HEADER HYDROLASE 10-MAY-19 6RO2 TITLE THE CRYSTAL STRUCTURE OF A COMPLEX BETWEEN THE LLFPG PROTEIN, A THF- TITLE 2 DNA AND AN INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FAPY-DNA GLYCOSYLASE,DNA-(APURINIC OR APYRIMIDINIC SITE) COMPND 5 LYASE MUTM,AP LYASE MUTM; COMPND 6 EC: 3.2.2.23,4.2.99.18; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'-D(*CP*TP*CP*TP*TP*TP*(3DR)P*TP*TP*TP*CP*TP*CP*G)- COMPND 10 3'); COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'-D(*GP*CP*GP*AP*GP*AP*AP*AP*CP*AP*AP*AP*GP*A)-3'); COMPND 15 CHAIN: C; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOCOCCUS LACTIS SUBSP. CREMORIS; SOURCE 3 ORGANISM_TAXID: 1359; SOURCE 4 GENE: MUTM, FPG, NCDO763_0992; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630 KEYWDS DNA GLYCOSYLASE COMPLEX, INHIBITOR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR F.COSTE,S.GOFFINONT,B.CASTAING REVDAT 3 07-FEB-24 6RO2 1 REMARK REVDAT 2 19-JUL-23 6RO2 1 REMARK LINK REVDAT 1 15-APR-20 6RO2 0 JRNL AUTH C.RIEUX,S.GOFFINONT,F.COSTE,Z.TBER,J.CROS,V.ROY,M.GUERIN, JRNL AUTH 2 V.GAUDON,S.BOURG,A.BIELA,V.AUCAGNE,L.AGROFOGLIO,N.GARNIER, JRNL AUTH 3 B.CASTAING JRNL TITL THIOPURINE DERIVATIVE-INDUCED FPG/NEI DNA GLYCOSYLASE JRNL TITL 2 INHIBITION: STRUCTURAL, DYNAMIC AND FUNCTIONAL INSIGHTS. JRNL REF INT J MOL SCI V. 21 2020 JRNL REFN ESSN 1422-0067 JRNL PMID 32192183 JRNL DOI 10.3390/IJMS21062058 REMARK 2 REMARK 2 RESOLUTION. 1.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.540 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 100951 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.172 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 5011 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.6504 - 5.6537 0.99 3226 169 0.1480 0.1373 REMARK 3 2 5.6537 - 4.4886 1.00 3256 158 0.1183 0.1335 REMARK 3 3 4.4886 - 3.9215 1.00 3225 148 0.1114 0.1175 REMARK 3 4 3.9215 - 3.5631 1.00 3245 171 0.1254 0.1318 REMARK 3 5 3.5631 - 3.3078 1.00 3214 162 0.1295 0.1241 REMARK 3 6 3.3078 - 3.1128 0.99 3258 147 0.1525 0.1791 REMARK 3 7 3.1128 - 2.9569 1.00 3203 167 0.1702 0.1924 REMARK 3 8 2.9569 - 2.8282 0.99 3220 187 0.1774 0.2190 REMARK 3 9 2.8282 - 2.7193 0.99 3215 161 0.1818 0.2191 REMARK 3 10 2.7193 - 2.6255 0.99 3242 122 0.1891 0.2261 REMARK 3 11 2.6255 - 2.5434 0.99 3175 198 0.1781 0.2373 REMARK 3 12 2.5434 - 2.4707 0.99 3238 152 0.1720 0.1883 REMARK 3 13 2.4707 - 2.4057 0.99 3198 161 0.1639 0.1997 REMARK 3 14 2.4057 - 2.3470 0.99 3223 160 0.1603 0.1673 REMARK 3 15 2.3470 - 2.2936 0.99 3193 180 0.1658 0.1891 REMARK 3 16 2.2936 - 2.2448 0.99 3204 155 0.1613 0.1909 REMARK 3 17 2.2448 - 2.1999 0.99 3220 157 0.1537 0.1848 REMARK 3 18 2.1999 - 2.1584 0.99 3181 176 0.1596 0.1833 REMARK 3 19 2.1584 - 2.1199 0.99 3163 172 0.1729 0.1888 REMARK 3 20 2.1199 - 2.0839 0.99 3188 185 0.1884 0.2130 REMARK 3 21 2.0839 - 2.0503 0.98 3182 171 0.1933 0.2204 REMARK 3 22 