HEADER CELL CYCLE 13-MAY-19 6ROY TITLE STRUCTURE OF THE N-SH2 DOMAIN OF THE HUMAN TYROSINE-PROTEIN TITLE 2 PHOSPHATASE NON-RECEPTOR TYPE 11 IN COMPLEX WITH THE PHOSPHORYLATED TITLE 3 IMMUNE RECEPTOR TYROSINE-BASED INHIBITORY MOTIF COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 11; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTEIN-TYROSINE PHOSPHATASE 1D,PTP-1D,PROTEIN-TYROSINE COMPND 5 PHOSPHATASE 2C,PTP-2C,SH-PTP2,SHP2,SH-PTP3; COMPND 6 EC: 3.1.3.48; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: IMMUNE RECEPTOR TYROSINE-BASED INHIBITORY MOTIF (ITIM); COMPND 10 CHAIN: D, C; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: CHEMICALLY SYNTHESIZED; TYR-5 PHOSPHORYLATED SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTPN11, PTP2C, SHPTP2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PEMT22; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630 KEYWDS PHOSPHATASE, INHIBITORY PEPTIDE, SIGNAL TRANSDUCER, SRC HOMOLOGY-2 KEYWDS 2 DOMAINS, CELL CYCLE, IMMUNE RECEPTOR TYROSINE-BASED INHIBITORY KEYWDS 3 MOTIF, ITIM EXPDTA X-RAY DIFFRACTION AUTHOR J.KRAUSZE,J.SIKORSKA,T.CARLOMAGNO REVDAT 4 16-OCT-24 6ROY 1 REMARK REVDAT 3 24-JAN-24 6ROY 1 REMARK REVDAT 2 26-FEB-20 6ROY 1 JRNL REVDAT 1 19-FEB-20 6ROY 0 JRNL AUTH M.MARASCO,A.BERTEOTTI,J.WEYERSHAEUSER,N.THORAUSCH, JRNL AUTH 2 J.SIKORSKA,J.KRAUSZE,H.J.BRANDT,J.KIRKPATRICK,P.RIOS, JRNL AUTH 3 W.W.SCHAMEL,M.KOHN,T.CARLOMAGNO JRNL TITL MOLECULAR MECHANISM OF SHP2 ACTIVATION BY PD-1 STIMULATION. JRNL REF SCI ADV V. 6 Y4458 2020 JRNL REFN ESSN 2375-2548 JRNL PMID 32064351 JRNL DOI 10.1126/SCIADV.AAY4458 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0171 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 10137 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 513 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 778 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3030 REMARK 3 BIN FREE R VALUE SET COUNT : 30 REMARK 3 BIN FREE R VALUE : 0.3460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1796 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 26 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.76 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.23000 REMARK 3 B22 (A**2) : -0.23000 REMARK 3 B33 (A**2) : 0.46000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.384 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.251 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.254 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.819 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.918 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.895 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1836 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1634 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2484 ; 1.376 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3790 ; 0.916 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 218 ; 6.472 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 96 ;31.829 ;24.167 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 300 ;14.862 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;20.755 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 258 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2060 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 392 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 884 ; 3.806 ; 0.674 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 883 ; 3.792 ; 0.673 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1098 ; 5.646 ; 0.986 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1099 ; 5.645 ; 0.988 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 952 ; 6.424 ; 1.048 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 950 ; 6.403 ; 1.046 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1386 ; 8.657 ; 1.432 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1977 ; 9.237 ; 8.267 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1977 ; 9.252 ; 8.267 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 3 104 B 3 104 6560 0.08 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 104 REMARK 3 ORIGIN FOR THE GROUP (A): 13.9130 -41.3160 18.8920 REMARK 3 T TENSOR REMARK 3 T11: 0.2704 T22: 0.0945 REMARK 3 T33: 0.0059 T12: -0.0448 REMARK 3 T13: -0.0133 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 2.8880 L22: 7.2848 REMARK 3 L33: 7.3996 L12: 0.6840 REMARK 3 L13: 0.2714 L23: 1.3203 REMARK 3 S TENSOR REMARK 3 S11: 0.1512 S12: -0.2577 S13: 0.0122 REMARK 3 S21: 0.3951 S22: -0.1571 S23: -0.1911 REMARK 3 S31: 0.2534 S32: -0.1759 S33: 0.0059 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D -1 D 7 REMARK 3 ORIGIN FOR THE GROUP (A): 6.9480 -47.7850 14.1760 REMARK 3 T TENSOR REMARK 3 T11: 0.5590 T22: 0.1659 REMARK 3 T33: 0.2635 T12: -0.0623 REMARK 3 T13: -0.0275 T23: -0.0492 REMARK 3 L TENSOR REMARK 3 L11: 3.8962 L22: 3.3524 REMARK 3 L33: 14.8453 L12: 0.1768 REMARK 3 L13: 2.1631 L23: 0.8462 REMARK 3 S TENSOR REMARK 3 S11: -0.0249 S12: -0.1410 S13: -0.1275 REMARK 3 S21: -0.1521 S22: -0.1290 S23: 0.5540 REMARK 3 S31: 0.0685 S32: -0.4773 S33: 0.1540 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 104 REMARK 3 ORIGIN FOR THE GROUP (A): -1.0300 -33.3390 -7.6420 REMARK 3 T TENSOR REMARK 3 T11: 0.2700 T22: 0.0893 REMARK 3 T33: 0.0048 T12: 0.0388 REMARK 3 T13: 0.0122 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 3.2886 L22: 7.7648 REMARK 3 L33: 7.5669 L12: -0.7942 REMARK 3 L13: -0.4137 L23: 1.4740 REMARK 3 S TENSOR REMARK 3 S11: 0.1401 S12: 0.3115 S13: 0.0104 REMARK 3 S21: -0.3950 S22: -0.1737 S23: -0.1713 REMARK 3 S31: -0.2146 S32: -0.1636 S33: 0.0336 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C -1 C 7 REMARK 3 ORIGIN FOR THE GROUP (A): -8.0230 -26.7150 -2.9010 REMARK 3 T TENSOR REMARK 3 T11: 0.4698 T22: 0.2248 REMARK 3 T33: 0.2692 T12: 0.0654 REMARK 3 T13: 0.0449 T23: -0.0270 REMARK 3 L TENSOR REMARK 3 L11: 6.4467 L22: 5.7519 REMARK 3 L33: 11.1357 L12: -0.4862 REMARK 3 L13: -4.1205 L23: -0.2110 REMARK 3 S TENSOR REMARK 3 S11: 0.1128 S12: 0.2774 S13: 0.1074 REMARK 3 S21: 0.3167 S22: -0.0677 S23: 0.5731 REMARK 3 S31: -0.3487 S32: -0.6331 S33: -0.0451 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6ROY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1292102325. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00002 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTALL SI(111) REMARK 200 OPTICS : TOROIDAL FOCUSING MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10722 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.095 REMARK 200 RESOLUTION RANGE LOW (A) : 52.