HEADER HYDROLASE 13-MAY-19 6ROT TITLE THROMBIN IN COMPLEX WITH MI2105 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTHROMBIN; COMPND 3 CHAIN: L; COMPND 4 SYNONYM: COAGULATION FACTOR II; COMPND 5 EC: 3.4.21.5; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PROTHROMBIN; COMPND 8 CHAIN: H; COMPND 9 SYNONYM: COAGULATION FACTOR II; COMPND 10 EC: 3.4.21.5; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: HIRUDIN VARIANT-2; COMPND 13 CHAIN: A; COMPND 14 ENGINEERED: YES; COMPND 15 OTHER_DETAILS: HTTPS://SHOP.BACHEM.COM/4014553.HTML COTAINS SULFATED COMPND 16 TYROSINE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 TISSUE: BLOOD; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_COMMON: HUMAN; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 TISSUE: BLOOD; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HIRUDO MEDICINALIS; SOURCE 14 ORGANISM_COMMON: MEDICINAL LEECH; SOURCE 15 ORGANISM_TAXID: 6421 KEYWDS COAGULATION, BLOOD CLOTTING, CONVERTION OF FIBRINOGEN TO FIBRIN, KEYWDS 2 BLOOD CLOTTING INHIBITOR, THROMBIN INHIBITOR, PREORGANIZATION, KEYWDS 3 GLYCOSYLATION, BLOOD, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.SANDNER,A.HEINE,G.KLEBE REVDAT 3 24-JAN-24 6ROT 1 HETSYN REVDAT 2 29-JUL-20 6ROT 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE REVDAT 1 27-NOV-19 6ROT 0 JRNL AUTH A.SANDNER,T.HUFNER-WULSDORF,A.HEINE,T.STEINMETZER,G.KLEBE JRNL TITL STRATEGIES FOR LATE-STAGE OPTIMIZATION: PROFILING JRNL TITL 2 THERMODYNAMICS BY PREORGANIZATION AND SALT BRIDGE SHIELDING. JRNL REF J.MED.CHEM. V. 62 9753 2019 JRNL REFN ISSN 0022-2623 JRNL PMID 31633354 JRNL DOI 10.1021/ACS.JMEDCHEM.9B01196 REMARK 2 REMARK 2 RESOLUTION. 1.34 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.34 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 77794 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.138 REMARK 3 R VALUE (WORKING SET) : 0.137 REMARK 3 FREE R VALUE : 0.157 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3890 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.5394 - 4.0651 0.98 2710 143 0.1500 0.1537 REMARK 3 2 4.0651 - 3.2269 0.99 2696 142 0.1338 0.1566 REMARK 3 3 3.2269 - 2.8191 0.99 2676 141 0.1488 0.1580 REMARK 3 4 2.8191 - 2.5614 0.97 2609 137 0.1396 0.1714 REMARK 3 5 2.5614 - 2.3778 0.99 2624 138 0.1284 0.1557 REMARK 3 6 2.3778 - 2.2376 0.99 2673 141 0.1259 0.1498 REMARK 3 7 2.2376 - 2.1256 0.99 2644 139 0.1162 0.1459 REMARK 3 8 2.1256 - 2.0331 0.99 2650 140 0.1185 0.1252 REMARK 3 9 2.0331 - 1.9548 0.99 2680 141 0.1158 0.1113 REMARK 3 10 1.9548 - 1.8873 0.97 2587 136 0.1169 0.1298 REMARK 3 11 1.8873 - 1.8283 0.98 2638 139 0.1193 0.1411 REMARK 3 12 1.8283 - 1.7761 0.99 2649 139 0.1172 0.1371 REMARK 3 13 1.7761 - 1.7293 0.98 2609 138 0.1157 0.1348 REMARK 3 14 1.7293 - 1.6871 0.99 2690 141 0.1161 0.1565 REMARK 3 15 1.6871 - 1.6488 0.99 2608 137 0.1202 0.1487 REMARK 3 16 1.6488 - 1.6137 0.99 2646 140 0.1191 0.1591 REMARK 3 17 1.6137 - 1.5814 0.99 2664 140 0.1318 0.1924 REMARK 3 18 1.5814 - 1.5515 0.99 2635 138 0.1284 0.1601 REMARK 3 19 1.5515 - 1.5238 0.99 2631 139 0.1400 0.1860 REMARK 3 20 1.5238 - 1.4980 0.98 2624 138 0.1595 0.1654 REMARK 3 21 