2.0503 - 2.0188 0.98 3197 151 0.1965 0.2077 REMARK 3 23 2.0188 - 1.9891 0.98 3157 179 0.1975 0.2235 REMARK 3 24 1.9891 - 1.9611 0.98 3205 162 0.2123 0.2303 REMARK 3 25 1.9611 - 1.9346 0.98 3154 193 0.2193 0.2513 REMARK 3 26 1.9346 - 1.9094 0.98 3150 179 0.2458 0.2459 REMARK 3 27 1.9094 - 1.8856 0.98 3186 189 0.2754 0.3151 REMARK 3 28 1.8856 - 1.8629 0.98 3146 158 0.3065 0.3033 REMARK 3 29 1.8629 - 1.8412 0.98 3206 174 0.3248 0.3554 REMARK 3 30 1.8412 - 1.8205 0.96 3070 167 0.3588 0.3763 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.16 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2825 REMARK 3 ANGLE : 1.087 3921 REMARK 3 CHIRALITY : 0.046 437 REMARK 3 PLANARITY : 0.005 399 REMARK 3 DIHEDRAL : 19.108 1101 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.8365 2.4484 -15.8294 REMARK 3 T TENSOR REMARK 3 T11: 0.2868 T22: 0.3094 REMARK 3 T33: 0.4385 T12: 0.0615 REMARK 3 T13: 0.0454 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 7.8308 L22: 6.7682 REMARK 3 L33: 3.6591 L12: 6.7291 REMARK 3 L13: -3.5417 L23: -4.2261 REMARK 3 S TENSOR REMARK 3 S11: -0.1090 S12: -0.0291 S13: -0.7569 REMARK 3 S21: -0.1002 S22: -0.1578 S23: -0.7855 REMARK 3 S31: 0.1596 S32: 0.3206 S33: 0.3130 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 18 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.1390 4.5964 -13.6884 REMARK 3 T TENSOR REMARK 3 T11: 0.2136 T22: 0.3208 REMARK 3 T33: 0.2928 T12: -0.0020 REMARK 3 T13: -0.0129 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 2.5392 L22: 2.4754 REMARK 3 L33: 2.5383 L12: 0.7207 REMARK 3 L13: -0.7291 L23: -0.6578 REMARK 3 S TENSOR REMARK 3 S11: -0.1614 S12: -0.0363 S13: -0.2220 REMARK 3 S21: -0.0726 S22: 0.1404 S23: 0.1671 REMARK 3 S31: 0.1774 S32: -0.2913 S33: 0.0391 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 73 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.8394 7.2718 -3.7054 REMARK 3 T TENSOR REMARK 3 T11: 0.2446 T22: 0.2757 REMARK 3 T33: 0.2801 T12: 0.0279 REMARK 3 T13: -0.0280 T23: 0.0242 REMARK 3 L TENSOR REMARK 3 L11: 1.4297 L22: 2.8693 REMARK 3 L33: 3.2092 L12: 0.6230 REMARK 3 L13: -0.8882 L23: -2.8586 REMARK 3 S TENSOR REMARK 3 S11: -0.0021 S12: -0.1910 S13: -0.2168 REMARK 3 S21: 0.3413 S22: 0.0143 S23: -0.1405 REMARK 3 S31: -0.1017 S32: 0.0966 S33: 0.0099 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 113 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.2926 17.5509 -29.4949 REMARK 3 T TENSOR REMARK 3 T11: 0.2588 T22: 0.2701 REMARK 3 T33: 0.2771 T12: -0.0283 REMARK 3 T13: -0.0076 T23: -0.0224 REMARK 3 L TENSOR REMARK 3 L11: 1.9847 L22: 1.0810 REMARK 3 L33: 2.3657 L12: 0.8344 REMARK 3 L13: -0.3914 L23: -0.4997 REMARK 3 S TENSOR REMARK 3 S11: -0.1664 S12: 0.2026 S13: 0.0157 REMARK 3 S21: -0.1511 S22: 0.0939 S23: -0.0874 REMARK 3 S31: -0.1370 S32: 0.1387 S33: 0.0671 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 214 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.3205 9.7691 -13.5363 REMARK 3 T TENSOR REMARK 3 T11: 0.3585 T22: 0.5611 REMARK 3 T33: 0.4582 T12: 0.0021 REMARK 3 T13: -0.0322 T23: 0.0965 REMARK 3 L TENSOR REMARK 3 L11: 6.5603 L22: 8.2379 REMARK 3 L33: 1.6373 L12: 5.7514 REMARK 3 L13: 2.4422 L23: 1.7144 REMARK 3 S TENSOR REMARK 3 S11: 0.4469 S12: -0.8429 S13: -0.6376 REMARK 3 S21: 0.6125 S22: -0.5995 S23: -0.7073 REMARK 3 S31: 0.2196 S32: 0.4625 S33: 0.1742 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 240 THROUGH 271 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.7800 26.1101 -19.3231 REMARK 3 T TENSOR REMARK 3 T11: 0.3379 T22: 0.4204 REMARK 3 T33: 0.3754 T12: -0.1215 REMARK 3 T13: -0.0386 T23: 0.0348 REMARK 3 L TENSOR REMARK 3 L11: 2.1632 L22: 3.2444 REMARK 3 L33: 6.4261 L12: 1.5001 REMARK 3 L13: 1.6811 L23: -1.2416 REMARK 3 S TENSOR REMARK 3 S11: -0.0731 S12: 0.1116 S13: -0.0494 REMARK 3 S21: 0.0525 S22: -0.1860 S23: -0.4780 REMARK 3 S31: -0.1883 S32: 0.8132 S33: 0.2521 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 14 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.3690 30.6417 -11.2610 REMARK 3 T TENSOR REMARK 3 T11: 0.4973 T22: 0.4159 REMARK 3 T33: 0.4205 T12: 0.0297 REMARK 3 T13: -0.0381 T23: -0.0726 REMARK 3 L TENSOR REMARK 3 L11: 2.8164 L22: 3.1322 REMARK 3 L33: 2.8776 L12: -0.5654 REMARK 3 L13: -0.1673 L23: 0.4330 REMARK 3 S TENSOR REMARK 3 S11: 0.0263 S12: -0.2644 S13: 0.6229 REMARK 3 S21: -0.2635 S22: -0.0975 S23: 0.1409 REMARK 3 S31: -0.9574 S32: -0.1048 S33: 0.0734 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 15 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.0357 33.5356 -19.2324 REMARK 3 T TENSOR REMARK 3 T11: 0.7703 T22: 0.3644 REMARK 3 T33: 0.4245 T12: 0.1176 REMARK 3 T13: -0.0736 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 7.7043 L22: 8.9613 REMARK 3 L33: 4.9339 L12: 2.8548 REMARK 3 L13: -0.8417 L23: -6.4269 REMARK 3 S TENSOR REMARK 3 S11: 0.1630 S12: 0.1225 S13: 0.3111 REMARK 3 S21: 0.2148 S22: -0.5229 S23: 0.3749 REMARK 3 S31: -0.9705 S32: 1.1778 S33: 0.4503 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 23 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.8463 25.0093 0.3123 REMARK 3 T TENSOR REMARK 3 T11: 0.4887 T22: 0.5997 REMARK 3 T33: 0.5015 T12: -0.0752 REMARK 3 T13: -0.0999 T23: -0.1232 REMARK 3 L TENSOR REMARK 3 L11: 3.4954 L22: 3.6962 REMARK 3 L33: 5.0300 L12: 3.0371 REMARK 3 L13: 1.0004 L23: -0.5208 REMARK 3 S TENSOR REMARK 3 S11: -0.0032 S12: -0.9761 S13: 0.0858 REMARK 3 S21: 0.6019 S22: -0.0332 S23: -0.7942 REMARK 3 S31: -0.5763 S32: 0.8847 S33: -0.0068 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6RO2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1292102286. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53367 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 47.