 ? ? A DG 5 B DG 5 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog11 hydrog ? ? A DG 5 N7 ? ? ? 1_555 D DG 5 N2 ? ? A DG 5 D DG 5 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog12 hydrog ? ? A DG 5 O6 ? ? ? 1_555 D DG 5 N1 ? ? A DG 5 D DG 5 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog13 hydrog ? ? B DT 1 N3 ? ? ? 1_555 D DA 2 N1 ? ? B DT 1 D DA 2 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? hydrog14 hydrog ? ? B DT 1 O2 ? ? ? 1_555 D DA 2 N6 ? ? B DT 1 D DA 2 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? hydrog15 hydrog ? ? B DA 2 N1 ? ? ? 1_555 D DT 1 N3 ? ? B DA 2 D DT 1 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? hydrog16 hydrog ? ? B DA 2 N6 ? ? ? 1_555 D DT 1 O2 ? ? B DA 2 D DT 1 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? hydrog17 hydrog ? ? B DG 3 N1 ? ? ? 1_555 C DG 3 O6 ? ? B DG 3 C DG 3 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog18 hydrog ? ? B DG 3 N2 ? ? ? 1_555 C DG 3 N7 ? ? B DG 3 C DG 3 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog19 hydrog ? ? B DG 4 N1 ? ? ? 1_555 C DG 4 O6 ? ? B DG 4 C DG 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog20 hydrog ? ? B DG 4 N2 ? ? ? 1_555 C DG 4 N7 ? ? B DG 4 C DG 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog21 hydrog ? ? B DG 5 N1 ? ? ? 1_555 C DG 5 O6 ? ? B DG 5 C DG 5 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog22 hydrog ? ? B DG 5 N2 ? ? ? 1_555 C DG 5 N7 ? ? B DG 5 C DG 5 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog23 hydrog ? ? B DT 7 N3 ? ? ? 1_555 D DT 7 O2 ? ? B DT 7 D DT 7 1_555 ? ? ? ? ? ? TYPE_13_PAIR ? ? hydrog24 hydrog ? ? B DT 7 O2 ? ? ? 1_555 D DT 7 N3 ? ? B DT 7 D DT 7 1_555 ? ? ? ? ? ? TYPE_13_PAIR ? ? hydrog25 hydrog ? ? C DG 3 N1 ? ? ? 1_555 D DG 3 O6 ? ? C DG 3 D DG 3 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog26 hydrog ? ? C DG 3 N2 ? ? ? 1_555 D DG 3 N7 ? ? C DG 3 D DG 3 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog27 hydrog ? ? C DG 4 N1 ? ? ? 1_555 D DG 4 O6 ? ? C DG 4 D DG 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog28 hydrog ? ? C DG 4 N2 ? ? ? 1_555 D DG 4 N7 ? ? C DG 4 D DG 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog29 hydrog ? ? C DG 5 N1 ? ? ? 1_555 D DG 5 O6 ? ? C DG 5 D DG 5 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog30 hydrog ? ? C DG 5 N2 ? ? ? 1_555 D DG 5 N7 ? ? C DG 5 D DG 5 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A K 101 ? 9 'binding site for residue K A 101' AC2 Software A RKL 102 ? 7 'binding site for residue RKL A 102' AC3 Software A RKL 103 ? 17 'binding site for residue RKL A 103' AC4 Software A NA 104 ? 5 'binding site for residue NA A 104' AC5 Software C K 101 ? 9 'binding site for residue K C 101' AC6 Software C RKL 102 ? 6 'binding site for residue RKL C 102' AC7 Software D RKL 101 ? 