HEADER OXIDOREDUCTASE 21-MAY-19 6RSJ TITLE CYTOCHROME C CO-CRYSTALLIZED WITH 20 EQ. SULFONATO-CALIX[8]ARENE AND TITLE 2 SOAKED WITH 25 EQ. SPERMINE - STRUCTURE I COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C ISO-1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 GENE: CYC1, YJR048W, J1653; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MOLECULAR GLUES, MOLECULAR SWITCH, SPERMINE, POLYAMINE, CALIXARENE, KEYWDS 2 SUPRAMOLECULAR CHEMISTRY, OXIDOREDUCTASE, CYTC EXPDTA X-RAY DIFFRACTION AUTHOR S.ENGILBERGE,P.B.CROWLEY REVDAT 3 24-JAN-24 6RSJ 1 REMARK REVDAT 2 23-OCT-19 6RSJ 1 JRNL REVDAT 1 18-SEP-19 6RSJ 0 JRNL AUTH S.ENGILBERGE,M.L.RENNIE,E.DUMONT,P.B.CROWLEY JRNL TITL TUNING PROTEIN FRAMEWORKS VIA AUXILIARY SUPRAMOLECULAR JRNL TITL 2 INTERACTIONS. JRNL REF ACS NANO V. 13 10343 2019 JRNL REFN ESSN 1936-086X JRNL PMID 31490058 JRNL DOI 10.1021/ACSNANO.9B04115 REMARK 2 REMARK 2 RESOLUTION. 2.27 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.27 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 21271 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1061 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.27 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.28 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.60 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 426 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2091 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 401 REMARK 3 BIN R VALUE (WORKING SET) : 0.2057 REMARK 3 BIN FREE R VALUE : 0.2713 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.87 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 846 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 399 REMARK 3 SOLVENT ATOMS : 146 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 62.11 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.68150 REMARK 3 B22 (A**2) : 3.68150 REMARK 3 B33 (A**2) : -7.36300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.250 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.145 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.132 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.130 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.123 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1304 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 1827 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 438 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 2 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 176 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 1304 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 109 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 1427 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.16 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.51 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.18 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 31.3073 -5.5822 -21.3031 REMARK 3 T TENSOR REMARK 3 T11: -0.0479 T22: -0.0074 REMARK 3 T33: -0.0318 T12: -0.0075 REMARK 3 T13: -0.0075 T23: -0.0331 REMARK 3 L TENSOR REMARK 3 L11: 1.8569 L22: 1.9969 REMARK 3 L33: 1.5121 L12: 0.8848 REMARK 3 L13: 0.3340 L23: 0.1609 REMARK 3 S TENSOR REMARK 3 S11: -0.0159 S12: 0.0150 S13: 0.0752 REMARK 3 S21: -0.0451 S22: -0.0399 S23: 0.0817 REMARK 3 S31: -0.0633 S32: -0.0589 S33: 0.0559 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6RSJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1292102048. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-SEP-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98008 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21272 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.268 REMARK 200 RESOLUTION RANGE LOW (A) : 71.737 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 26.50 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.27 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.31 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.80100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6GD9 REMARK 200 REMARK 200 REMARK: RED DIAMOND REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 85.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.10 M HEPES PH 7.5, 0.15 M NACL, 2.2 REMARK 280 M AMMONIUM SULFATE, 0.04 M SULFONATO-CALIX[8]ARENE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.80600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 50.72600 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 50.72600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 64.20900 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 50.72600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 50.72600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 21.40300 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 50.72600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.72600 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 64.20900 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 50.72600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.72600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 21.40300 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 42.80600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 27 -132.94 -111.14 REMARK 500 ASN A 70 88.17 -159.24 REMARK 500 ALA A 81 44.86 -93.