HEADER OXYGEN TRANSPORT 13-MAY-19 6RP5 TITLE CRYSTAL STRUCTURE OF MONOCARBOXYLATED HEMOGLOBIN FROM THE SUB- TITLE 2 ANTARCTIC FISH ELEGINOPS MACLOVINUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMOGLOBIN SUBUNIT ALPHA 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ALPHA-1-GLOBIN,HEMOGLOBIN ALPHA-1 CHAIN; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HEMOGLOBIN SUBUNIT BETA-1; COMPND 7 CHAIN: B; COMPND 8 SYNONYM: BETA-1-GLOBIN,HEMOGLOBIN BETA-1 CHAIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ELEGINOPS MACLOVINUS; SOURCE 3 ORGANISM_COMMON: PATAGONIAN BLENNIE; SOURCE 4 ORGANISM_TAXID: 56733; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: ELEGINOPS MACLOVINUS; SOURCE 7 ORGANISM_COMMON: PATAGONIAN BLENNIE; SOURCE 8 ORGANISM_TAXID: 56733 KEYWDS HEMOGLOBIN, SUB-ANTARCTIC FISH, ELEGINOPS MACLOVINUS, OXYGEN KEYWDS 2 TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR N.BALASCO,L.VITAGLIANO,A.MERLINO,C.VERDE,L.MAZZARELLA,A.VERGARA REVDAT 2 24-JAN-24 6RP5 1 REMARK REVDAT 1 25-DEC-19 6RP5 0 JRNL AUTH N.BALASCO,L.VITAGLIANO,A.MERLINO,C.VERDE,L.MAZZARELLA, JRNL AUTH 2 A.VERGARA JRNL TITL THE UNIQUE STRUCTURAL FEATURES OF CARBONMONOXY HEMOGLOBIN JRNL TITL 2 FROM THE SUB-ANTARCTIC FISH ELEGINOPS MACLOVINUS. JRNL REF SCI REP V. 9 18987 2019 JRNL REFN ESSN 2045-2322 JRNL PMID 31831781 JRNL DOI 10.1038/S41598-019-55331-3 REMARK 2 REMARK 2 RESOLUTION. 1.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 79.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 84.1 REMARK 3 NUMBER OF REFLECTIONS : 55106 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2917 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.49 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.53 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3274 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 68.25 REMARK 3 BIN R VALUE (WORKING SET) : 0.3720 REMARK 3 BIN FREE R VALUE SET COUNT : 166 REMARK 3 BIN FREE R VALUE : 0.3700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2214 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 116 REMARK 3 SOLVENT ATOMS : 386 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.068 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.070 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.058 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.679 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2444 ; 0.022 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2343 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3343 ; 2.136 ; 2.021 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5395 ; 1.117 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 300 ; 4.888 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 93 ;42.350 ;23.978 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 415 ;14.208 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;17.412 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 368 ; 0.151 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2724 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 560 ; 0.007 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1161 ; 2.247 ; 3.044 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1159 ; 2.225 ; 3.041 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1448 ; 2.829 ; 4.554 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1449 ; 2.837 ; 4.556 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1283 ; 4.473 ; 3.486 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1260 ; 4.364 ; 3.451 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1857 ; 6.395 ; 4.969 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3287 ; 7.470 ;27.409 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3052 ; 7.251 ;25.987 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6RP5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1292102323. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 5.2R REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 130 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66710 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.490 REMARK 200 RESOLUTION RANGE LOW (A) : 79.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4ESA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CO ATMOSPHERE , 20 MG/ML PROTEIN, 1.8 REMARK 280 M AMMONIUM SULFATE, MICRODIALYSIS, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.23867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 112.47733 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 84.35800 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 140.59667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 28.11933 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 56.23867 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 112.47733 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 140.59667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 84.35800 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 28.11933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -229.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 91.70200 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 84.35800 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 439 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 140 CZ NH1 NH2 REMARK 470 GLU B 2 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C CMO B 201 FE HEM B 202 1.81 REMARK 500 C CMO A 201 FE HEM A 202 1.85 REMARK 500 O HOH B 360 O HOH B 450 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 6 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG B 30 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 76 77.04 -159.42 REMARK 500 ASN B 77 59.19 -140.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 202 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 88 NE2 REMARK 620 2 HEM A 202 NA 88.4 REMARK 620 3 HEM A 202 NB 87.8 88.8 REMARK 620 4 HEM A 202 NC 91.2 179.6 91.0 REMARK 620 5 HEM A 202 ND 92.0 90.9 179.7 89.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 202 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 92 NE2 REMARK 620 2 HEM B 202 NA 88.6 REMARK 620 3 HEM B 202 NB 88.8 90.3 REMARK 620 4 HEM B 202 NC 91.0 178.8 88.5 REMARK 620 5 HEM B 202 ND 90.5 89.4 179.3 91.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CMO A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DTN A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CMO B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 204 DBREF 6RP5 A 1 142 UNP K7N5M5 HBA1_ELEMC 1 142 DBREF 6RP5 B 1 144 UNP K7N5M6 HBB1_ELEMC 1 144 SEQADV 6RP5 ACE A 0 UNP K7N5M5 ACETYLATION SEQRES 1 A 143 ACE SER LEU SER ASP LYS ASP LYS ALA ALA VAL LYS LEU SEQRES 2 A 143 LEU TRP SER LYS ILE SER LYS SER SER ASP ALA ILE GLY SEQRES 3 A 143 ASN ASP ALA LEU SER ARG MET ILE VAL VAL TYR PRO GLN SEQRES 4 A 143 THR LYS THR TYR PHE ALA HIS TRP PRO ASP LEU SER PRO SEQRES 5 A 143 GLY SER PRO HIS VAL LYS ALA HIS GLY LYS THR VAL MET SEQRES 6 A 143 GLY GLY ILE ALA LEU ALA VAL SER LYS ILE ASP ASP LEU SEQRES 7 A 143 ARG ALA GLY LEU LEU ASP LEU SER GLU GLN HIS ALA TYR SEQRES 8 A 143 LYS LEU ARG VAL ASP PRO ALA ASN PHE LYS ILE LEU SER SEQRES 9 A 143 HIS CYS ILE LEU VAL VAL ILE SER MET MET PHE PRO LYS SEQRES 10 A 143 GLU PHE THR PRO GLU ALA HIS VAL SER LEU ASP LYS PHE SEQRES 11 A 143 LEU SER GLY VAL SER LEU ALA LEU SER GLU ARG TYR ARG SEQRES 1 B 144 VAL GLU TRP THR ASP GLN GLU ARG ALA THR ILE SER SER SEQRES 2 B 144 ILE PHE GLY SER LEU ASP TYR ASP ASP ILE GLY PRO LYS SEQRES 3 B 144 ALA LEU SER ARG CYS LEU ILE VAL TYR PRO TRP THR GLN SEQRES 4 B 144 ARG HIS PHE GLY SER PHE GLY ASN LEU TYR ASN ALA GLU SEQRES 5 B 144 ALA ILE ILE GLY ASN GLN LYS VAL ALA ALA HIS GLY ILE SEQRES 6 B 144 LYS VAL LEU HIS GLY LEU ASP ARG ALA VAL LYS ASN MET SEQRES 7 B 144 ASP ASN ILE LYS GLU ILE TYR ALA GLU LEU SER ILE LEU SEQRES 8 B 144 HIS SER GLU LYS LEU HIS VAL ASP PRO ASP ASN PHE LYS SEQRES 9 B 144 LEU LEU ALA ASP CYS LEU THR ILE VAL VAL ALA ALA LYS SEQRES 10 B 144 MET GLY SER GLY PHE ASN PRO GLY THR GLN ALA THR PHE SEQRES 11 B 144 GLN LYS PHE LEU ALA VAL VAL VAL SER ALA LEU GLY LYS SEQRES 12 B 144 GLN HET ACE A 0 3 HET CMO A 201 2 HET HEM A 202 43 HET SO4 A 203 5 HET SO4 A 204 5 HET DTN A 205 6 HET CMO B 201 2 HET HEM B 202 43 HET SO4 B 203 5 HET SO4 B 204 5 HETNAM ACE ACETYL GROUP HETNAM CMO CARBON MONOXIDE HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM SO4 SULFATE ION HETNAM DTN DITHIONITE HETSYN HEM HEME FORMUL 1 ACE C2 H4 O FORMUL 3 CMO 2(C O) FORMUL 4 HEM 2(C34 H32 FE N4 O4) FORMUL 5 SO4 4(O4 S 2-) FORMUL 7 DTN O4 S2 2- FORMUL 12 HOH *386(H2 O) HELIX 1 AA1 SER A 3 SER A 18 1 16 HELIX 2 AA2 SER A 20 TYR A 36 1 17 HELIX 3 AA3 THR A 39 ALA A 44 1 6 HELIX 4 AA4 TRP A 46 SER A 50 5 5 HELIX 5 AA5 VAL A 56 LYS A 73 1 18 HELIX 6 AA6 ASP A 76 TYR A 90 1 15 HELIX 7 AA7 ASP A 95 ALA A 97 5 3 HELIX 8 AA8 ASN A 98 PHE A 114 1 17 HELIX 9 AA9 THR A 119 GLU A 139 1 21 HELIX 10 AB1 ARG A 140 ARG A 142 5 3 HELIX 11 AB2 THR B 4 SER B 17 1 14 HELIX 12 AB3 ASP B 19 TYR B 35 1 17 HELIX 13 AB4 PRO B 36 ARG B 40 5 5 HELIX 14 AB5 ASN B 50 GLY B 56 1 7 HELIX 15 AB6 ASN B 57 ASN B 77 1 21 HELIX 16 AB7 ASN B 80 LYS B 95 1 16 HELIX 17 AB8 ASP B 99 GLY B 119 1 21 HELIX 18 AB9 SER B 120 PHE B 122 5 3 HELIX 19 AC1 ASN B 123 LYS B 143 1 21 LINK C ACE A 0 N SER A 1 1555 1555 1.33 LINK NE2 HIS A 88 FE HEM A 202 1555 1555 2.13 LINK NE2 HIS B 92 FE HEM B 202 1555 1555 2.16 SITE 1 AC1 2 VAL A 63 HEM A 202 SITE 1 AC2 17 MET A 32 TYR A 42 PHE A 43 HIS A 45 SITE 2 AC2 17 TRP A 46 THR A 62 LEU A 84 HIS A 88 SITE 3 AC2 17 LEU A 92 VAL A 94 ASN A 98 LEU A 102 SITE 4 AC2 17 LEU A 137 CMO A 201 HOH A 310 HOH A 319 SITE 5 AC2 17 TYR B 49 SITE 1 AC3 4 TRP A 46 HIS A 59 HOH A 310 ASN B 50 SITE 1 AC4 6 VAL A 56 LYS A 57 ALA A 58 HOH A 367 SITE 2 AC4 6 SER B 13 HOH B 354 SITE 1 AC5 5 PRO A 51 GLY A 52 HOH A 401 ASN B 123 SITE 2 AC5 5 PRO B 124 SITE 1 AC6 3 HIS B 63 VAL B 67 HEM B 202 SITE 1 AC7 12 HIS B 41 LYS B 59 HIS B 63 LEU B 91 SITE 2 AC7 12 HIS B 92 LEU B 96 PHE B 103 LEU B 141 SITE 3 AC7 12 CMO B 201 HOH B 312 HOH B 325 HOH B 403 SITE 1 AC8 12 GLY B 43 SER B 44 PHE B 45 GLY B 46 SITE 2 AC8 12 ASN B 57 LYS B 59 HOH B 314 HOH B 317 SITE 3 AC8 12 HOH B 318 HOH B 362 HOH B 388 HOH B 402 SITE 1 AC9 6 LYS A 57 SER B 17 LYS B 117 MET B 118 SITE 2 AC9 6 HOH B 302 HOH B 338 CRYST1 91.702 91.702 168.716 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010905 0.006296 0.000000 0.00000 SCALE2 0.000000 0.012592 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005927 0.00000 HETATM 1 C ACE A 0 26.642 6.998 14.622 1.00 48.04 C HETATM 2 O ACE A 0 26.786 7.130 15.827 1.00 39.14 O HETATM 3 CH3 ACE A 0 27.630 7.611 13.659 1.00 40.20 C