10 'binding site for residue RKL D 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 DG A 4 ? DG A 4 . ? 1_555 ? 2 AC1 9 DG A 5 ? DG A 5 . ? 1_555 ? 3 AC1 9 DG B 4 ? DG B 4 . ? 1_555 ? 4 AC1 9 DG B 5 ? DG B 5 . ? 1_555 ? 5 AC1 9 DG C 4 ? DG C 4 . ? 1_555 ? 6 AC1 9 DG C 5 ? DG C 5 . ? 1_555 ? 7 AC1 9 K I . ? K C 101 . ? 1_555 ? 8 AC1 9 DG D 4 ? DG D 4 . ? 1_555 ? 9 AC1 9 DG D 5 ? DG D 5 . ? 1_555 ? 10 AC2 7 DT A 6 ? DT A 6 . ? 1_555 ? 11 AC2 7 DT A 7 ? DT A 7 . ? 1_555 ? 12 AC2 7 RKL G . ? RKL A 103 . ? 1_555 ? 13 AC2 7 NA H . ? NA A 104 . ? 1_555 ? 14 AC2 7 DT C 1 ? DT C 1 . ? 6_554 ? 15 AC2 7 DA C 2 ? DA C 2 . ? 6_554 ? 16 AC2 7 DT C 7 ? DT C 7 . ? 1_655 ? 17 AC3 17 DT A 6 ? DT A 6 . ? 1_555 ? 18 AC3 17 RKL F . ? RKL A 102 . ? 1_555 ? 19 AC3 17 HOH L . ? HOH A 211 . ? 1_555 ? 20 AC3 17 HOH L . ? HOH A 215 . ? 1_555 ? 21 AC3 17 HOH L . ? HOH A 218 . ? 1_555 ? 22 AC3 17 DT B 1 ? DT B 1 . ? 6_554 ? 23 AC3 17 DA B 2 ? DA B 2 . ? 6_554 ? 24 AC3 17 DG B 3 ? DG B 3 . ? 6_554 ? 25 AC3 17 DG B 4 ? DG B 4 . ? 6_554 ? 26 AC3 17 DT B 6 ? DT B 6 . ? 1_555 ? 27 AC3 17 DT B 7 ? DT B 7 . ? 1_555 ? 28 AC3 17 HOH M . ? HOH B 108 . ? 1_555 ? 29 AC3 17 DA C 2 ? DA C 2 . ? 6_554 ? 30 AC3 17 DT D 1 ? DT D 1 . ? 6_554 ? 31 AC3 17 DA D 2 ? DA D 2 . ? 6_554 ? 32 AC3 17 DT D 7 ? DT D 7 . ? 1_555 ? 33 AC3 17 RKL K . ? RKL D 101 . ? 1_555 ? 34 AC4 5 RKL F . ? RKL A 102 . ? 1_555 ? 35 AC4 5 HOH L . ? HOH A 211 . ? 1_555 ? 36 AC4 5 HOH L . ? HOH A 216 . ? 1_555 ? 37 AC4 5 HOH L . ? HOH A 221 . ? 1_555 ? 38 AC4 5 HOH M . ? HOH B 120 . ? 6_554 ? 39 AC5 9 DG A 3 ? DG A 3 . ? 1_555 ? 40 AC5 9 DG A 4 ? DG A 4 . ? 1_555 ? 41 AC5 9 K E . ? K A 101 . ? 1_555 ? 42 AC5 9 DG B 3 ? DG B 3 . ? 1_555 ? 43 AC5 9 DG B 4 ? DG B 4 . ? 1_555 ? 44 AC5 9 DG C 3 ? DG C 3 . ? 1_555 ? 45 AC5 9 DG C 4 ? DG C 4 . ? 1_555 ? 46 AC5 9 DG D 3 ? DG D 3 . ? 1_555 ? 47 AC5 9 DG D 4 ? DG D 4 . ? 1_555 ? 48 AC6 6 DT A 1 ? DT A 1 . ? 6_554 ? 49 AC6 6 DA A 2 ? DA A 2 . ? 6_554 ? 50 AC6 6 DT A 7 ? DT A 7 . ? 1_455 ? 51 AC6 6 DT C 6 ? DT C 6 . ? 1_555 ? 52 AC6 6 DT C 7 ? DT C 7 . ? 1_555 ? 53 AC6 6 HOH N . ? HOH C 207 . ? 1_555 ? 54 AC7 10 DA A 2 ? DA A 2 . ? 6_554 ? 55 AC7 10 RKL G . ? RKL A 103 . ? 1_555 ? 56 AC7 10 DT B 6 ? DT B 6 . ? 1_555 ? 57 AC7 10 DT B 7 ? DT B 7 . ? 1_555 ? 58 AC7 10 HOH M . ? HOH B 107 . ? 1_555 ? 59 AC7 10 DG C 5 ? DG C 5 . ? 1_555 ? 60 AC7 10 DT C 6 ? DT C 6 . ? 1_555 ? 61 AC7 10 DT D 6 ? DT D 6 . ? 1_555 ? 62 AC7 10 DT D 7 ? DT D 7 . ? 1_555 ? 63 AC7 10 HOH O . ? HOH D 208 . ? 