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.80 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.80 REMARK 200 R MERGE FOR SHELL (I) : 1.14900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3TKZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 31.7% (W/V) PEG3350, 0.1 M HEPES, REMARK 280 0.233 M MGSO4, PH 7.1, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 104.11350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 156.17025 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 52.05675 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 PHE D -3 REMARK 465 SER D -2 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 PHE C -3 REMARK 465 SER C -2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 47 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 47 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP D 0 94.02 78.87 REMARK 500 REMARK 500 REMARK: NULL DBREF 6ROY A 3 104 UNP Q06124 PTN11_HUMAN 3 104 DBREF 6ROY D -3 7 PDB 6ROY 6ROY -3 7 DBREF 6ROY B 3 104 UNP Q06124 PTN11_HUMAN 3 104 DBREF 6ROY C -3 7 PDB 6ROY 6ROY -3 7 SEQADV 6ROY MET A 1 UNP Q06124 INITIATING METHIONINE SEQADV 6ROY ALA A 2 UNP Q06124 EXPRESSION TAG SEQADV 6ROY MET B 1 UNP Q06124 INITIATING METHIONINE SEQADV 6ROY ALA B 2 UNP Q06124 EXPRESSION TAG SEQRES 1 A 104 MET ALA SER ARG ARG TRP PHE HIS PRO ASN ILE THR GLY SEQRES 2 A 104 VAL GLU ALA GLU ASN LEU LEU LEU THR ARG GLY VAL ASP SEQRES 3 A 104 GLY SER PHE LEU ALA ARG PRO SER LYS SER ASN PRO GLY SEQRES 4 A 104 ASP PHE THR LEU SER VAL ARG ARG ASN GLY ALA VAL THR SEQRES 5 A 104 HIS ILE LYS ILE GLN ASN THR GLY ASP TYR TYR ASP LEU SEQRES 6 A 104 TYR GLY GLY GLU LYS PHE ALA THR LEU ALA GLU LEU VAL SEQRES 7 A 104 GLN TYR TYR MET GLU HIS HIS GLY GLN LEU LYS GLU LYS SEQRES 8 A 104 ASN GLY ASP VAL ILE GLU LEU LYS TYR PRO LEU ASN CYS SEQRES 1 D 11 PHE SER VAL ASP PTR GLY GLU LEU ASP PHE GLN SEQRES 1 B 104 MET ALA SER ARG ARG TRP PHE HIS PRO ASN ILE THR GLY SEQRES 2 B 104 VAL GLU ALA GLU ASN LEU LEU LEU THR ARG GLY VAL ASP SEQRES 3 B 104 GLY SER PHE LEU ALA ARG PRO SER LYS SER ASN PRO GLY SEQRES 4 B 104 ASP PHE THR LEU SER VAL ARG ARG ASN GLY ALA VAL THR SEQRES 5 B 104 HIS ILE LYS ILE GLN ASN THR GLY ASP TYR TYR ASP LEU SEQRES 6 B 104 TYR GLY GLY GLU LYS PHE ALA THR LEU ALA GLU LEU VAL SEQRES 7 B 104 GLN TYR TYR MET GLU HIS HIS GLY GLN LEU LYS GLU LYS SEQRES 8 B 104 ASN GLY ASP VAL ILE GLU LEU LYS TYR PRO LEU ASN CYS SEQRES 1 C 11 PHE SER VAL ASP PTR GLY GLU LEU ASP PHE GLN HET PTR D 1 16 HET PTR C 1 16 HETNAM PTR O-PHOSPHOTYROSINE HETSYN PTR PHOSPHONOTYROSINE FORMUL 2 PTR 2(C9 H12 N O6 P) FORMUL 5 HOH *26(H2 O) HELIX 1 AA1 THR A 12 GLY A 24 1 13 HELIX 2 AA2 THR A 73 HIS A 84 1 12 HELIX 3 AA3 HIS A 85 LEU A 88 5 4 HELIX 4 AA4 THR B 12 GLY B 24 1 13 HELIX 5 AA5 THR B 73 HIS B 84 1 12 HELIX 6 AA6 HIS B 85 LEU B 88 5 4 SHEET 1 AA1 5 TYR A 63 ASP A 64 0 SHEET 2 AA1 5 ALA A 50 ASN A 58 -1 N GLN A 57 O ASP A 64 SHEET 3 AA1 5 PHE A 41 ARG A 47 -1 N ARG A 47 O ALA A 50 SHEET 4 AA1 5 SER A 28 PRO A 33 -1 N SER A 28 O ARG A 46 SHEET 5 AA1 5 TYR A 100 PRO A 101 1 O TYR A 100 N PHE A 29 SHEET 1 AA2 2 LYS A 89 GLU A 90 0 SHEET 2 AA2 2 LEU D 4 ASP D 5 -1 O ASP D 5 N LYS A 89 SHEET 1 AA3 5 TYR B 63 ASP B 64 0 SHEET 2 AA3 5 ALA B 50 ASN B 58 -1 N GLN B 57 O ASP B 64 SHEET 3 AA3 5 PHE B 41 ARG B 47 -1 N ARG B 47 O ALA B 50 SHEET 4 AA3 5 SER B 28 PRO B 33 -1 N SER B 28 O ARG B 46 SHEET 5 AA3 5 TYR B 100 PRO B 101 1 O TYR B 100 N PHE B 29 SHEET 1 AA4 2 LYS B 89 GLU B 90 0 SHEET 2 AA4 2 LEU C 4 ASP C 5 -1 O ASP C 5 N LYS B 89 LINK C ASP D 0 N PTR D 1 1555 1555 1.33 LINK C PTR D 1 N GLY D 2 1555 1555 1.33 LINK C ASP C 0 N PTR C 1 1555 1555 1.33 LINK C PTR C 1 N GLY C 2 1555 1555 1.33 CISPEP 1 VAL D -1 ASP D 0 0 7.89 CRYST1 29.856 29.856 208.227 90.00 90.00 90.00 P 43 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.033494 0.000000 0.000000 0.00000 SCALE2 0.000000 0.033494 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004802 0.00000