HEADER PROTEIN BINDING 22-MAY-19 6RSS TITLE SOLUTION STRUCTURE OF THE FOURTH WW DOMAIN OF WWP2 WITH GB1-TAG COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEDD4-LIKE E3 UBIQUITIN-PROTEIN LIGASE WWP2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ATROPHIN-1-INTERACTING PROTEIN 2,AIP2,HECT-TYPE E3 UBIQUITIN COMPND 5 TRANSFERASE WWP2,WW DOMAIN-CONTAINING PROTEIN 2; COMPND 6 EC: 2.3.2.26; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: WWP2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: BL21 STAR(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSKDUET01 KEYWDS THREE-STRANDED ANTIPARALLEL BETA-SHEET, PPXY MOTIF BINDING, E3 KEYWDS 2 UBIQUITIN LIGASE, NEDD4, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR L.C.WAHL,J.E.WATT,J.TOLCHARD,T.M.A.BLUMENSCHEIN,A.CHANTRY REVDAT 2 14-JUN-23 6RSS 1 REMARK REVDAT 1 09-OCT-19 6RSS 0 JRNL AUTH L.C.WAHL,J.E.WATT,H.T.T.YIM,D.DE BOURCIER,J.TOLCHARD, JRNL AUTH 2 S.M.SOOND,T.M.A.BLUMENSCHEIN,A.CHANTRY JRNL TITL SMAD7 BINDS DIFFERENTLY TO INDIVIDUAL AND TANDEM WW3 AND WW4 JRNL TITL 2 DOMAINS OF WWP2 UBIQUITIN LIGASE ISOFORMS. JRNL REF INT J MOL SCI V. 20 2019 JRNL REFN ESSN 1422-0067 JRNL PMID 31546607 JRNL DOI 10.3390/IJMS20194682 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6RSS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1292102028. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 110 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.2 MM [U-99% 13C; U-99% 15N] REMARK 210 WWP2 WW4 DOMAIN, 90% H2O/10% D2O; REMARK 210 2.08 MM [U-99% 13C; U-99% 15N] REMARK 210 WWP2 WW4 DOMAIN, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 H(CCO)NH; 3D C(CO)NH; 3D HCCH- REMARK 210 TOCSY; 3D CCH-TOCSY; 2D 1H-13C REMARK 210 TOCSY AROMATIC; 2D HBCBCGCDHD; REMARK 210 2D 1H-1H NOESY AROMATIC; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY; 2D REMARK 210 1H-13C HSQC AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, NMRPIPE, CCPNMR REMARK 210 ANALYSIS, ARIA REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 TYR A 36 CE1 TYR A 36 CZ 0.081 REMARK 500 1 TYR A 36 CZ TYR A 36 CE2 -0.081 REMARK 500 9 PHE A 91 CZ PHE A 91 CE2 0.130 REMARK 500 11 TYR A 48 CZ TYR A 48 CE2 -0.080 REMARK 500 11 PHE A 91 CZ PHE A 91 CE2 0.129 REMARK 500 13 TYR A 36 CE1 TYR A 36 CZ -0.108 REMARK 500 13 TYR A 36 CZ TYR A 36 CE2 0.106 REMARK 500 15 TYR A 36 CE1 TYR A 36 CZ 0.130 REMARK 500 15 TYR A 36 CZ TYR A 36 CE2 -0.129 REMARK 500 15 TYR A 48 CZ TYR A 48 CE2 -0.082 REMARK 500 16 TYR A 36 CE1 TYR A 36 CZ 0.091 REMARK 500 16 TYR A 36 CZ TYR A 36 CE2 -0.094 REMARK 500 17 PHE A 91 CE1 PHE A 91 CZ -0.151 REMARK 500 17 PHE A 91 CZ PHE A 91 CE2 0.172 REMARK 500 20 TYR A 55 CE1 TYR A 55 CZ 0.081 REMARK 500 20 TYR A 55 CZ TYR A 55 CE2 -0.089 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 64 -176.15 67.94 REMARK 500 1 ILE A 70 83.93 51.60 REMARK 500 1 ALA A 74 177.91 70.01 REMARK 500 1 ARG A 97 73.46 60.40 REMARK 500 2 LEU A 15 101.57 -161.24 REMARK 500 2 GLN A 67 -73.15 73.55 REMARK 500 2 MET A 69 -160.65 60.51 REMARK 500 2 ILE A 70 4.16 89.09 REMARK 500 3 