1_555 ? # _atom_sites.entry_id 6RNL _atom_sites.fract_transf_matrix[1][1] 0.025964 _atom_sites.fract_transf_matrix[1][2] 0.014991 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.029981 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007764 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H K N NA O P RU # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT DT A . n A 1 2 DA 2 2 2 DA DA A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DG 5 5 5 DG DG A . n A 1 6 DT 6 6 6 DT DT A . n A 1 7 DT 7 7 7 DT DT A . n B 1 1 DT 1 1 1 DT DT B . n B 1 2 DA 2 2 2 DA DA B . n B 1 3 DG 3 3 3 DG DG B . n B 1 4 DG 4 4 4 DG DG B . n B 1 5 DG 5 5 5 DG DG B . n B 1 6 DT 6 6 6 DT DT B . n B 1 7 DT 7 7 7 DT DT B . n C 1 1 DT 1 1 1 DT DT C . n C 1 2 DA 2 2 2 DA DA C . n C 1 3 DG 3 3 3 DG DG C . n C 1 4 DG 4 4 4 DG DG C . n C 1 5 DG 5 5 5 DG DG C . n C 1 6 DT 6 6 6 DT DT C . n C 1 7 DT 7 7 7 DT DT C . n D 1 1 DT 1 1 1 DT DT D . n D 1 2 DA 2 2 2 DA DA D . n D 1 3 DG 3 3 3 DG DG D . n D 1 4 DG 4 4 4 DG DG D . n D 1 5 DG 5 5 5 DG DG D . n D 1 6 DT 6 6 6 DT DT D . n D 1 7 DT 7 7 7 DT DT D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 K 1 101 1 K K A . F 3 RKL 1 102 1 RKL RKL A . G 3 RKL 1 103 3 RKL RKL A . H 4 NA 1 104 1 NA NA A . I 2 K 1 101 2 K K C . J 3 RKL 1 102 2 RKL RKL C . K 3 RKL 1 101 4 RKL RKL D . L 5 HOH 1 201 31 HOH HOH A . L 5 HOH 2 202 71 HOH HOH A . L 5 HOH 3 203 57 HOH HOH A . L 5 HOH 4 204 12 HOH HOH A . L 5 HOH 5 205 17 HOH HOH A . L 5 HOH 6 206 24 HOH HOH A . L 5 HOH 7 207 21 HOH HOH A . L 5 HOH 8 208 45 HOH HOH A . L 5 HOH 9 209 63 HOH HOH A . L 5 HOH 10 210 52 HOH HOH A . L 5 HOH 11 211 3 HOH HOH A . L 5 HOH 12 212 39 HOH HOH A . L 5 HOH 13 213 27 HOH HOH A . L 5 HOH 14 214 53 HOH HOH A . L 5 HOH 15 215 30 HOH HOH A . L 5 HOH 16 216 32 HOH HOH A . L 5 HOH 17 217 34 HOH HOH A . L 5 HOH 18 218 43 HOH HOH A . L 5 HOH 19 219 35 HOH HOH A . L 5 HOH 20 220 23 HOH HOH A . L 5 HOH 21 221 10 HOH HOH A . L 5 HOH 22 222 41 HOH HOH A . L 5 HOH 23 223 61 HOH HOH A . L 5 HOH 24 224 40 HOH HOH A . L 5 HOH 25 225 70 HOH HOH A . L 5 HOH 26 226 68 HOH HOH A . M 5 HOH 1 101 15 HOH HOH B . M 5 HOH 2 102 26 HOH HOH B . M 5 HOH 3 103 4 HOH HOH B . M 5 HOH 4 104 13 HOH HOH B . M 5 HOH 5 105 47 HOH HOH B . M 5 HOH 6 106 2 HOH HOH B . M 5 HOH 7 107 8 HOH HOH B . M 5 HOH 8 108 5 HOH HOH B . M 5 HOH 9 109 11 HOH HOH B . M 5 HOH 10 110 6 HOH HOH B . M 5 HOH 11 111 44 HOH HOH B . M 5 HOH 12 112 22 HOH HOH B . M 5 HOH 13 113 54 HOH HOH B . M 5 HOH 14 114 50 HOH HOH B . M 5 HOH 15 115 72 HOH HOH B . M 5 HOH 16 116 55 HOH HOH B . M 5 HOH 17 117 46 HOH HOH B . M 5 HOH 18 118 37 HOH HOH B . M 5 HOH 19 119 66 HOH HOH B . M 5 HOH 20 120 14 HOH HOH B . M 5 HOH 21 121 60 HOH HOH B . M 5 HOH 22 122 59 HOH HOH B . N 5 HOH 1 201 9 HOH HOH C . N 5 HOH 2 202 16 HOH HOH C . N 5 HOH 3 203 48 HOH HOH C . N 5 HOH 4 204 1 HOH HOH C . N 5 HOH 5 205 38 HOH HOH C . N 5 HOH 6 206 36 HOH HOH C . N 5 HOH 7 207 73 HOH HOH C . N 5 HOH 8 208 28 HOH HOH C . N 5 HOH 9 209 25 HOH HOH C . N 5 HOH 10 210 7 HOH HOH C . N 5 HOH 11 211 74 HOH HOH C . N 5 HOH 12 212 58 HOH HOH C . O 5 HOH 1 201 69 HOH HOH D . O 5 HOH 2 202 49 HOH HOH D . O 5 HOH 3 203 33 HOH HOH D . O 5 HOH 4 204 64 HOH HOH D . O 5 HOH 5 205 29 HOH HOH D . O 5 HOH 6 206 65 HOH HOH D . O 5 HOH 7 207 20 HOH HOH D . O 5 HOH 8 208 51 HOH HOH D . O 5 HOH 9 209 75 HOH HOH D . O 5 HOH 10 210 42 HOH HOH D . O 5 HOH 11 211 67 HOH HOH D . O 5 HOH 12 212 19 HOH HOH D . O 5 HOH 13 213 56 HOH HOH D . O 5 HOH 14 214 18 HOH HOH D . O 5 HOH 15 215 62 HOH HOH D . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4610 ? 1 MORE -42 ? 1 'SSA (A^2)' 5620 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? I K . ? C K 101 ? 1_555 O6 ? A DG 4 ? A DG 4 ? 1_555 68.6 ? 2 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? I K . ? C K 101 ? 1_555 O6 ? B DG 3 ? B DG 3 ? 1_555 74.0 ? 3 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? I K . ? C K 101 ? 1_555 O6 ? B DG 3 ? B DG 3 ? 1_555 88.7 ? 4 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? I K . ? C K 101 ? 1_555 O6 ? B DG 4 ? B DG 4 ? 1_555 123.8 ? 5 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? I K . ? C K 101 ? 1_555 O6 ? B DG 4 ? B DG 4 ? 1_555 66.3 ? 6 O6 ? B DG 3 ? B DG 3 ? 1_555 K ? I K . ? C K 101 ? 1_555 O6 ? B DG 4 ? B DG 4 ? 1_555 73.2 ? 7 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? I K . ? C K 101 ? 1_555 O6 ? C DG 3 ? C DG 3 ? 1_555 125.2 ? 8 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? I K . ? C K 101 ? 1_555 O6 ? C DG 3 ? C DG 3 ? 1_555 151.3 ? 9 O6 ? B DG 3 ? B DG 3 ? 1_555 K ? I K . ? C K 101 ? 1_555 O6 ? C DG 3 ? C DG 3 ? 1_555 73.9 ? 10 O6 ? B DG 4 ? B DG 4 ? 1_555 K ? I K . ? C K 101 ? 1_555 O6 ? C DG 3 ? C DG 3 ? 1_555 86.6 ? 11 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? I K . ? C K 101 ? 1_555 O6 ? C DG 4 ? C DG 4 ? 1_555 148.5 ? 12 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? I K . ? C K 101 ? 1_555 O6 ? C DG 4 ? C DG 4 ? 1_555 98.3 ? 13 O6 ? B DG 3 ? B DG 3 ? 1_555 K ? I K . ? C K 101 ? 1_555 O6 ? C DG 4 ? C DG 4 ? 1_555 136.1 ? 14 O6 ? B DG 4 ? B DG 4 ? 1_555 K ? I K . ? C K 101 ? 1_555 O6 ? C DG 4 ? C DG 4 ? 1_555 70.4 ? 15 O6 ? C DG 3 ? C DG 3 ? 1_555 K ? I K . ? C K 101 ? 1_555 O6 ? C DG 4 ? C DG 4 ? 1_555 80.2 ? 16 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? I K . ? C K 101 ? 1_555 O6 ? D DG 3 ? D DG 3 ? 1_555 82.5 ? 17 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? I K . ? C K 101 ? 1_555 O6 ? D DG 3 ? D DG 3 ? 1_555 124.7 ? 18 O6 ? B DG 3 ? B DG 3 ? 1_555 K ? I K . ? C K 101 ? 1_555 O6 ? D DG 3 ? D DG 3 ? 1_555 127.9 ? 19 O6 ? B DG 4 ? B DG 4 ? 1_555 K ? I K . ? C K 101 ? 1_555 O6 ? D DG 3 ? D DG 3 ? 1_555 152.3 ? 20 O6 ? C DG 3 ? C DG 3 ? 1_555 K ? I K . ? C K 101 ? 1_555 O6 ? D DG 3 ? D DG 3 ? 1_555 83.8 ? 21 O6 ? C DG 4 ? C DG 4 ? 1_555 K ? I K . ? C K 101 ? 1_555 O6 ? D DG 3 ? D DG 3 ? 1_555 82.4 ? 22 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? I K . ? C K 101 ? 1_555 O6 ? D DG 4 ? D DG 4 ? 1_555 91.3 ? 23 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? I K . ? C K 101 ? 1_555 O6 ? D DG 4 ? D DG 4 ? 