HEADER ANTIMICROBIAL PROTEIN 21-MAY-19 6RSM TITLE SOLUTION NMR STRUCTURE OF THE PEPTIDE 12530 FROM MEDICINAL LEECH TITLE 2 HIRUDO MEDICINALIS IN DODECYLPHOSPHOCHOLINE MICELLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDE 12530; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HIRUDO MEDICINALIS; SOURCE 4 ORGANISM_TAXID: 6421 KEYWDS ANTIMICROBIAL PEPTIDES, MEDICINAL LEECH, HIRUDO MEDICINALIS, GENOME, KEYWDS 2 PREDICTION ALGORITHM, DOOECYLPHOSPHOCHOLINE MICELLES, ANTIMICROBIAL KEYWDS 3 PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR I.A.TALYZINA,K.D.NADEZHDIN,E.N.GRAFSKAIA,A.S.ARSENIEV,V.N.LAZAREV REVDAT 2 14-JUN-23 6RSM 1 REMARK REVDAT 1 24-JUL-19 6RSM 0 JRNL AUTH E.N.GRAFSKAIA,K.D.NADEZHDIN,I.A.TALYZINA,N.F.POLINA, JRNL AUTH 2 O.V.PODGORNY,E.R.PAVLOVA,P.V.BASHKIROV,D.D.KHARLAMPIEVA, JRNL AUTH 3 P.A.BOBROVSKY,I.A.LATSIS,V.A.MANUVERA,V.V.BABENKO, JRNL AUTH 4 V.M.TRUKHAN,A.S.ARSENIEV,D.V.KLINOV,V.N.LAZAREV JRNL TITL MEDICINAL LEECH ANTIMICROBIAL PEPTIDES LACKING TOXICITY JRNL TITL 2 REPRESENT A PROMISING ALTERNATIVE STRATEGY TO COMBAT JRNL TITL 3 ANTIBIOTIC-RESISTANT PATHOGENS. JRNL REF EUR.J.MED.CHEM. V. 180 143 2019 JRNL REFN ISSN 0223-5234 JRNL PMID 31302447 JRNL DOI 10.1016/J.EJMECH.2019.06.080 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PSVS REMARK 3 AUTHORS : BHATTACHARYA AND MONTELIONE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6RSM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1292102515. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 4 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM PEPTIDE 12530, 100 MM REMARK 210 DODECYLPHOSPHOCHOLINE, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 2D 1H-1H TOCSY; REMARK 210 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 3.98.5, CARA, TOPSPIN, REMARK 210 TALOS REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 1690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 3 43.04 -92.90 REMARK 500 1 ILE A 6 32.41 -94.03 REMARK 500 2 LYS A 3 40.07 -98.01 REMARK 500 3 LYS A 3 79.92 51.60 REMARK 500 3 LYS A 4 172.70 -54.98 REMARK 500 4 PHE A 2 -175.98 60.39 REMARK 500 5 PHE A 2 -178.33 61.64 REMARK 500 5 LYS A 4 178.85 -56.97 REMARK 500 6 LYS A 3 83.95 51.87 REMARK 500 7 LYS A 3 66.95 -106.98 REMARK 500 7 LYS A 4 55.80 -112.92 REMARK 500 9 LYS A 3 42.24 -109.04 REMARK 500 11 LYS A 3 44.29 -107.41 REMARK 500 13 PHE A 2 24.30 -146.15 REMARK 500 13 LYS A 3 72.43 51.86 REMARK 500 15 LYS A 3 72.72 -109.83 REMARK 500 16 PHE A 2 177.30 60.63 REMARK 500 16 LYS A 3 77.76 51.85 REMARK 500 16 LYS A 4 -175.92 53.94 REMARK 500 18 PHE A 2 174.64 61.33 REMARK 500 19 PHE A 2 177.53 58.53 REMARK 500 19 LYS A 4 59.68 -118.40 REMARK 500 19 ILE A 6 122.59 66.25 REMARK 500 20 LYS A 4 -175.95 53.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34406 RELATED DB: BMRB REMARK 900 SOLUTION NMR STRUCTURE OF THE PEPTIDE 12530 FROM MEDICINAL LEECH REMARK 900 HIRUDO MEDICINALIS IN DODECYLPHOSPHOCHOLINE MICELLES DBREF 6RSM A 1 11 PDB 6RSM 6RSM 1 11 SEQRES 1 A 11 LYS PHE LYS LYS VAL ILE TRP LYS SER PHE LEU HELIX 1 AA1 ILE A 6 LEU A 11 1 6 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1