1.4980 - 1.4738 0.99 2637 139 0.1609 0.2238 REMARK 3 22 1.4738 - 1.4512 0.99 2668 140 0.1719 0.2091 REMARK 3 23 1.4512 - 1.4298 0.99 2579 136 0.1778 0.1958 REMARK 3 24 1.4298 - 1.4097 0.98 2685 141 0.1962 0.2106 REMARK 3 25 1.4097 - 1.3906 0.98 2606 138 0.1990 0.2422 REMARK 3 26 1.3906 - 1.3726 0.99 2645 139 0.2120 0.2323 REMARK 3 27 1.3726 - 1.3554 0.98 2623 138 0.2154 0.2539 REMARK 3 28 1.3554 - 1.3391 0.95 2518 132 0.2358 0.2758 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2591 REMARK 3 ANGLE : 1.042 3528 REMARK 3 CHIRALITY : 0.086 366 REMARK 3 PLANARITY : 0.007 472 REMARK 3 DIHEDRAL : 20.153 1005 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ROT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1292102280. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JAN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : SIGNALLY BENDED SI111-CRYSTAL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 77800 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.340 REMARK 200 RESOLUTION RANGE LOW (A) : 43.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04400 REMARK 200 FOR THE DATA SET : 16.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.34 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.59000 REMARK 200 FOR SHELL : 2.310 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1H8D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20MM SODIUM DIHYDROGEN PHOSPHATE PH REMARK 280 7.5 350MM NACL 27% PEG 8000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 34.96300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.58850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 34.96300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.58850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH H 406 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR L -4 REMARK 465 PHE L -3 REMARK 465 GLY L -2 REMARK 465 SER L -1 REMARK 465 GLY L 0 REMARK 465 ASP L 15 REMARK 465 GLY L 16 REMARK 465 ARG L 17 REMARK 465 THR H 148 REMARK 465 TRP H 149 REMARK 465 GLU H 247 REMARK 465 GLY A 517 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU L 1C OE1 OE2 REMARK 470 LYS L 14A NZ REMARK 470 ARG L 14D NE CZ NH1 NH2 REMARK 470 ILE L 14K CD1 REMARK 470 SER H 36A OG REMARK 470 ARG H 50 NH1 NH2 REMARK 470 ASN H 62 OD1 ND2 REMARK 470 LYS H 87 CE NZ REMARK 470 LYS H 107 NZ REMARK 470 LYS H 110 CD CE NZ REMARK 470 LYS H 145 CE NZ REMARK 470 LYS H 169 NZ REMARK 470 ASP H 186A CG OD1 OD2 REMARK 470 LYS H 236 CD CE NZ REMARK 470 GLN H 239 CG CD OE1 NE2 REMARK 470 LYS H 240 CD CE NZ REMARK 470 PHE H 245 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 521 CG CD OE1 OE2 REMARK 470 GLU A 524 CG CD OE1 OE2 REMARK 470 GLN A 528 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE L 7 -89.67 -129.02 REMARK 500 TYR H 60A 86.51 -153.20 REMARK 500 ASN H 60G 83.03 -155.10 REMARK 500 ASN H 60G 83.03 -158.30 REMARK 500 HIS H 71 -63.68 -130.51 REMARK 500 ILE H 79 -61.82 -124.27 REMARK 500 SER H 195 134.17 -38.