1_555 63.3 ? 24 O6 ? B DG 3 ? B DG 3 ? 1_555 K ? I K . ? C K 101 ? 1_555 O6 ? D DG 4 ? D DG 4 ? 1_555 151.7 ? 25 O6 ? B DG 4 ? B DG 4 ? 1_555 K ? I K . ? C K 101 ? 1_555 O6 ? D DG 4 ? D DG 4 ? 1_555 96.9 ? 26 O6 ? C DG 3 ? C DG 3 ? 1_555 K ? I K . ? C K 101 ? 1_555 O6 ? D DG 4 ? D DG 4 ? 1_555 133.0 ? 27 O6 ? C DG 4 ? C DG 4 ? 1_555 K ? I K . ? C K 101 ? 1_555 O6 ? D DG 4 ? D DG 4 ? 1_555 57.8 ? 28 O6 ? D DG 3 ? D DG 3 ? 1_555 K ? I K . ? C K 101 ? 1_555 O6 ? D DG 4 ? D DG 4 ? 1_555 71.7 ? 29 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? A DG 5 ? A DG 5 ? 1_555 73.2 ? 30 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? B DG 4 ? B DG 4 ? 1_555 69.7 ? 31 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? B DG 4 ? B DG 4 ? 1_555 89.9 ? 32 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? B DG 5 ? B DG 5 ? 1_555 126.8 ? 33 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? B DG 5 ? B DG 5 ? 1_555 71.3 ? 34 O6 ? B DG 4 ? B DG 4 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? B DG 5 ? B DG 5 ? 1_555 71.9 ? 35 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? C DG 4 ? C DG 4 ? 1_555 107.7 ? 36 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? C DG 4 ? C DG 4 ? 1_555 161.8 ? 37 O6 ? B DG 4 ? B DG 4 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? C DG 4 ? C DG 4 ? 1_555 73.9 ? 38 O6 ? B DG 5 ? B DG 5 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? C DG 4 ? C DG 4 ? 1_555 95.2 ? 39 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? C DG 5 ? C DG 5 ? 1_555 161.0 ? 40 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? C DG 5 ? C DG 5 ? 1_555 107.7 ? 41 O6 ? B DG 4 ? B DG 4 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? C DG 5 ? C DG 5 ? 1_555 128.8 ? 42 O6 ? B DG 5 ? B DG 5 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? C DG 5 ? C DG 5 ? 1_555 69.4 ? 43 O6 ? C DG 4 ? C DG 4 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? C DG 5 ? C DG 5 ? 1_555 77.6 ? 44 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? D DG 4 ? D DG 4 ? 1_555 73.2 ? 45 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? D DG 4 ? D DG 4 ? 1_555 128.9 ? 46 O6 ? B DG 4 ? B DG 4 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? D DG 4 ? D DG 4 ? 1_555 112.7 ? 47 O6 ? B DG 5 ? B DG 5 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? D DG 4 ? D DG 4 ? 1_555 157.8 ? 48 O6 ? C DG 4 ? C DG 4 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? D DG 4 ? D DG 4 ? 1_555 66.8 ? 49 O6 ? C DG 5 ? C DG 5 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? D DG 4 ? D DG 4 ? 1_555 93.2 ? 50 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? D DG 5 ? D DG 5 ? 1_555 89.2 ? 51 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? D DG 5 ? D DG 5 ? 1_555 70.0 ? 52 O6 ? B DG 4 ? B DG 4 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? D DG 5 ? D DG 5 ? 