SER A 61 -163.56 62.84 REMARK 500 3 ALA A 64 -56.77 73.87 REMARK 500 3 ALA A 74 101.26 78.18 REMARK 500 4 GLN A 67 167.75 65.12 REMARK 500 4 MET A 69 -167.54 63.08 REMARK 500 4 ILE A 70 63.41 71.96 REMARK 500 4 PRO A 73 -179.73 -66.07 REMARK 500 4 ALA A 74 148.71 68.67 REMARK 500 4 ARG A 97 71.04 57.50 REMARK 500 4 PHE A 108 27.33 41.25 REMARK 500 5 ALA A 64 -74.12 66.99 REMARK 500 5 ALA A 74 -167.19 66.35 REMARK 500 6 SER A 2 -159.82 60.31 REMARK 500 6 ALA A 64 173.47 68.48 REMARK 500 6 GLN A 67 -178.46 64.44 REMARK 500 6 ARG A 97 74.27 59.15 REMARK 500 7 SER A 2 -58.99 71.75 REMARK 500 7 GLN A 67 -165.29 64.90 REMARK 500 7 PRO A 73 -178.62 -62.84 REMARK 500 8 ALA A 64 -64.52 73.39 REMARK 500 8 ARG A 97 76.98 60.51 REMARK 500 9 SER A 2 176.94 68.09 REMARK 500 9 ALA A 64 158.39 71.42 REMARK 500 9 GLN A 67 -73.15 64.25 REMARK 500 9 ILE A 70 -52.63 -135.21 REMARK 500 9 PHE A 108 43.19 39.67 REMARK 500 10 LEU A 15 99.11 -160.18 REMARK 500 10 SER A 61 -76.90 -86.25 REMARK 500 10 MET A 69 97.43 68.96 REMARK 500 10 ALA A 74 -169.12 61.59 REMARK 500 10 ARG A 97 75.42 57.38 REMARK 500 11 LEU A 15 99.11 -160.11 REMARK 500 11 SER A 61 98.30 -65.67 REMARK 500 11 GLN A 67 102.65 -59.08 REMARK 500 11 PHE A 108 41.13 39.46 REMARK 500 12 SER A 2 -65.23 -93.28 REMARK 500 12 ALA A 64 -47.66 -138.61 REMARK 500 12 ARG A 97 77.45 65.42 REMARK 500 12 PHE A 108 38.19 37.21 REMARK 500 13 SER A 61 -53.16 -127.51 REMARK 500 13 GLN A 67 86.39 61.97 REMARK 500 13 GLN A 71 24.03 -79.98 REMARK 500 REMARK 500 THIS ENTRY HAS 79 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 3 TYR A 90 0.06 SIDE CHAIN REMARK 500 7 TYR A 90 0.05 SIDE CHAIN REMARK 500 8 TYR A 90 0.07 SIDE CHAIN REMARK 500 12 TYR A 90 0.06 SIDE CHAIN REMARK 500 14 TYR A 90 0.06 SIDE CHAIN REMARK 500 20 TYR A 90 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34407 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF THE FOURTH WW DOMAIN OF WWP2 WITH GB1-TAG DBREF 6RSS A 67 109 UNP O00308 WWP2_HUMAN 438 480 SEQADV 6RSS GLY A 1 UNP O00308 EXPRESSION TAG SEQADV 6RSS SER A 2 UNP O00308 EXPRESSION TAG SEQADV 6RSS HIS A 3 UNP O00308 EXPRESSION TAG SEQADV 6RSS MET A 4 UNP O00308 EXPRESSION TAG SEQADV 6RSS GLN A 5 UNP O00308 EXPRESSION TAG SEQADV 6RSS TYR A 6 UNP O00308 EXPRESSION TAG SEQADV 6RSS LYS A 7 UNP O00308 EXPRESSION TAG SEQADV 6RSS LEU A 8 UNP O00308 EXPRESSION TAG SEQADV 6RSS ILE A 9 UNP O00308 EXPRESSION TAG SEQADV 6RSS LEU A 10 UNP O00308 EXPRESSION TAG SEQADV 6RSS ASN A 11 UNP O00308 EXPRESSION TAG SEQADV 6RSS GLY A 12 UNP O00308 EXPRESSION TAG SEQADV 6RSS LYS A 13 UNP O00308 EXPRESSION TAG SEQADV 6RSS THR A 14 UNP O00308 EXPRESSION TAG SEQADV 6RSS LEU A 15 UNP O00308 EXPRESSION TAG SEQADV 6RSS LYS A 16 UNP O00308 EXPRESSION TAG SEQADV 6RSS GLY A 17 UNP O00308 EXPRESSION TAG SEQADV 6RSS GLU A 18 UNP O00308 EXPRESSION TAG SEQADV 6RSS THR A 19 UNP O00308 EXPRESSION TAG SEQADV 6RSS THR A 20 UNP O00308 EXPRESSION TAG SEQADV 6RSS THR A 21 UNP O00308 EXPRESSION TAG SEQADV 6RSS GLU A 22 UNP O00308 EXPRESSION TAG SEQADV 6RSS ALA A 23 UNP O00308 EXPRESSION TAG SEQADV 6RSS VAL A 24 UNP O00308 EXPRESSION TAG SEQADV 6RSS ASP A 25 UNP O00308 EXPRESSION TAG SEQADV 6RSS ALA A 26 UNP O00308 EXPRESSION TAG SEQADV 6RSS ALA A 27 UNP O00308 EXPRESSION TAG SEQADV 6RSS THR A 28 UNP O00308 EXPRESSION TAG SEQADV 6RSS ALA A 29 UNP O00308 EXPRESSION TAG SEQADV 6RSS GLU A 30 UNP O00308 EXPRESSION TAG SEQADV 6RSS LYS A 31 UNP O00308 EXPRESSION TAG SEQADV 6RSS VAL A 32 UNP O00308 EXPRESSION TAG SEQADV 6RSS PHE A 33 UNP O00308 EXPRESSION TAG SEQADV 6RSS LYS A 34 UNP O00308 EXPRESSION TAG SEQADV 6RSS GLN A 35 UNP O00308 EXPRESSION TAG SEQADV 6RSS TYR A 36 UNP O00308 EXPRESSION TAG SEQADV 6RSS ALA A 37 UNP O00308 EXPRESSION TAG SEQADV 6RSS ASN A 38 UNP O00308 EXPRESSION TAG SEQADV 6RSS ASP A 39 UNP O00308 EXPRESSION TAG SEQADV 6RSS ASN A 40 UNP O00308 EXPRESSION TAG SEQADV 6RSS GLY A 41 UNP O00308 EXPRESSION TAG SEQADV 6RSS VAL A 42 UNP O00308 EXPRESSION TAG SEQADV 6RSS ASP A 43 UNP O00308 EXPRESSION TAG SEQADV 6RSS GLY A 44 UNP O00308 EXPRESSION TAG SEQADV 6RSS GLU A 45 UNP O00308 EXPRESSION TAG SEQADV 6RSS TRP A 46 UNP O00308 EXPRESSION TAG SEQADV 6RSS THR A 47 UNP O00308 EXPRESSION TAG SEQADV 6RSS TYR A 48 UNP O00308 EXPRESSION TAG SEQADV 6RSS ASP A 49 UNP O00308 EXPRESSION TAG SEQADV 6RSS ASP A 50 UNP O00308 EXPRESSION TAG SEQADV 6RSS ALA A 51 UNP O00308 EXPRESSION TAG SEQADV 6RSS THR A 52 UNP O00308 EXPRESSION TAG SEQADV 6RSS LYS A 53 UNP O00308 EXPRESSION TAG SEQADV 6RSS THR A 54 UNP O00308 EXPRESSION TAG SEQADV 6RSS TYR A 55 UNP O00308 EXPRESSION TAG SEQADV 6RSS THR A 56 UNP O00308 EXPRESSION TAG SEQADV 6RSS VAL A 57 UNP O00308 EXPRESSION TAG SEQADV 6RSS THR A 58 UNP O00308 EXPRESSION TAG SEQADV 6RSS GLU A 59 UNP O00308 EXPRESSION TAG SEQADV 6RSS GLY A 60 UNP O00308 EXPRESSION TAG SEQADV 6RSS SER A 61 UNP O00308 EXPRESSION TAG SEQADV 6RSS GLY A 62 UNP O00308 EXPRESSION TAG SEQADV 6RSS GLY A 63 UNP O00308 EXPRESSION TAG SEQADV 6RSS ALA A 64 UNP O00308 EXPRESSION TAG SEQADV 6RSS GLY A 65 UNP O00308 EXPRESSION TAG SEQADV 6RSS GLY A 66 UNP O00308 EXPRESSION TAG SEQRES 1 A 109 GLY SER HIS MET GLN TYR LYS LEU ILE LEU ASN GLY LYS SEQRES 2 A 109 THR LEU LYS GLY GLU THR THR THR GLU ALA VAL ASP ALA SEQRES 3 A 109 ALA THR ALA GLU LYS VAL PHE LYS GLN TYR ALA ASN ASP SEQRES 4 A 109 ASN GLY VAL ASP GLY GLU TRP THR TYR ASP ASP ALA THR SEQRES 5 A 109 LYS THR TYR THR VAL THR GLU GLY SER GLY GLY ALA GLY SEQRES 6 A 109 GLY GLN GLY MET ILE GLN GLU PRO ALA LEU PRO PRO GLY SEQRES 7 A 109 TRP GLU MET LYS TYR THR SER GLU GLY VAL ARG TYR PHE SEQRES 8 A 109 VAL ASP HIS ASN THR ARG THR THR THR PHE LYS ASP PRO SEQRES 9 A 109 ARG PRO GLY PHE GLU HELIX 1 AA1 ASP A 25 ASP A 39 1 15 HELIX 2 AA2 ARG A 105 GLU A 109 5 5 SHEET 1 AA1 4 LYS A 16 ALA A 23 0 SHEET 2 AA1 4 MET A 4 ASN A 11 -1 N LEU A 10 O GLY A 17 SHEET 3 AA1 4 THR A 54 THR A 58 1 O TYR A 55 N LYS A 7 SHEET 4 AA1 4 GLU A 45 ASP A 49 -1 N THR A 47 O THR A 56 SHEET 1 AA2 3 TRP A 79 TYR A 83 0 SHEET 2 AA2 3 ARG A 89 ASP A 93 -1 O TYR A 90 N LYS A 82 SHEET 3 AA2 3 THR A 98 THR A 100 -1 O THR A 100 N PHE A 91 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1