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH H 606 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH H 607 DISTANCE = 8.92 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA H 305 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS H 169 O REMARK 620 2 LYS H 169 O 7.0 REMARK 620 3 THR H 172 O 79.3 86.0 REMARK 620 4 PHE H 204A O 19.3 14.8 89.9 REMARK 620 5 HOH H 477 O 19.4 13.5 93.8 5.0 REMARK 620 6 HOH H 485 O 15.6 10.3 90.0 4.8 4.1 REMARK 620 7 HOH H 559 O 18.3 14.0 89.0 1.1 5.4 4.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA H 306 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG H 221A O REMARK 620 2 LYS H 224 O 93.8 REMARK 620 3 HOH H 473 O 105.8 159.2 REMARK 620 4 HOH H 481 O 160.2 70.3 89.0 REMARK 620 5 HOH H 502 O 86.5 91.1 83.3 82.2 REMARK 620 6 HOH H 564 O 98.4 83.9 99.7 91.7 173.2 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5JZY RELATED DB: PDB REMARK 900 SAME LIGAND SERIES IN SAME PROTEIN REMARK 900 RELATED ID: 5LCE RELATED DB: PDB REMARK 900 SAME LIGAND SERIES IN SAME PROTEIN REMARK 900 RELATED ID: 5LPD RELATED DB: PDB REMARK 900 SAME LIGAND SERIES IN SAME PROTEIN REMARK 900 RELATED ID: 3RML RELATED DB: PDB REMARK 900 SAME LIGAND SERIES IN SAME PROTEIN REMARK 900 RELATED ID: 6GBW RELATED DB: PDB REMARK 900 SAME LIGAND SERIES IN SAME PROTEIN REMARK 900 RELATED ID: 5JFD RELATED DB: PDB REMARK 900 SAME LIGAND SERIES IN SAME PROTEIN DBREF 6ROT L -4 17 UNP P00734 THRB_HUMAN 328 363 DBREF 6ROT H 16 247 UNP P00734 THRB_HUMAN 364 622 DBREF 6ROT A 517 528 UNP P09945 HIRV2_HIRME 61 72 SEQADV 6ROT H UNP P00734 THR 512 DELETION SEQADV 6ROT H UNP P00734 ALA 513 DELETION SEQADV 6ROT H UNP P00734 ASN 514 DELETION SEQADV 6ROT H UNP P00734 VAL 515 DELETION SEQADV 6ROT H UNP P00734 GLY 516 DELETION SEQADV 6ROT H UNP P00734 LYS 517 DELETION SEQRES 1 L 36 THR PHE GLY SER GLY GLU ALA ASP CYS GLY LEU ARG PRO SEQRES 2 L 36 LEU PHE GLU LYS LYS SER LEU GLU ASP LYS THR GLU ARG SEQRES 3 L 36 GLU LEU LEU GLU SER TYR ILE ASP GLY ARG SEQRES 1 H 253 ILE VAL GLU GLY SER ASP ALA GLU ILE GLY MET SER PRO SEQRES 2 H 253 TRP GLN VAL MET LEU PHE ARG LYS SER PRO GLN GLU LEU SEQRES 3 H 253 LEU CYS GLY ALA SER LEU ILE SER ASP ARG TRP VAL LEU SEQRES 4 H 253 THR ALA ALA HIS CYS LEU LEU TYR PRO PRO TRP ASP LYS SEQRES 5 H 253 ASN PHE THR GLU ASN ASP LEU LEU VAL ARG ILE GLY LYS SEQRES 6 H 253 HIS SER ARG THR ARG TYR GLU ARG ASN ILE GLU LYS ILE SEQRES 7 H 253 SER MET LEU GLU LYS ILE TYR ILE HIS PRO ARG TYR ASN SEQRES 8 H 253 TRP ARG GLU ASN LEU ASP ARG ASP ILE ALA LEU MET LYS SEQRES 9 H 253 LEU LYS LYS PRO VAL ALA PHE SER ASP TYR ILE HIS PRO SEQRES 10 H 253 VAL CYS LEU PRO ASP ARG GLU THR ALA ALA SER LEU LEU SEQRES 11 H 253 GLN ALA GLY TYR LYS GLY ARG VAL THR GLY TRP GLY ASN SEQRES 12 H 253 LEU LYS GLU THR TRP GLY GLN PRO SER VAL LEU GLN VAL SEQRES 13 H 253 VAL ASN LEU PRO ILE VAL GLU ARG PRO VAL CYS LYS ASP SEQRES 14 H 253 SER THR ARG ILE ARG ILE THR ASP ASN MET PHE CYS ALA SEQRES 15 H 253 GLY TYR LYS PRO ASP GLU GLY LYS ARG GLY ASP ALA CYS SEQRES 16 H 253 GLU GLY ASP SER GLY GLY PRO PHE VAL MET LYS SER PRO SEQRES 17 H 253 PHE ASN ASN ARG TRP TYR GLN MET GLY ILE VAL SER TRP SEQRES 18 H 253 GLY GLU GLY CYS ASP ARG ASP GLY LYS TYR GLY PHE TYR SEQRES 19 H 253 THR HIS VAL PHE ARG LEU LYS LYS TRP ILE GLN LYS VAL SEQRES 20 H 253 ILE ASP GLN PHE GLY GLU SEQRES 1 A 12 GLY ASP PHE GLU GLU ILE PRO GLU GLU TYS LEU GLN MODRES 6ROT TYS A 526 TYR MODIFIED RESIDUE HET TYS A 526 25 HET KDQ H 301 32 HET NAG H 302 14 HET PO4 H 303 5 HET DMS H 304 4 HET NA H 305 1 HET NA H 306 1 HET DMS H 307 8 HET DMS H 308 4 HETNAM TYS O-SULFO-L-TYROSINE HETNAM KDQ (2~{S})-~{N}-[[5-CHLORANYL-2-(HYDROXYMETHYL) HETNAM 2 KDQ PHENYL]METHYL]-1-[2-[(PHENYLMETHYL) HETNAM 3 KDQ SULFONYLAMINO]ETHANOYL]PYRROLIDINE-2-CARBOXAMIDE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM PO4 PHOSPHATE ION HETNAM DMS DIMETHYL SULFOXIDE HETNAM NA SODIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 TYS C9 H11 N O6 S FORMUL 4 KDQ C22 H26 CL N3 O5 S FORMUL 5 NAG C8 H15 N O6 FORMUL 6 PO4 O4 P 3- FORMUL 7 DMS 3(C2 H6 O S) FORMUL 8 NA 2(NA 1+) FORMUL 12 HOH *245(H2 O) HELIX 1 AA1 PHE L 7 SER L 11 5 5 HELIX 2 AA2 THR L 14B TYR L 14J 1 9 HELIX 3 AA3 ALA H 55 CYS H 58 5 4 HELIX 4 AA4 PRO H 60B ASP H 60E 5 4 HELIX 5 AA5 THR H 60I ASN H 62 5 3 HELIX 6 AA6 ASP H 125 LEU H 130 1 9 HELIX 7 AA7 GLU H 164 SER H 171 1 8 HELIX 8 AA8 LYS H 185 GLY H 186C 5 5 HELIX 9 AA9 LEU H 234 GLY H 246 1 13 HELIX 10 AB1 PRO A 523 LEU A 527 5 5 SHEET 1 AA1 7 SER H 20 ASP H 21 0 SHEET 2 AA1 7 GLN H 156 PRO H 161 -1 O VAL H 157 N SER H 20 SHEET 3 AA1 7 LYS H 135 GLY H 140 -1 N VAL H 138 O VAL H 158 SHEET 4 AA1 7 PRO H 198 LYS H 202 -1 O VAL H 200 N ARG H 137 SHEET 5 AA1 7 TRP H 207 TRP H 215 -1 O TYR H 208 N MET H 201 SHEET 6 AA1 7 GLY H 226 HIS H 230 -1 O PHE H 227 N TRP H 215 SHEET 7 AA1 7 MET H 180 ALA H 183 -1 N PHE H 181 O TYR H 228 SHEET 1 AA2 7 GLN H 30 ARG H 35 0 SHEET 2 AA2 7 GLU H 39 LEU H 46 -1 O GLU H 39 N ARG H 35 SHEET 3 AA2 7 TRP H 51 THR H 54 -1 O LEU H 53 N SER H 45 SHEET 4 AA2 7 ALA H 104 LEU H 108 -1 O MET H 106 N VAL H 52 SHEET 5 AA2 7 LYS H 81 ILE H 90 -1 N GLU H 86 O LYS H 107 SHEET 6 AA2 7 LEU H 64 ILE H 68 -1 N ILE H 68 O LYS H 81 SHEET 7 AA2 7 GLN H 30 ARG H 35 -1 N PHE H 34 O LEU H 65 SHEET 1 AA3 2 LEU H 60 TYR H 60A 0 SHEET 2 AA3 2 LYS H 60F ASN H 60G-1 O LYS H 60F N TYR H 60A SSBOND 1 CYS L 1 CYS H 122 1555 1555 2.06 SSBOND 2 CYS H 42 CYS H 58 1555 1555 2.04 SSBOND 3 CYS H 168 CYS H 182 1555 1555 2.03 SSBOND 4 CYS H 191 CYS H 220 1555 1555 2.05 LINK ND2 ASN H 60G C1 NAG H 302 1555 1555 1.57 LINK C GLU A 525 N TYS A 526 1555 1555 1.33 LINK C TYS A 526 N LEU A 527 1555 1555 1.33 LINK O ALYS H 169 NA NA H 305 1555 4546 2.46 LINK O BLYS H 169 NA NA H 305 1555 4546 2.31 LINK O THR H 172 NA NA H 305 1555 4546 2.33 LINK O PHE H 204A NA NA H 305 1555 1555 2.37 LINK O ARG H 221A NA NA H 306 1555 1555 2.34 LINK O LYS H 224 NA NA H 306 1555 1555 2.37 LINK NA NA H 305 O HOH H 477 1555 4556 2.77 LINK NA NA H 305 O HOH H 485 1555 1555 2.37 LINK NA NA H 305 O HOH H 559 1555 4556 2.42 LINK NA NA H 306 O HOH H 473 1555 1555 2.38 LINK NA NA H 306 O HOH H 481 1555 1555 2.45 LINK NA NA H 306 O HOH H 502 1555 1555 2.68 LINK NA NA H 306 O HOH H 564 1555 1555 2.35 CISPEP 1 SER H 36A PRO H 37 0 -5.44 CRYST1 69.926 71.177 73.006 90.00 100.72 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014301 0.000000 0.002708 0.00000 SCALE2 0.000000 0.014049 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013941 0.00000