1_555 154.6 ? 53 O6 ? B DG 5 ? B DG 5 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? D DG 5 ? D DG 5 ? 1_555 113.5 ? 54 O6 ? C DG 4 ? C DG 4 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? D DG 5 ? D DG 5 ? 1_555 127.9 ? 55 O6 ? C DG 5 ? C DG 5 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? D DG 5 ? D DG 5 ? 1_555 73.8 ? 56 O6 ? D DG 4 ? D DG 4 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? D DG 5 ? D DG 5 ? 1_555 72.2 ? 57 O ? L HOH . ? A HOH 216 ? 1_555 NA ? H NA . ? A NA 104 ? 1_555 O ? L HOH . ? A HOH 211 ? 1_555 102.5 ? 58 O ? L HOH . ? A HOH 216 ? 1_555 NA ? H NA . ? A NA 104 ? 1_555 O ? L HOH . ? A HOH 221 ? 1_555 165.9 ? 59 O ? L HOH . ? A HOH 211 ? 1_555 NA ? H NA . ? A NA 104 ? 1_555 O ? L HOH . ? A HOH 221 ? 1_555 85.6 ? 60 O ? L HOH . ? A HOH 216 ? 1_555 NA ? H NA . ? A NA 104 ? 1_555 O ? M HOH . ? B HOH 120 ? 6_554 97.4 ? 61 O ? L HOH . ? A HOH 211 ? 1_555 NA ? H NA . ? A NA 104 ? 1_555 O ? M HOH . ? B HOH 120 ? 6_554 89.3 ? 62 O ? L HOH . ? A HOH 221 ? 1_555 NA ? H NA . ? A NA 104 ? 1_555 O ? M HOH . ? B HOH 120 ? 6_554 94.1 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-08-28 2 'Structure model' 1 1 2019-09-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ISSN' 4 2 'Structure model' '_citation.journal_volume' 5 2 'Structure model' '_citation.page_first' 6 2 'Structure model' '_citation.page_last' 7 2 'Structure model' '_citation.pdbx_database_id_DOI' 8 2 'Structure model' '_citation.pdbx_database_id_PubMed' 9 2 'Structure model' '_citation.title' 10 2 'Structure model' '_citation.year' 11 2 'Structure model' '_citation_author.identifier_ORCID' 12 2 'Structure model' '_citation_author.name' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined -9.3017 11.4391 -2.3338 0.4704 ? 0.1018 ? -0.1077 ? 0.3449 ? -0.0326 ? 0.3925 ? 1.8673 ? -0.0107 ? -1.1727 ? 1.5021 ? 2.1515 ? 3.8548 ? -0.3876 ? 0.3703 ? 0.1812 ? 0.2446 ? 0.0871 ? 0.0369 ? -0.7258 ? 0.0488 ? 0.1115 ? 2 'X-RAY DIFFRACTION' ? refined -10.2441 3.6921 -0.2447 0.3096 ? 0.0497 ? -0.0489 ? 0.3886 ? -0.0454 ? 0.3428 ? 5.2080 ? 0.3501 ? 1.4077 ? 3.3668 ? 1.4194 ? 5.8628 ? -0.0007 ? -0.1404 ? 0.0350 ? -0.1085 ? -0.1535 ? -0.1155 ? -0.3611 ? -0.6418 ? 0.2003 ? 3 'X-RAY DIFFRACTION' ? refined -17.0395 0.3157 1.0612 0.3057 ? 0.0690 ? -0.0157 ? 0.6128 ? -0.0662 ? 0.4266 ? 4.1630 ? 1.7533 ? 4.1448 ? 1.6979 ? 0.9025 ? 4.8383 ? 0.2925 ? -0.4246 ? -0.7569 ? 0.2117 ? -0.0840 ? 0.3286 ? 0.3051 ? -1.0382 ? -0.1968 ? 4 'X-RAY DIFFRACTION' ? refined -17.5777 8.2858 -1.4727 0.4261 ? 0.1654 ? -0.0289 ? 0.6655 ? -0.1129 ? 0.4676 ? 1.6657 ? -0.2949 ? 2.7828 ? 4.7907 ? -0.8221 ? 6.4524 ? -0.1966 ? -0.5071 ? 0.3281 ? 0.0031 ? 0.3009 ? 