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1PM5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES, CITRATE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.51550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 45.68050 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.68050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.25775 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.68050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 45.68050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 105.77325 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.68050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.68050 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 35.25775 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 45.68050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.68050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 105.77325 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 70.51550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 219 REMARK 465 ARG A 220 REMARK 465 THR A 221 REMARK 465 TYR A 222 REMARK 465 SER A 223 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 15 CE NZ REMARK 470 ARG A 31 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 42 CD CE NZ REMARK 470 ARG A 88 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 130 CD CE NZ REMARK 470 GLU A 138 CG CD OE1 OE2 REMARK 470 LYS A 182 CE NZ REMARK 470 LYS A 213 CD CE NZ REMARK 470 LYS A 230 CD CE NZ REMARK 470 ARG A 247 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 256 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 268 S2 2ON A 302 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 74 -122.08 42.98 REMARK 500 ASP A 107 103.07 -162.23 REMARK 500 VAL A 237 -36.74 -130.94 REMARK 500 CYS A 248 16.72 58.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 651 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A 652 DISTANCE = 6.19 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2ON A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2ON A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2ON B 101 DBREF1 6RO2 A 1 271 UNP A0A165FVI1_LACLC DBREF2 6RO2 A A0A165FVI1 2 272 DBREF 6RO2 B 1 14 PDB 6RO2 6RO2 1 14 DBREF 6RO2 C 15 28 PDB 6RO2 6RO2 15 28 SEQRES 1 A 271 PRO GLU LEU PRO GLU VAL GLU THR VAL ARG ARG GLU LEU SEQRES 2 A 271 GLU LYS ARG ILE VAL GLY GLN LYS ILE ILE SER ILE GLU SEQRES 3 A 271 ALA THR TYR PRO ARG MET VAL LEU THR GLY PHE GLU GLN SEQRES 4 A 271 LEU LYS LYS GLU LEU THR GLY LYS THR ILE GLN GLY ILE SEQRES 5 A 271 SER ARG ARG GLY LYS TYR LEU ILE PHE GLU ILE GLY ASP SEQRES 6 A 271 ASP PHE ARG LEU ILE SER HIS LEU ARG MET GLU GLY LYS SEQRES 7 A 271 TYR ARG LEU ALA THR LEU ASP ALA PRO ARG GLU LYS HIS SEQRES 8 A 271 ASP HIS LEU THR MET LYS PHE ALA ASP GLY GLN LEU ILE SEQRES 9 A 271 TYR ALA ASP VAL ARG LYS PHE GLY THR TRP GLU LEU ILE SEQRES 10 A 271 SER THR ASP GLN VAL LEU PRO TYR PHE LEU LYS LYS LYS SEQRES 11 A 271 ILE GLY PRO GLU PRO THR TYR GLU ASP PHE ASP GLU LYS SEQRES 12 A 271 LEU PHE ARG GLU LYS LEU ARG LYS SER THR LYS LYS ILE SEQRES 13 A 271 LYS PRO TYR LEU LEU GLU GLN THR LEU VAL ALA GLY LEU SEQRES 14 A 271 GLY ASN ILE TYR VAL ASP GLU VAL LEU TRP LEU ALA LYS SEQRES 15 A 271 ILE HIS PRO GLU LYS GLU THR ASN GLN LEU ILE GLU SER SEQRES 16 A 271 SER ILE HIS LEU LEU HIS ASP SER ILE ILE GLU ILE LEU SEQRES 17 A 271 GLN LYS ALA ILE LYS LEU GLY GLY SER SER ILE ARG THR SEQRES 18 A 271 TYR SER ALA LEU GLY SER THR GLY LYS MET GLN ASN GLU SEQRES 19 A 271 LEU GLN VAL TYR GLY LYS THR GLY GLU LYS CYS SER ARG SEQRES 20 A 271 CYS GLY ALA GLU ILE GLN LYS ILE LYS VAL ALA GLY ARG SEQRES 21 A 271 GLY THR HIS PHE CYS PRO VAL CYS GLN GLN LYS SEQRES 1 B 14 DC DT DC DT DT DT 3DR DT DT DT DC DT DC SEQRES 2 B 14 DG SEQRES 1 C 14 DG DC DG DA DG DA DA DA DC DA DA DA DG SEQRES 2 C 14 DA HET 3DR B 7 11 HET GOL A 301 6 HET 2ON A 302 11 HET 2ON A 303 11 HET 2ON B 101 11 HETNAM 3DR 1',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE HETNAM GOL GLYCEROL HETNAM 2ON 2-SULFANYL-1,9-DIHYDRO-6H-PURIN-6-ONE HETSYN 3DR ABASIC DIDEOXYRIBOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 3DR C5 H11 O6 P FORMUL 4 GOL C3 H8 O3 FORMUL 5 2ON 3(C5 H4 N4 O S) FORMUL 8 HOH *281(H2 O) HELIX 1 AA1 GLU A 2 VAL A 18 1 17 HELIX 2 AA2 TYR A 29 VAL A 33 5 5 HELIX 3 AA3 GLY A 36 THR A 45 1 10 HELIX 4 AA4 GLN A 121 LYS A 129 1 9 HELIX 5 AA5 ASP A 141 LYS A 151 1 11 HELIX 6 AA6 LYS A 155 GLU A 162 1 8 HELIX 7 AA7 GLY A 170 ALA A 181 1 12 HELIX 8 AA8 GLU A 188 LEU A 192 5 5 HELIX 9 AA9 ILE A 193 LEU A 214 1 22 HELIX 10 AB1 LYS A 230 LEU A 235 5 6 SHEET 1 AA1 4 SER A 24 ALA A 27 0 SHEET 2 AA1 4 ASP A 92 LYS A 97 -1 O LYS A 97 N SER A 24 SHEET 3 AA1 4 GLN A 102 ALA A 106 -1 O TYR A 105 N HIS A 93 SHEET 4 AA1 4 LYS A 78 ALA A 82 -1 N LYS A 78 O ALA A 106 SHEET 1 AA2 4 ILE A 49 ARG A 55 0 SHEET 2 AA2 4 TYR A 58 ILE A 63 -1 O GLU A 62 N GLN A 50 SHEET 3 AA2 4 PHE A 67 HIS A 72 -1 O LEU A 69 N PHE A 61 SHEET 4 AA2 4 THR A 113 SER A 118 -1 O GLU A 115 N ILE A 70 SHEET 1 AA3 2 GLN A 253 VAL A 257 0 SHEET 2 AA3 2 ARG A 260 PHE A 264 -1 O PHE A 264 N GLN A 253 SSBOND 1 CYS A 245 CYS A 265 1555 1555 2.04 LINK SG CYS A 248 S2 2ON A 303 1555 1555 2.01 LINK O3' DT B 6 P 3DR B 7 1555 1555 1.60 LINK O3' 3DR B 7 P DT B 8 1555 1555 1.60 SITE 1 AC1 9 TYR A 58 HIS A 72 ARG A 74 THR A 113 SITE 2 AC1 9 GLU A 115 LYS A 129 CYS A 248 DT B 9 SITE 3 AC1 9 DT B 10 SITE 1 AC2 4 TRP A 179 LEU A 180 LYS A 182 CYS A 268 SITE 1 AC3 5 CYS A 248 DT B 10 DC B 11 DA C 21 SITE 2 AC3 5 DA C 22 SITE 1 AC4 9 LYS A 57 LEU A 161 ARG A 260 DT B 9 SITE 2 AC4 9 DT B 10 HOH B 205 HOH B 206 HOH B 215 SITE 3 AC4 9 HOH B 217 CRYST1 91.361 91.361 141.031 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010946 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010946 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007091 0.00000