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 18 NE2 REMARK 620 2 HEC A 201 NA 89.4 REMARK 620 3 HEC A 201 NB 89.9 89.0 REMARK 620 4 HEC A 201 NC 91.7 178.8 90.6 REMARK 620 5 HEC A 201 ND 90.5 89.7 178.6 90.7 REMARK 620 6 HOH A 357 O 177.4 91.2 87.6 87.7 92.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEC A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EVB A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EVB A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EVB A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SPM A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SPM A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 213 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6GD9 RELATED DB: PDB REMARK 900 6GD9 CONTAINS THE SAME PROTEIN COMPLEXED WITH SULFONATO-CALIX[8] REMARK 900 ARENE WITHOUT SPERMINE REMARK 900 RELATED ID: 6GDA RELATED DB: PDB REMARK 900 6GDA CONTAINS THE SAME PROTEIN COMPLEXED WITH SULFONATO-CALIX[8] REMARK 900 ARENE WITH SPERMINE AT A LOWER RESOLUTION DBREF 6RSJ A -4 103 UNP P00044 CYC1_YEAST 3 109 SEQADV 6RSJ ALA A -5 UNP P00044 EXPRESSION TAG SEQADV 6RSJ THR A 102 UNP P00044 CYS 108 ENGINEERED MUTATION SEQRES 1 A 108 ALA GLU PHE LYS ALA GLY SER ALA LYS LYS GLY ALA THR SEQRES 2 A 108 LEU PHE LYS THR ARG CYS LEU GLN CYS HIS THR VAL GLU SEQRES 3 A 108 LYS GLY GLY PRO HIS LYS VAL GLY PRO ASN LEU HIS GLY SEQRES 4 A 108 ILE PHE GLY ARG HIS SER GLY GLN ALA GLU GLY TYR SER SEQRES 5 A 108 TYR THR ASP ALA ASN ILE LYS LYS ASN VAL LEU TRP ASP SEQRES 6 A 108 GLU ASN ASN MET SER GLU TYR LEU THR ASN PRO LYS LYS SEQRES 7 A 108 TYR ILE PRO GLY THR LYS MET ALA PHE GLY GLY LEU LYS SEQRES 8 A 108 LYS GLU LYS ASP ARG ASN ASP LEU ILE THR TYR LEU LYS SEQRES 9 A 108 LYS ALA THR GLU HET HEC A 201 43 HET EVB A 202 96 HET EVB A 203 96 HET EVB A 204 96 HET SPM A 205 14 HET SPM A 206 28 HET SO4 A 207 5 HET SO4 A 208 5 HET GOL A 209 6 HET GOL A 210 6 HET GOL A 211 6 HET GOL A 212 6 HET GOL A 213 6 HETNAM HEC HEME C HETNAM EVB SULFONATO-CALIX[8]ARENE HETNAM SPM SPERMINE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 HEC C34 H34 FE N4 O4 FORMUL 3 EVB 3(C56 H48 O32 S8) FORMUL 6 SPM 2(C10 H26 N4) FORMUL 8 SO4 2(O4 S 2-) FORMUL 10 GOL 5(C3 H8 O3) FORMUL 15 HOH *146(H2 O) HELIX 1 AA1 SER A 2 CYS A 14 1 13 HELIX 2 AA2 THR A 49 ASN A 56 1 8 HELIX 3 AA3 ASP A 60 ASN A 70 1 11 HELIX 4 AA4 ASN A 70 ILE A 75 1 6 HELIX 5 AA5 LYS A 87 THR A 102 1 16 LINK SG CYS A 14 CAB HEC A 201 1555 1555 1.81 LINK SG CYS A 17 CAC HEC A 201 1555 1555 1.85 LINK NE2 HIS A 18 FE HEC A 201 1555 1555 2.09 LINK FE HEC A 201 O HOH A 357 1555 1555 2.14 SITE 1 AC1 24 ARG A 13 CYS A 14 CYS A 17 HIS A 18 SITE 2 AC1 24 VAL A 28 ILE A 35 SER A 40 GLY A 41 SITE 3 AC1 24 TYR A 46 TYR A 48 THR A 49 ASN A 52 SITE 4 AC1 24 TRP A 59 MET A 64 TYR A 67 LEU A 68 SITE 5 AC1 24 THR A 78 LYS A 79 MET A 80 ALA A 81 SITE 6 AC1 24 PHE A 82 HOH A 317 HOH A 334 HOH A 357 SITE 1 AC2 32 LYS A 11 THR A 12 LEU A 15 GLN A 16 SITE 2 AC2 32 THR A 19 GLU A 21 GLY A 24 PRO A 25 SITE 3 AC2 32 LYS A 27 HIS A 39 GLY A 41 GLN A 42 SITE 4 AC2 32 TYR A 46 SER A 47 TYR A 48 ASP A 50 SITE 5 AC2 32 ILE A 53 LYS A 54 ASN A 56 GOL A 213 SITE 6 AC2 32 HOH A 303 HOH A 306 HOH A 307 HOH A 313 SITE 7 AC2 32 HOH A 314 HOH A 319 HOH A 327 HOH A 336 SITE 8 AC2 32 HOH A 341 HOH A 356 HOH A 359 HOH A 360 SITE 1 AC3 22 ALA A -1 ALA A 3 LYS A 4 LYS A 5 SITE 2 AC3 22 ALA A 7 THR A 8 THR A 96 TYR A 97 SITE 3 AC3 22 LYS A 100 SPM A 205 SPM A 206 HOH A 302 SITE 4 AC3 22 HOH A 310 HOH A 316 HOH A 319 HOH A 322 SITE 5 AC3 22 HOH A 324 HOH A 337 HOH A 347 HOH A 369 SITE 6 AC3 22 HOH A 373 HOH A 386 SITE 1 AC4 16 ARG A 13 THR A 69 ASN A 70 LYS A 72 SITE 2 AC4 16 LYS A 73 MET A 80 ALA A 81 PHE A 82 SITE 3 AC4 16 GLY A 83 GLY A 84 LEU A 85 LYS A 86 SITE 4 AC4 16 HOH A 318 HOH A 343 HOH A 364 HOH A 366 SITE 1 AC5 2 EVB A 203 SO4 A 207 SITE 1 AC6 2 EVB A 203 SO4 A 208 SITE 1 AC7 1 SPM A 205 SITE 1 AC8 1 SPM A 206 SITE 1 AC9 5 ALA A 51 LYS A 54 HOH A 307 HOH A 349 SITE 2 AC9 5 HOH A 350 SITE 1 AD1 6 GLY A 23 GLY A 24 HIS A 26 GLU A 44 SITE 2 AD1 6 HOH A 368 HOH A 389 SITE 1 AD2 4 LYS A 86 LYS A 87 GLU A 88 LYS A 89 SITE 1 AD3 4 ALA A -5 GLU A -4 GLU A 88 ARG A 91 SITE 1 AD4 3 LYS A 27 EVB A 202 HOH A 311 CRYST1 101.452 101.452 85.612 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009857 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009857 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011681 0.00000