0.0499 ? -0.8191 ? -1.0749 ? -0.0370 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? ? ? ? ? ? ? ? ;(chain 'A' and resid 1 through 7) ; 2 'X-RAY DIFFRACTION' 2 ? ? ? ? ? ? ? ? ? ;(chain 'B' and resid 1 through 7) ; 3 'X-RAY DIFFRACTION' 3 ? ? ? ? ? ? ? ? ? ;(chain 'C' and resid 1 through 7) ; 4 'X-RAY DIFFRACTION' 4 ? ? ? ? ? ? ? ? ? ;(chain 'D' and resid 1 through 7) ; # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.15rc2_3433: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? DIALS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? DIALS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXDE ? ? ? . 4 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? xia2 ? ? ? . 5 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 "O3'" _pdbx_validate_rmsd_bond.auth_asym_id_1 D _pdbx_validate_rmsd_bond.auth_comp_id_1 DG _pdbx_validate_rmsd_bond.auth_seq_id_1 5 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 "C3'" _pdbx_validate_rmsd_bond.auth_asym_id_2 D _pdbx_validate_rmsd_bond.auth_comp_id_2 DG _pdbx_validate_rmsd_bond.auth_seq_id_2 5 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.377 _pdbx_validate_rmsd_bond.bond_target_value 1.419 _pdbx_validate_rmsd_bond.bond_deviation -0.042 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.006 _pdbx_validate_rmsd_bond.linker_flag N # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 226 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.22 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # _ndb_struct_conf_na.entry_id 6RNL _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DT 1 1_555 D DA 2 1_555 -0.087 -0.981 0.238 -5.396 5.592 -173.990 1 B_DT1:DA2_D B 1 ? D 2 ? 21 2 1 A DG 3 1_555 D DG 3 1_555 -1.818 -3.271 0.056 -1.414 1.467 89.475 2 A_DG3:DG3_D A 3 ? D 3 ? 6 3 1 B DG 3 1_555 C DG 3 1_555 1.590 3.166 0.002 1.677 4.645 -93.290 3 B_DG3:DG3_C B 3 ? C 3 ? 6 3 1 B DA 2 1_555 D DT 1 1_555 0.205 1.014 -0.086 8.348 -14.772 168.569 4 B_DA2:DT1_D B 2 ? D 1 ? 21 2 1 B DT 7 1_555 D DT 7 1_555 2.060 3.203 -0.200 9.940 -11.567 173.095 5 B_DT7:DT7_D B 7 ? D 7 ? 13 2 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DT 1 1_555 D DA 2 1_555 A DG 3 1_555 D DG 3 1_555 2.925 -1.113 3.170 -1.332 -0.672 165.419 -0.560 -1.477 3.166 -0.338 0.671 165.420 1 BA_DT1DG3:DG3DA2_DD B 1 ? D 2 ? A 3 ? D 3 ? 1 A DG 3 1_555 D DG 3 1_555 B DG 3 1_555 C DG 3 1_555 1.737 3.234 0.021 -1.465 -5.008 -179.994 -1.617 0.869 0.021 2.504 -0.732 -179.994 2 AB_DG3DG3:DG3DG3_CD A 3 ? D 3 ? B 3 ? C 3 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Biotechnology and Biological Sciences Research Council' 'United Kingdom' BB/K019279/1 1 'Biotechnology and Biological Sciences Research Council' 'United Kingdom' BB/M004635/1 2 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id RKL _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id RKL _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'POTASSIUM ION' K 3 'Ru(tap)2(dppz) complex' RKL 4 'SODIUM ION' NA 5 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #